NO10G02730.1, NO10G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02730.1
Unique NameNO10G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1497
Alignment locationchr10:750188..751684 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:750188..751684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02730.1 vs.
Match: EWM25487.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 509.6 bits (1311), Expect = 1.100e-140
Identity = 319/497 (64.19%), Postives = 361/497 (72.64%), Query Frame = 0 
Query:    1 MTTETTGTAVAELSVEEPVKEVEAPAAPTTTAAVPATPTAEGPADEAKVNEVAPV----ENPPV---KMKEIAAAAAPTATVAIPAKKEEVPAA----LAAPAPAAPLTAAQTSELKALMDFYFGAANWRRDKFLQGEAAKDPEGYVPLTVLLTFNKLKKLTTDSAIVVKALEQAPHSTLLTLNADKTAVKRTVASIPATGAEGGDAASDDSDKRTLFVDGIPKVPTDGAAEVTVDDIVSIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPTVADAQKALAVEWKTHPVASLGGKTNVILRVRQYERDYKSKLSSGGAGAAVGQKRRAQEVEEGGEGGEGGEKKAKAVCDFDLPENFEKELAALVPRHVKFTGIKPGTLYYELREFFNKYGQVKYVSYVADSNVALIKFLLPETAAKFLGEGEKREVSEVVFKEEKLVAEAPTEEEVREQLLAKNARKRSNLENRGQGRREGGRHGGGGGGRGRGGGKGRGGGGRGR 487
            MT ET   AVA L   +  KE     A  T  + P TPT +GPAD A+ +E A V    EN        +E AAA+ P+AT    A+  E   A     A       LT A  +++K+LM+FYFGAANWRRDKFLQGEAAKDPEGYVPLTV L  NKLKKLT+D A+VV+ALE+ P S+LL+L  DK AVKRTV    AT  E G    DDSD+RTLFVDGIPK+P DGA EVTVDDIV+IFKALGPVDFVRLSRDKTSKKLTGAAFVEFP VADAQ+ LAVEWK+ P+ +LGGKTNVILRVRQYERDYK+K+++   GA VG KR+  E       G+GGE+K   V DF+LPENFEKELA LVPRHVKFTGIK GT YYELREFFNKYG VKYV+Y  DS+VAL+KFL  ETAAKFL  G+  EVS+VVFKEEKL   APTE EVREQL AKNARKRSNLE RGQ RREGG+      GRG GG +GRG GGRGR
Sbjct:   62 MTAETE--AVAALETPQSTKE----EANVTAVSAPETPTTQGPADNAREDESASVNVNVENEAAGDASKREDAAASCPSATTTGEAESAETALADSVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEG---KDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPE-------GDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFL--GDTPEVSDVVFKEEKLGVVAPTEAEVREQLTAKNARKRSNLEARGQARREGGK------GRGGGGKRGRGAGGRGR 534
The following BLAST results are available for this feature:
BLAST of NO10G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25487.11.100e-14064.19Winged helix-turn-helix transcription repressor [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02730NO10G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02730.1NO10G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02730.1.cds1NO10G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02730.1 ID=NO10G02730.1|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
ATGACGACTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGA
ACCGGTCAAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAG
TCCCCGCCACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAAT
GAAGTTGCCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGC
TGCTGCTGCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAG
TCCCTGCTGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCG
CAGACATCGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAA
CTGGCGCCGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGG
GCTATGTCCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTC
ACCACCGACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAG
CACACTGCTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGG
CTTCAATCCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGAC
AGCGACAAGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGA
CGGCGCGGCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCT
TGGGTCCTGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAG
CTGACGGGGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAA
GGCATTGGCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGA
AGACGAATGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGC
AAACTGTCTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGC
GCAAGAAGTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGG
CAAAAGCGGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTG
GCCGCGCTTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTAC
GCTTTATTACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGT
ACGTCTCGTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTG
CCCGAGACGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAG
CGAGGTGGTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGG
AAGAGGTCCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAAC
TTGGAAAATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGG
AGGGGGAGGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGTGGGGGGC
GTGGTCGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAG
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protein sequence of NO10G02730.1

>NO10G02730.1-protein ID=NO10G02730.1-protein|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MTTETTGTAVAELSVEEPVKEVEAPAAPTTTAAVPATPTAEGPADEAKVN
EVAPVENPPVKMKEIAAAAAPTATVAIPAKKEEVPAALAAPAPAAPLTAA
QTSELKALMDFYFGAANWRRDKFLQGEAAKDPEGYVPLTVLLTFNKLKKL
TTDSAIVVKALEQAPHSTLLTLNADKTAVKRTVASIPATGAEGGDAASDD
SDKRTLFVDGIPKVPTDGAAEVTVDDIVSIFKALGPVDFVRLSRDKTSKK
LTGAAFVEFPTVADAQKALAVEWKTHPVASLGGKTNVILRVRQYERDYKS
KLSSGGAGAAVGQKRRAQEVEEGGEGGEGGEKKAKAVCDFDLPENFEKEL
AALVPRHVKFTGIKPGTLYYELREFFNKYGQVKYVSYVADSNVALIKFLL
PETAAKFLGEGEKREVSEVVFKEEKLVAEAPTEEEVREQLLAKNARKRSN
LENRGQGRREGGRHGGGGGGRGRGGGKGRGGGGRGRGGGRGRGGGRRN*
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mRNA from alignment at chr10:750188..751684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02730.1 ID=NO10G02730.1|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at chr10:750188..751684- (Nannochloropsis oceanica)
ATGACGACTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGA
ACCGGTCAAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAG
TCCCCGCCACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAAT
GAAGTTGCCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGC
TGCTGCTGCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAG
TCCCTGCTGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCG
CAGACATCGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAA
CTGGCGCCGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGG
GCTATGTCCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTC
ACCACCGACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAG
CACACTGCTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGG
CTTCAATCCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGAC
AGCGACAAGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGA
CGGCGCGGCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCT
TGGGTCCTGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAG
CTGACGGGGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAA
GGCATTGGCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGA
AGACGAATGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGC
AAACTGTCTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGC
GCAAGAAGTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGG
CAAAAGCGGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTG
GCCGCGCTTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTAC
GCTTTATTACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGT
ACGTCTCGTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTG
CCCGAGACGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAG
CGAGGTGGTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGG
AAGAGGTCCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAAC
TTGGAAAATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGG
AGGGGGAGGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGTGGGGGGC
GTGGTCGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAG
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Coding sequence (CDS) from alignment at chr10:750188..751684-

>NO10G02730.1 ID=NO10G02730.1|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr10:750188..751684- (Nannochloropsis oceanica)
ATGACGACTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGA
ACCGGTCAAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAG
TCCCCGCCACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAAT
GAAGTTGCCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGC
TGCTGCTGCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAG
TCCCTGCTGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCG
CAGACATCGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAA
CTGGCGCCGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGG
GCTATGTCCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTC
ACCACCGACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAG
CACACTGCTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGG
CTTCAATCCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGAC
AGCGACAAGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGA
CGGCGCGGCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCT
TGGGTCCTGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAG
CTGACGGGGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAA
GGCATTGGCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGA
AGACGAATGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGC
AAACTGTCTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGC
GCAAGAAGTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGG
CAAAAGCGGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTG
GCCGCGCTTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTAC
GCTTTATTACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGT
ACGTCTCGTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTG
CCCGAGACGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAG
CGAGGTGGTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGG
AAGAGGTCCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAAC
TTGGAAAATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGG
AGGGGGAGGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGTGGGGGGC
GTGGTCGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAG
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Synonyms
Publications