NO10G02880.1, NO10G02880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02880.1
Unique NameNO10G02880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2111
Alignment locationchr10:787957..790565 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:787957..790565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02880.1 vs.
Match: EWM25515.1 (e3 ubiquitin ligase [Nannochloropsis gaditana])

HSP 1 Score: 705.3 bits (1819), Expect = 1.500e-199
Identity = 365/484 (75.41%), Postives = 395/484 (81.61%), Query Frame = 0 
Query:   39 MADDDHGGASSSSDTTTPMRRLYRRPRPVSTLEASDGELLYGSASSGHGLAGHRQRGGRPQQEGQAGEDYDEEEREEEIGDVEWLLGTARGAPGSAEIDYTSFHRLGFRDKLRTLIWVHKARLLGHYKIFHHYIERCPCRPCSPLSRSYARSYSRALTGIGPRPCLRAPFSLLGLQGLFIRTPPSADAWRSAAGFLMEGGMSTREERGEDGDGSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGAGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVTSHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFIVRSSLTFLVVHSIMEAR-----GEGGREGRIKRLKRGLSRNSLSKLKRRESNAEDVVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCMTDVSSPAVAAALAAAAA 518
            M +++   A+   + TTP RR YRR R    L ASDGE+LYGS     G+    QRG R Q +G   E   EEE EE +GDVEWLL T R  P  AEIDYT+FHRL FRDKLRTL+WVHK RLLG YKIFH+YIERCPCRPCSPLSRSYARSYSRALT IGPRPCLRAP SLLGLQGLFIRTPPSADAWRSAA  L  GG   R       D SNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFG+GGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHA EA++A+E+IR LV SHLW+CSQALGTLFHVVAAFGPLFLY L  +SPVRRSVLAACCGNLLVFIVRS+LTFLVVHSIMEAR     G+GGREG  K L+RGLSRNSL+KL+RR+SNAEDV+ AN CAICL  FQ+GE LL LPCHERHVYH  CIE W KKNRSCPLCM D++SPA+ AALAA AA
Sbjct:    1 MMEENPSMANGGINPTTPTRRPYRRARAAPFLPASDGEMLYGS---DRGIGRAEQRGRRRQVQGVGNER--EEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGGDGGREGPRKGLRRGLSRNSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALVAALAAVAA 479
The following BLAST results are available for this feature:
BLAST of NO10G02880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25515.11.500e-19975.41e3 ubiquitin ligase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02880NO10G02880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02880.1NO10G02880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02880.1.cds1NO10G02880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02880.1.cds2NO10G02880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02880.1 ID=NO10G02880.1|Name=NO10G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2111bp
GGTCAAGCTCAGGGGGGGTGGCGAAGGGCCGGAACGCTTATCGCCCTCTG
TGTGGGCTTTGCCTTTGCAATTGAAGTGCGTCGTCCCAACTTTGATCTTC
TCACCGCTTGCGCGACAGCCAAATCCACACTCTAATATTCGGCCGCTCCA
TGTCTGTAATTGGCGCGTGTTCGGGGGTTGGCCCGTGTTTTAGCGGATTC
CTGCTAGTGCTTCTGATTTCTAACGAACAGCTCATCCCCTATCATCTACA
ACAGAACAGTGACATGGCGGACGACGATCACGGGGGCGCCAGCAGCAGCA
GCGACACCACCACGCCCATGCGACGCTTGTATCGACGGCCACGACCTGTG
TCTACACTGGAGGCGTCGGATGGAGAGTTGCTCTACGGGAGCGCGAGCAG
CGGACATGGCCTGGCTGGGCATCGACAGAGAGGGGGGCGACCCCAACAGG
AAGGCCAGGCAGGGGAGGACTACGACGAGGAGGAGAGGGAGGAAGAAATT
GGAGATGTTGAATGGCTGCTGGGGACCGCGCGAGGCGCGCCTGGCAGTGC
AGAGATTGATTATACGAGCTTCCATCGACTAGGCTTTCGGGATAAGCTCC
GCACCCTCATCTGGGTTCATAAAGCTCGTCTTTTGGGTCACTATAAAATC
TTCCACCATTACATCGAACGCTGCCCCTGCCGTCCCTGCTCGCCTCTCTC
TCGCTCCTACGCCCGCTCTTACTCTCGTGCGTTAACGGGAATTGGTCCTC
GCCCCTGTTTGCGTGCGCCTTTCTCTCTGCTTGGCTTGCAGGGACTTTTC
ATTCGCACCCCACCCTCCGCCGATGCATGGCGCTCGGCCGCCGGTTTCCT
GATGGAAGGAGGGATGAGCACAAGGGAGGAAAGGGGGGAGGACGGGGATG
GTTCCAATGCTTACTTGGTGGAGATCTTTCGGTTGCAGCCATACGCTGCT
GCTGCCTATCTAAGGGCTCTGTTGTATTGCTGGATCGGAGGGGTGATGCT
TCAGCTAGAGGCAGCGGCAAGTTTCGGCGCGGGGGGGGATACGTTCTATG
AGAGAACAGCGTGGCATTGGCTGTGTCTGCAGTTGGTGCTGCAGCTGCTG
CAGGCCCCTGCGAGGTGCAAGTTGTGGAGACGGCTCGTCCGGGTCAGTCA
CGCGGCGGAGGCGGAGGAGGCAAGTGAGCGGATCCGATGGTTGGTGACGA
GTCATTTGTGGATTTGCAGTCAAGCGCTTGGGACGTTGTTTCATGTGGTG
GCGGCATTTGGGCCCTTGTTTTTGTATTTTTTGGACAGCTCCAGCCCTGT
CCGGCGGAGTGTGTTGGCTGCGTGTTGTGGAAATTTACTTGTGTTTATTG
TTAGGTCTTCACTGACCTTCTTGGTGGTCCATTCCATCATGGAGGCGAGG
GGAGAGGGCGGGAGGGAGGGAAGGATCAAGAGGCTGAAGAGGGGGTTGTC
AAGGAATAGCTTGTCCAAGTTGAAGAGGAGGGAGAGCAACGCAGAGGATG
TGGTGAATGCGAACCAGTGCGCGATTTGCTTGGGGTCTTTTCAGCAGGGA
GAGAATCTGCTATTGCTGCCCTGTCATGAACGACATGTCTATCATTGTGA
GTGTATTGAGACGTGGTTCAAAAAGAACAGATCTTGTCCTCTGTGCATGA
CCGATGTTTCTTCTCCTGCAGTGGCTGCAGCGCTGGCAGCAGCAGCAGCA
GCGACAAAGGAGAAGGAAGAAAAGGAGGGAAGGAGGGAAGACATGCATAG
GGAAATGCGGCAGGTGCTGCAGCAGCATGATATATGCAATTAGCAAGGGA
GTGAGAAACAGAAAAACCGATAGATCTACGGCAACAGGAAGAACGACTCA
ATGAGTGAAGACGAACGACCACACTTAAGAGTGGAAGACGAGAGAGGAAG
TTGATTTAAATTTTGGTGAGGGGAAGGCAGCCGCAGTTGCAATAGTAGAA
GCAATCCTTAACCATGCTTGTAAATGTTTGGAAGAGAAGGAGAGAATCCG
CAAGTCGAAGCTTATAGAAGATATTTTTTAAAGCTTAAAATGGACGAGAT
CCTTGGGACATCGACGGAAATAGATCTTTGGAAGAAAAATCATATCGACG
TGCGTTAAAAC
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protein sequence of NO10G02880.1

>NO10G02880.1-protein ID=NO10G02880.1-protein|Name=NO10G02880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MSVIGACSGVGPCFSGFLLVLLISNEQLIPYHLQQNSDMADDDHGGASSS
SDTTTPMRRLYRRPRPVSTLEASDGELLYGSASSGHGLAGHRQRGGRPQQ
EGQAGEDYDEEEREEEIGDVEWLLGTARGAPGSAEIDYTSFHRLGFRDKL
RTLIWVHKARLLGHYKIFHHYIERCPCRPCSPLSRSYARSYSRALTGIGP
RPCLRAPFSLLGLQGLFIRTPPSADAWRSAAGFLMEGGMSTREERGEDGD
GSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGAGGDTFY
ERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAAEAEEASERIRWLVT
SHLWICSQALGTLFHVVAAFGPLFLYFLDSSSPVRRSVLAACCGNLLVFI
VRSSLTFLVVHSIMEARGEGGREGRIKRLKRGLSRNSLSKLKRRESNAED
VVNANQCAICLGSFQQGENLLLLPCHERHVYHCECIETWFKKNRSCPLCM
TDVSSPAVAAALAAAAAATKEKEEKEGRREDMHREMRQVLQQHDICN*
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mRNA from alignment at chr10:787957..790565+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02880.1 ID=NO10G02880.1|Name=NO10G02880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2609bp|location=Sequence derived from alignment at chr10:787957..790565+ (Nannochloropsis oceanica)
GGTCAAGCTCAGGGGGGGTGGCGAAGGGCCGGAACGCTTATCGCCCTCTG
TGTGGGCTTTGCCTTTGCAATTGAAGTGCGTCGTCCCAACTTTGATCTTC
TCACCGCTTGCGCGACAGCCAAATCCACACTCTAATATTCGGCCGCTCCA
TGTCTGTAATTGGCGCGTGTTCGGGGGTTGGCCCGTGTTTTAGCGGATTC
CTGCTAGTGCTTCTGATTTCTAACGAACAGCTCATCCCCTATCATCTACA
ACAGAACAGTGACATGGCGGACGACGATCACGGGGGCGCCAGCAGCAGCA
GCGACACCACCACGCCCATGCGACGCTTGTATCGACGGCCACGACCTGTG
TCTACACTGGAGGCGTCGGATGGAGAGTTGCTCTACGGGAGCGCGAGCAG
CGGACATGGCCTGGCTGGGCATCGACAGAGAGGGGGGCGACCCCAACAGG
AAGGCCAGGCAGGGGAGGACTACGACGAGGAGGAGAGGGAGGAAGAAATT
GGAGATGTTGAATGGCTGCTGGGGACCGCGCGAGGCGCGCCTGGCAGTGC
AGAGATTGATTATACGAGCTTCCATCGACTAGGCTTTCGGGATAAGGTGA
GTTTGGGAGAAAGGTTTGATGGAAGGAGGTGAAAGTGGAGGCAGTGAGAG
GAGAGGACTCGTTAAGGGTGCCATATCAATGCGATTTGAGACTGACACTC
GTAGGATGCATCTTAACATATGCGTGCGTGTGTACAAGCGTGTGTGGGTA
GTGCCTTGGGCGCGAGCACCCGGCCGTTCCCTTTTTCGTCCCTCCCTCTC
CTGTAGCGAGCAGCGAATCTATCGGCCTTGATTGCCCGAATCGGACCTTC
CACGTATTGAATCTTTTTGATTCTGCTCCCGTGTTGTCTTTTCGTGCTTG
TGAGAGATGAAGAATCGGGTCCTTTTCCTTCCTTTCTTCTAGAACCTCTC
TCCCATCATGTATGCATTCACACCTTCATTTCCCCGTCCATCCCCGCGCT
AGATCTACACGCCCTTGCTCCCTATCAACAAGCTACTTTCATCATATTAC
ACTCACTGCCCCTTCCTTTCTACTTCCCTTATTCCCTCCTACAGCTCCGC
ACCCTCATCTGGGTTCATAAAGCTCGTCTTTTGGGTCACTATAAAATCTT
CCACCATTACATCGAACGCTGCCCCTGCCGTCCCTGCTCGCCTCTCTCTC
GCTCCTACGCCCGCTCTTACTCTCGTGCGTTAACGGGAATTGGTCCTCGC
CCCTGTTTGCGTGCGCCTTTCTCTCTGCTTGGCTTGCAGGGACTTTTCAT
TCGCACCCCACCCTCCGCCGATGCATGGCGCTCGGCCGCCGGTTTCCTGA
TGGAAGGAGGGATGAGCACAAGGGAGGAAAGGGGGGAGGACGGGGATGGT
TCCAATGCTTACTTGGTGGAGATCTTTCGGTTGCAGCCATACGCTGCTGC
TGCCTATCTAAGGGCTCTGTTGTATTGCTGGATCGGAGGGGTGATGCTTC
AGCTAGAGGCAGCGGCAAGTTTCGGCGCGGGGGGGGATACGTTCTATGAG
AGAACAGCGTGGCATTGGCTGTGTCTGCAGTTGGTGCTGCAGCTGCTGCA
GGCCCCTGCGAGGTGCAAGTTGTGGAGACGGCTCGTCCGGGTCAGTCACG
CGGCGGAGGCGGAGGAGGCAAGTGAGCGGATCCGATGGTTGGTGACGAGT
CATTTGTGGATTTGCAGTCAAGCGCTTGGGACGTTGTTTCATGTGGTGGC
GGCATTTGGGCCCTTGTTTTTGTATTTTTTGGACAGCTCCAGCCCTGTCC
GGCGGAGTGTGTTGGCTGCGTGTTGTGGAAATTTACTTGTGTTTATTGTT
AGGTCTTCACTGACCTTCTTGGTGGTCCATTCCATCATGGAGGCGAGGGG
AGAGGGCGGGAGGGAGGGAAGGATCAAGAGGCTGAAGAGGGGGTTGTCAA
GGAATAGCTTGTCCAAGTTGAAGAGGAGGGAGAGCAACGCAGAGGATGTG
GTGAATGCGAACCAGTGCGCGATTTGCTTGGGGTCTTTTCAGCAGGGAGA
GAATCTGCTATTGCTGCCCTGTCATGAACGACATGTCTATCATTGTGAGT
GTATTGAGACGTGGTTCAAAAAGAACAGATCTTGTCCTCTGTGCATGACC
GATGTTTCTTCTCCTGCAGTGGCTGCAGCGCTGGCAGCAGCAGCAGCAGC
GACAAAGGAGAAGGAAGAAAAGGAGGGAAGGAGGGAAGACATGCATAGGG
AAATGCGGCAGGTGCTGCAGCAGCATGATATATGCAATTAGCAAGGGAGT
GAGAAACAGAAAAACCGATAGATCTACGGCAACAGGAAGAACGACTCAAT
GAGTGAAGACGAACGACCACACTTAAGAGTGGAAGACGAGAGAGGAAGTT
GATTTAAATTTTGGTGAGGGGAAGGCAGCCGCAGTTGCAATAGTAGAAGC
AATCCTTAACCATGCTTGTAAATGTTTGGAAGAGAAGGAGAGAATCCGCA
AGTCGAAGCTTATAGAAGATATTTTTTAAAGCTTAAAATGGACGAGATCC
TTGGGACATCGACGGAAATAGATCTTTGGAAGAAAAATCATATCGACGTG
CGTTAAAAC
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Coding sequence (CDS) from alignment at chr10:787957..790565+

>NO10G02880.1 ID=NO10G02880.1|Name=NO10G02880.1|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at chr10:787957..790565+ (Nannochloropsis oceanica)
ATGTCTGTAATTGGCGCGTGTTCGGGGGTTGGCCCGTGTTTTAGCGGATT
CCTGCTAGTGCTTCTGATTTCTAACGAACAGCTCATCCCCTATCATCTAC
AACAGAACAGTGACATGGCGGACGACGATCACGGGGGCGCCAGCAGCAGC
AGCGACACCACCACGCCCATGCGACGCTTGTATCGACGGCCACGACCTGT
GTCTACACTGGAGGCGTCGGATGGAGAGTTGCTCTACGGGAGCGCGAGCA
GCGGACATGGCCTGGCTGGGCATCGACAGAGAGGGGGGCGACCCCAACAG
GAAGGCCAGGCAGGGGAGGACTACGACGAGGAGGAGAGGGAGGAAGAAAT
TGGAGATGTTGAATGGCTGCTGGGGACCGCGCGAGGCGCGCCTGGCAGTG
CAGAGATTGATTATACGAGCTTCCATCGACTAGGCTTTCGGGATAAGCTC
CGCACCCTCATCTGGGTTCATAAAGCTCGTCTTTTGGGTCACTATAAAAT
CTTCCACCATTACATCGAACGCTGCCCCTGCCGTCCCTGCTCGCCTCTCT
CTCGCTCCTACGCCCGCTCTTACTCTCGTGCGTTAACGGGAATTGGTCCT
CGCCCCTGTTTGCGTGCGCCTTTCTCTCTGCTTGGCTTGCAGGGACTTTT
CATTCGCACCCCACCCTCCGCCGATGCATGGCGCTCGGCCGCCGGTTTCC
TGATGGAAGGAGGGATGAGCACAAGGGAGGAAAGGGGGGAGGACGGGGAT
GGTTCCAATGCTTACTTGGTGGAGATCTTTCGGTTGCAGCCATACGCTGC
TGCTGCCTATCTAAGGGCTCTGTTGTATTGCTGGATCGGAGGGGTGATGC
TTCAGCTAGAGGCAGCGGCAAGTTTCGGCGCGGGGGGGGATACGTTCTAT
GAGAGAACAGCGTGGCATTGGCTGTGTCTGCAGTTGGTGCTGCAGCTGCT
GCAGGCCCCTGCGAGGTGCAAGTTGTGGAGACGGCTCGTCCGGGTCAGTC
ACGCGGCGGAGGCGGAGGAGGCAAGTGAGCGGATCCGATGGTTGGTGACG
AGTCATTTGTGGATTTGCAGTCAAGCGCTTGGGACGTTGTTTCATGTGGT
GGCGGCATTTGGGCCCTTGTTTTTGTATTTTTTGGACAGCTCCAGCCCTG
TCCGGCGGAGTGTGTTGGCTGCGTGTTGTGGAAATTTACTTGTGTTTATT
GTTAGGTCTTCACTGACCTTCTTGGTGGTCCATTCCATCATGGAGGCGAG
GGGAGAGGGCGGGAGGGAGGGAAGGATCAAGAGGCTGAAGAGGGGGTTGT
CAAGGAATAGCTTGTCCAAGTTGAAGAGGAGGGAGAGCAACGCAGAGGAT
GTGGTGAATGCGAACCAGTGCGCGATTTGCTTGGGGTCTTTTCAGCAGGG
AGAGAATCTGCTATTGCTGCCCTGTCATGAACGACATGTCTATCATTGTG
AGTGTATTGAGACGTGGTTCAAAAAGAACAGATCTTGTCCTCTGTGCATG
ACCGATGTTTCTTCTCCTGCAGTGGCTGCAGCGCTGGCAGCAGCAGCAGC
AGCGACAAAGGAGAAGGAAGAAAAGGAGGGAAGGAGGGAAGACATGCATA
GGGAAATGCGGCAGGTGCTGCAGCAGCATGATATATGCAATTAG
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Synonyms
Publications