NO10G02780.1, NO10G02780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02780.1
Unique NameNO10G02780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1713
Alignment locationchr10:762718..764702 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:762718..764702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02780.1 vs.
Match: EWM25522.1 (arginine biosynthesis bifunctional protein [Nannochloropsis gaditana])

HSP 1 Score: 781.9 bits (2018), Expect = 1.300e-222
Identity = 407/531 (76.65%), Postives = 454/531 (85.50%), Query Frame = 0 
Query:   42 VAATTSTSSFMPPGFCFRRAFATTTRACNVPSLSSSGFHNTLTTHHRALFLTPENQHAIDEARRRQFRASSTTLHASTSSPSSQPSSLTFSTKDEYFAHLSSIADLPLGFKVGTSWISFTPQEANFPSRMNVTLIALDEPTDKFALALTKNAFPGAPVRVGKQRKEQPLLQAIVVNNKISNVCPGGYGGDGGVADAELVCAAVAKHLNLPSGSLVLPSSTGVIGWRLPFQAVIDAVPSVLKTMQSTSILPAAAGIITTDRYPKIRAASIGGGKIVGIAKGAGMIEPNLATMLVYLLTDLAVPREVLRQWLPEVVGGSFNCISVDSDQSTSDTVVLLSSGKVPVDEADYPAIKESLISLARKLAEDIVRNGEGTNHVIELKVSHAPSLAIARALGRQVINSPLLKCAIAGNDPNVGRLAAAVGSYVGNQGLESDLRLEKCRLLMGGKIVFKGGAFELDPEKERYLVEHMEAAQLEPGPLTMASGAHIEFPPHERNVMLEVDLGEEGGE--ELTLFGSDLTYAYVTENADYRS 571
            V A +ST S    GFCFRRAF TT RA    S  S+    T   H RALFL PENQHA+DEARRR +RASST LH+S+SS S  PSSL+FS+K++Y AHL  I  LP GFK GTSWISFTP EANFPSRMNVTLIALDEPTDKFA+A TKNAFPGAP+RVG++R ++  LQAIVVNNKISNVCPGG G DGGV DAE VC AVA+ L LPSG LVLPSSTGVIGWRLP QA+IDAVP VL+TMQ+ S++PAAAGI+TTDRYPK+RAA++ GGKIVGIAKGAGMIEPNLATMLVYLLTDLA+PR+VLR WLPEVVGGSFNCISVDSDQSTSDTV L+SSGKV V E+DYPAIK SL SLA++LAEDIVRNGEGTNHVIEL VS+APS+ +ARALGR VINSPLLKCAIAGNDPNVGRLAAAVGSYVGNQGL   LRLE+CRLLMGG++VFKGGAFELDPEKE  LVEHM+ AQL+PGPLTM SG+H+ FP HE+NV +EVDLGE+ G+   LTL+GSDLTYAYV ENADYRS
Sbjct:   18 VTAISSTVS----GFCFRRAFFTTRRA----SSFSAAARMTTQKHPRALFLNPENQHAVDEARRRHYRASSTALHSSSSS-SPNPSSLSFSSKEDYLAHLKRIGQLPAGFKCGTSWISFTPVEANFPSRMNVTLIALDEPTDKFAIAFTKNAFPGAPIRVGRERLKETHLQAIVVNNKISNVCPGGEG-DGGVGDAEEVCQAVARRLGLPSGKLVLPSSTGVIGWRLPRQAIIDAVPRVLETMQAASVVPAAAGILTTDRYPKVRAATVAGGKIVGIAKGAGMIEPNLATMLVYLLTDLALPRDVLRAWLPEVVGGSFNCISVDSDQSTSDTVALVSSGKVAVSESDYPAIKASLTSLAQRLAEDIVRNGEGTNHVIELHVSNAPSVEVARALGRHVINSPLLKCAIAGNDPNVGRLAAAVGSYVGNQGLTEGLRLERCRLLMGGQVVFKGGAFELDPEKEALLVEHMKDAQLDPGPLTMDSGSHVTFPAHEKNVKVEVDLGEQAGKGVGLTLYGSDLTYAYVAENADYRS 538
The following BLAST results are available for this feature:
BLAST of NO10G02780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25522.11.300e-22276.65arginine biosynthesis bifunctional protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02780NO10G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02780.1NO10G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02780.1.cds1NO10G02780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02780.1.cds2NO10G02780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02780.1 ID=NO10G02780.1|Name=NO10G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1713bp
ATGACAACAATCACTCCACGCAGTCCACCGCCCACTCTTACAAGCCCACC
ACGAGAATGCAGGCGTCGAGCCATTATGGCGCTGCGGCCAGCGGGTTTTA
TTTCTCTAACCGCCCTCGCCATCGTAGCGGCAACAACATCTACCTCTTCG
TTCATGCCTCCCGGCTTTTGCTTCCGCCGCGCTTTTGCGACGACCACCCG
GGCATGCAACGTGCCCTCTTTATCCTCCTCCGGCTTCCACAACACCCTCA
CCACCCACCACCGCGCCCTATTCCTCACCCCCGAGAACCAACACGCCATA
GACGAAGCCCGTCGTCGTCAATTTCGCGCCAGCAGCACCACTTTGCACGC
CTCTACCTCTTCCCCCTCCTCTCAACCCTCCTCCCTGACCTTCAGTACCA
AAGACGAGTACTTTGCGCACCTTTCCTCTATCGCCGACCTCCCCCTCGGC
TTCAAGGTTGGCACCTCGTGGATTTCATTCACGCCTCAAGAAGCCAATTT
CCCCTCCCGTATGAATGTGACCCTCATTGCTCTTGATGAGCCCACCGATA
AATTTGCTTTAGCGTTGACAAAAAATGCCTTCCCCGGGGCACCTGTCCGT
GTGGGGAAACAACGCAAAGAGCAACCCCTCCTTCAAGCCATCGTCGTCAA
CAACAAGATCTCCAACGTCTGTCCCGGTGGCTATGGGGGAGACGGTGGCG
TAGCCGACGCCGAGCTTGTGTGCGCCGCCGTCGCCAAGCACCTCAACCTT
CCCTCAGGCAGCCTTGTCCTTCCCTCCTCCACCGGTGTAATTGGCTGGCG
CCTCCCCTTCCAGGCCGTCATCGACGCCGTCCCTTCCGTCCTCAAAACAA
TGCAATCCACCTCCATTCTCCCCGCGGCTGCTGGTATCATCACCACGGAT
CGCTACCCCAAAATTCGAGCCGCTTCCATCGGAGGCGGGAAAATCGTGGG
TATCGCCAAGGGGGCAGGGATGATCGAGCCGAACCTCGCAACCATGCTCG
TATATCTCTTGACTGATCTGGCGGTACCGCGAGAAGTACTACGGCAATGG
TTGCCCGAAGTGGTGGGGGGTAGTTTCAATTGCATTTCGGTCGATTCGGA
TCAGAGCACCTCCGACACAGTCGTCCTCCTCTCCAGCGGCAAGGTCCCTG
TGGATGAAGCAGACTACCCTGCTATCAAAGAATCCCTCATCTCACTGGCA
CGGAAACTCGCGGAGGACATTGTCAGGAACGGGGAAGGAACGAACCACGT
CATCGAGCTCAAGGTCTCCCATGCCCCTTCCCTCGCCATAGCCCGCGCCC
TCGGCCGGCAAGTCATCAATTCTCCCTTGCTCAAATGTGCGATCGCCGGC
AACGACCCCAACGTCGGTCGCCTTGCGGCTGCCGTTGGCTCGTACGTGGG
GAACCAAGGCCTGGAAAGCGATTTGAGGTTGGAAAAATGTCGTTTATTGA
TGGGGGGAAAGATAGTCTTTAAGGGAGGGGCTTTTGAGCTTGATCCGGAG
AAGGAGAGGTATCTTGTAGAACACATGGAGGCCGCGCAGCTGGAGCCTGG
CCCATTGACCATGGCGAGTGGGGCGCACATTGAATTTCCTCCGCACGAAA
GGAATGTGATGTTGGAAGTGGACTTGGGGGAGGAAGGGGGGGAGGAACTG
ACGTTGTTTGGGAGTGATTTGACGTACGCGTATGTGACTGAGAATGCGGA
TTACAGGTCGTAG
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protein sequence of NO10G02780.1

>NO10G02780.1-protein ID=NO10G02780.1-protein|Name=NO10G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=571bp
MTTITPRSPPPTLTSPPRECRRRAIMALRPAGFISLTALAIVAATTSTSS
FMPPGFCFRRAFATTTRACNVPSLSSSGFHNTLTTHHRALFLTPENQHAI
DEARRRQFRASSTTLHASTSSPSSQPSSLTFSTKDEYFAHLSSIADLPLG
FKVGTSWISFTPQEANFPSRMNVTLIALDEPTDKFALALTKNAFPGAPVR
VGKQRKEQPLLQAIVVNNKISNVCPGGYGGDGGVADAELVCAAVAKHLNL
PSGSLVLPSSTGVIGWRLPFQAVIDAVPSVLKTMQSTSILPAAAGIITTD
RYPKIRAASIGGGKIVGIAKGAGMIEPNLATMLVYLLTDLAVPREVLRQW
LPEVVGGSFNCISVDSDQSTSDTVVLLSSGKVPVDEADYPAIKESLISLA
RKLAEDIVRNGEGTNHVIELKVSHAPSLAIARALGRQVINSPLLKCAIAG
NDPNVGRLAAAVGSYVGNQGLESDLRLEKCRLLMGGKIVFKGGAFELDPE
KERYLVEHMEAAQLEPGPLTMASGAHIEFPPHERNVMLEVDLGEEGGEEL
TLFGSDLTYAYVTENADYRS*
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mRNA from alignment at chr10:762718..764702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02780.1 ID=NO10G02780.1|Name=NO10G02780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp|location=Sequence derived from alignment at chr10:762718..764702+ (Nannochloropsis oceanica)
ATGACAACAATCACTCCACGCAGTCCACCGCCCACTCTTACAAGCCCACC
ACGAGAATGCAGGCGTCGAGGTGAGGGCGATGGAGAGTTTGGGACCTGCT
TGGATGTCATTGCGTCCTTTTCGCTCCTGTCGCCTTCGTCGTCATGATAA
TTTTTTCCACAGGAGCAAGGCGAGACTGTCTTCACGACAGCAGAGGGGCA
GTCCACGACACGAGTTGAATCGCGCAATGAGTGCTGGAAACCCTTGGCTC
ACGCTATAAAATCGTATCAGTCCTTTATTCTCTTCAAGTCAGTAAGACTC
ATTCTACGCCCCTCCCTCCCCCCCCTTCACTACGCATTACAGCCATTATG
GCGCTGCGGCCAGCGGGTTTTATTTCTCTAACCGCCCTCGCCATCGTAGC
GGCAACAACATCTACCTCTTCGTTCATGCCTCCCGGCTTTTGCTTCCGCC
GCGCTTTTGCGACGACCACCCGGGCATGCAACGTGCCCTCTTTATCCTCC
TCCGGCTTCCACAACACCCTCACCACCCACCACCGCGCCCTATTCCTCAC
CCCCGAGAACCAACACGCCATAGACGAAGCCCGTCGTCGTCAATTTCGCG
CCAGCAGCACCACTTTGCACGCCTCTACCTCTTCCCCCTCCTCTCAACCC
TCCTCCCTGACCTTCAGTACCAAAGACGAGTACTTTGCGCACCTTTCCTC
TATCGCCGACCTCCCCCTCGGCTTCAAGGTTGGCACCTCGTGGATTTCAT
TCACGCCTCAAGAAGCCAATTTCCCCTCCCGTATGAATGTGACCCTCATT
GCTCTTGATGAGCCCACCGATAAATTTGCTTTAGCGTTGACAAAAAATGC
CTTCCCCGGGGCACCTGTCCGTGTGGGGAAACAACGCAAAGAGCAACCCC
TCCTTCAAGCCATCGTCGTCAACAACAAGATCTCCAACGTCTGTCCCGGT
GGCTATGGGGGAGACGGTGGCGTAGCCGACGCCGAGCTTGTGTGCGCCGC
CGTCGCCAAGCACCTCAACCTTCCCTCAGGCAGCCTTGTCCTTCCCTCCT
CCACCGGTGTAATTGGCTGGCGCCTCCCCTTCCAGGCCGTCATCGACGCC
GTCCCTTCCGTCCTCAAAACAATGCAATCCACCTCCATTCTCCCCGCGGC
TGCTGGTATCATCACCACGGATCGCTACCCCAAAATTCGAGCCGCTTCCA
TCGGAGGCGGGAAAATCGTGGGTATCGCCAAGGGGGCAGGGATGATCGAG
CCGAACCTCGCAACCATGCTCGTATATCTCTTGACTGATCTGGCGGTACC
GCGAGAAGTACTACGGCAATGGTTGCCCGAAGTGGTGGGGGGTAGTTTCA
ATTGCATTTCGGTCGATTCGGATCAGAGCACCTCCGACACAGTCGTCCTC
CTCTCCAGCGGCAAGGTCCCTGTGGATGAAGCAGACTACCCTGCTATCAA
AGAATCCCTCATCTCACTGGCACGGAAACTCGCGGAGGACATTGTCAGGA
ACGGGGAAGGAACGAACCACGTCATCGAGCTCAAGGTCTCCCATGCCCCT
TCCCTCGCCATAGCCCGCGCCCTCGGCCGGCAAGTCATCAATTCTCCCTT
GCTCAAATGTGCGATCGCCGGCAACGACCCCAACGTCGGTCGCCTTGCGG
CTGCCGTTGGCTCGTACGTGGGGAACCAAGGCCTGGAAAGCGATTTGAGG
TTGGAAAAATGTCGTTTATTGATGGGGGGAAAGATAGTCTTTAAGGGAGG
GGCTTTTGAGCTTGATCCGGAGAAGGAGAGGTATCTTGTAGAACACATGG
AGGCCGCGCAGCTGGAGCCTGGCCCATTGACCATGGCGAGTGGGGCGCAC
ATTGAATTTCCTCCGCACGAAAGGAATGTGATGTTGGAAGTGGACTTGGG
GGAGGAAGGGGGGGAGGAACTGACGTTGTTTGGGAGTGATTTGACGTACG
CGTATGTGACTGAGAATGCGGATTACAGGTCGTAG
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Coding sequence (CDS) from alignment at chr10:762718..764702+

>NO10G02780.1 ID=NO10G02780.1|Name=NO10G02780.1|organism=Nannochloropsis oceanica|type=CDS|length=1713bp|location=Sequence derived from alignment at chr10:762718..764702+ (Nannochloropsis oceanica)
ATGACAACAATCACTCCACGCAGTCCACCGCCCACTCTTACAAGCCCACC
ACGAGAATGCAGGCGTCGAGCCATTATGGCGCTGCGGCCAGCGGGTTTTA
TTTCTCTAACCGCCCTCGCCATCGTAGCGGCAACAACATCTACCTCTTCG
TTCATGCCTCCCGGCTTTTGCTTCCGCCGCGCTTTTGCGACGACCACCCG
GGCATGCAACGTGCCCTCTTTATCCTCCTCCGGCTTCCACAACACCCTCA
CCACCCACCACCGCGCCCTATTCCTCACCCCCGAGAACCAACACGCCATA
GACGAAGCCCGTCGTCGTCAATTTCGCGCCAGCAGCACCACTTTGCACGC
CTCTACCTCTTCCCCCTCCTCTCAACCCTCCTCCCTGACCTTCAGTACCA
AAGACGAGTACTTTGCGCACCTTTCCTCTATCGCCGACCTCCCCCTCGGC
TTCAAGGTTGGCACCTCGTGGATTTCATTCACGCCTCAAGAAGCCAATTT
CCCCTCCCGTATGAATGTGACCCTCATTGCTCTTGATGAGCCCACCGATA
AATTTGCTTTAGCGTTGACAAAAAATGCCTTCCCCGGGGCACCTGTCCGT
GTGGGGAAACAACGCAAAGAGCAACCCCTCCTTCAAGCCATCGTCGTCAA
CAACAAGATCTCCAACGTCTGTCCCGGTGGCTATGGGGGAGACGGTGGCG
TAGCCGACGCCGAGCTTGTGTGCGCCGCCGTCGCCAAGCACCTCAACCTT
CCCTCAGGCAGCCTTGTCCTTCCCTCCTCCACCGGTGTAATTGGCTGGCG
CCTCCCCTTCCAGGCCGTCATCGACGCCGTCCCTTCCGTCCTCAAAACAA
TGCAATCCACCTCCATTCTCCCCGCGGCTGCTGGTATCATCACCACGGAT
CGCTACCCCAAAATTCGAGCCGCTTCCATCGGAGGCGGGAAAATCGTGGG
TATCGCCAAGGGGGCAGGGATGATCGAGCCGAACCTCGCAACCATGCTCG
TATATCTCTTGACTGATCTGGCGGTACCGCGAGAAGTACTACGGCAATGG
TTGCCCGAAGTGGTGGGGGGTAGTTTCAATTGCATTTCGGTCGATTCGGA
TCAGAGCACCTCCGACACAGTCGTCCTCCTCTCCAGCGGCAAGGTCCCTG
TGGATGAAGCAGACTACCCTGCTATCAAAGAATCCCTCATCTCACTGGCA
CGGAAACTCGCGGAGGACATTGTCAGGAACGGGGAAGGAACGAACCACGT
CATCGAGCTCAAGGTCTCCCATGCCCCTTCCCTCGCCATAGCCCGCGCCC
TCGGCCGGCAAGTCATCAATTCTCCCTTGCTCAAATGTGCGATCGCCGGC
AACGACCCCAACGTCGGTCGCCTTGCGGCTGCCGTTGGCTCGTACGTGGG
GAACCAAGGCCTGGAAAGCGATTTGAGGTTGGAAAAATGTCGTTTATTGA
TGGGGGGAAAGATAGTCTTTAAGGGAGGGGCTTTTGAGCTTGATCCGGAG
AAGGAGAGGTATCTTGTAGAACACATGGAGGCCGCGCAGCTGGAGCCTGG
CCCATTGACCATGGCGAGTGGGGCGCACATTGAATTTCCTCCGCACGAAA
GGAATGTGATGTTGGAAGTGGACTTGGGGGAGGAAGGGGGGGAGGAACTG
ACGTTGTTTGGGAGTGATTTGACGTACGCGTATGTGACTGAGAATGCGGA
TTACAGGTCGTAG
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Synonyms
Publications