NO10G02610.1, NO10G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02610.1
Unique NameNO10G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1113
Alignment locationchr10:712365..713477 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:712365..713477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02610.1 vs.
Match: EWM25475.1 (cobalamin synthase [Nannochloropsis gaditana])

HSP 1 Score: 558.5 bits (1438), Expect = 1.500e-155
Identity = 290/381 (76.12%), Postives = 331/381 (86.88%), Query Frame = 0 
Query:    1 MAPNKRGGPLTRSSTASSGTK-----------SLNLNDHSQSVISKQEIEDRGAGTSEDTDTYLDMPFLRGEKRVFFTAVIFLTRLHTPRWCEADHHPAYLMRSMMHFPFLGLIIGIWAAVWLEAAAVLWSPYIAAAVSTMAAVWITGAFHEDGLADSLDAFGGGWGRLQILRIMTDTRVGTYALVGMILVMGMKLKSLECLLPVTDAGMVTQVSFLPFLTLSPASVALLVAHTVSRWTVLPLIYFCHYVQDEQSAKRGLYNWFADSQKLLTLPRLFAGTLVSIAVPLVLLPLEQALHVYLVVLVVTIASSYYGNLIIGGVIGDYLGATIQICELLIYLLLSADMKAAQANPSPLVVLLGMALLPILTSRPLIDFTMVDQC 371
            MAPN+RGGPLTRSS+ ++ TK           S  ++D+  SVISK+EIEDRGAGT EDTDTY+D+PFLRGEKRVFFTAVIFLTRL+ PRW EADHHPAYLMRSMMHFPFLGL +GIWAAVWLEAAAVLW+P++AAA ST+A VWITGAFHEDGLADSLDAFGGGWGRLQILRIMTDTRVGTYALVGMILVMGMKLKSLE L  ++ +  +T  +FLP L+LSPASVALLVAHTVSRWTVLPLIY CHY+QDEQSAKRGLYNWFADSQ+LLTLPRL  GTLV+I VP++LLP+EQA+ V+LVV++VT+ +SYYGNLIIGGVIGD+LGATIQ+CEL +YLLLSAD+K  Q NP PLV+L   A+LPILTSRPLIDF    +C
Sbjct:    1 MAPNRRGGPLTRSSSGNTPTKRTKATPKASETSSAVHDNDLSVISKKEIEDRGAGTDEDTDTYVDLPFLRGEKRVFFTAVIFLTRLNVPRWAEADHHPAYLMRSMMHFPFLGLCVGIWAAVWLEAAAVLWTPFVAAAASTLAGVWITGAFHEDGLADSLDAFGGGWGRLQILRIMTDTRVGTYALVGMILVMGMKLKSLEVLQSLSQSD-ITISTFLPSLSLSPASVALLVAHTVSRWTVLPLIYSCHYIQDEQSAKRGLYNWFADSQRLLTLPRLCLGTLVTILVPVLLLPVEQAMSVFLVVVLVTLGASYYGNLIIGGVIGDFLGATIQVCELCVYLLLSADLKQTQTNPFPLVMLAATAVLPILTSRPLIDFGFRAEC 380
The following BLAST results are available for this feature:
BLAST of NO10G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25475.11.500e-15576.12cobalamin synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02610NO10G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02610.1NO10G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02610.1.cds1NO10G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02610.1 ID=NO10G02610.1|Name=NO10G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
ATGGCCCCCAACAAGCGCGGTGGGCCCTTGACTCGGAGTAGCACGGCAAG
CAGCGGCACCAAAAGCCTTAATTTGAATGACCATTCCCAGTCCGTCATTT
CCAAGCAAGAGATCGAAGACCGAGGCGCTGGCACAAGCGAGGACACTGAC
ACGTATCTTGATATGCCTTTTTTACGCGGAGAGAAGCGCGTCTTTTTCAC
GGCTGTAATTTTCCTGACACGCCTACATACGCCTCGGTGGTGTGAAGCTG
ACCACCATCCCGCCTACCTCATGCGAAGTATGATGCACTTTCCTTTCTTG
GGGCTAATAATTGGCATCTGGGCCGCCGTCTGGCTTGAGGCCGCGGCGGT
GCTATGGTCCCCTTACATCGCTGCGGCCGTTTCGACCATGGCGGCGGTAT
GGATTACGGGGGCGTTTCATGAGGATGGGCTGGCGGATTCGCTGGATGCT
TTTGGTGGGGGATGGGGGAGGCTGCAAATTTTGCGCATTATGACTGACAC
GCGCGTGGGGACTTATGCGTTGGTGGGTATGATATTGGTGATGGGGATGA
AGTTGAAGAGCTTGGAGTGTTTGTTGCCGGTGACGGATGCAGGCATGGTA
ACTCAAGTGTCGTTCTTGCCTTTCTTGACCCTTTCTCCTGCGAGTGTCGC
ATTACTGGTCGCACACACAGTCTCCCGCTGGACGGTCCTCCCCTTGATCT
ACTTTTGTCACTACGTCCAAGACGAGCAAAGTGCCAAGCGGGGTTTGTAC
AATTGGTTTGCAGACTCTCAGAAGCTCTTGACCCTACCCCGTCTTTTTGC
TGGTACATTGGTCTCAATTGCCGTACCTCTGGTGTTGCTGCCTTTGGAGC
AGGCCCTGCATGTGTACCTAGTGGTGCTTGTCGTCACGATTGCGTCATCG
TATTACGGCAATTTGATTATTGGTGGTGTGATCGGTGATTATCTAGGGGC
GACCATTCAGATATGTGAGTTGCTGATCTACCTTCTTCTAAGCGCGGACA
TGAAGGCTGCACAGGCCAATCCGAGTCCGCTGGTAGTGCTGCTGGGCATG
GCCTTGCTGCCCATTTTGACTTCACGGCCCTTGATTGATTTTACGATGGT
TGACCAGTGCTGA
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protein sequence of NO10G02610.1

>NO10G02610.1-protein ID=NO10G02610.1-protein|Name=NO10G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MAPNKRGGPLTRSSTASSGTKSLNLNDHSQSVISKQEIEDRGAGTSEDTD
TYLDMPFLRGEKRVFFTAVIFLTRLHTPRWCEADHHPAYLMRSMMHFPFL
GLIIGIWAAVWLEAAAVLWSPYIAAAVSTMAAVWITGAFHEDGLADSLDA
FGGGWGRLQILRIMTDTRVGTYALVGMILVMGMKLKSLECLLPVTDAGMV
TQVSFLPFLTLSPASVALLVAHTVSRWTVLPLIYFCHYVQDEQSAKRGLY
NWFADSQKLLTLPRLFAGTLVSIAVPLVLLPLEQALHVYLVVLVVTIASS
YYGNLIIGGVIGDYLGATIQICELLIYLLLSADMKAAQANPSPLVVLLGM
ALLPILTSRPLIDFTMVDQC*
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mRNA from alignment at chr10:712365..713477+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02610.1 ID=NO10G02610.1|Name=NO10G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp|location=Sequence derived from alignment at chr10:712365..713477+ (Nannochloropsis oceanica)
ATGGCCCCCAACAAGCGCGGTGGGCCCTTGACTCGGAGTAGCACGGCAAG
CAGCGGCACCAAAAGCCTTAATTTGAATGACCATTCCCAGTCCGTCATTT
CCAAGCAAGAGATCGAAGACCGAGGCGCTGGCACAAGCGAGGACACTGAC
ACGTATCTTGATATGCCTTTTTTACGCGGAGAGAAGCGCGTCTTTTTCAC
GGCTGTAATTTTCCTGACACGCCTACATACGCCTCGGTGGTGTGAAGCTG
ACCACCATCCCGCCTACCTCATGCGAAGTATGATGCACTTTCCTTTCTTG
GGGCTAATAATTGGCATCTGGGCCGCCGTCTGGCTTGAGGCCGCGGCGGT
GCTATGGTCCCCTTACATCGCTGCGGCCGTTTCGACCATGGCGGCGGTAT
GGATTACGGGGGCGTTTCATGAGGATGGGCTGGCGGATTCGCTGGATGCT
TTTGGTGGGGGATGGGGGAGGCTGCAAATTTTGCGCATTATGACTGACAC
GCGCGTGGGGACTTATGCGTTGGTGGGTATGATATTGGTGATGGGGATGA
AGTTGAAGAGCTTGGAGTGTTTGTTGCCGGTGACGGATGCAGGCATGGTA
ACTCAAGTGTCGTTCTTGCCTTTCTTGACCCTTTCTCCTGCGAGTGTCGC
ATTACTGGTCGCACACACAGTCTCCCGCTGGACGGTCCTCCCCTTGATCT
ACTTTTGTCACTACGTCCAAGACGAGCAAAGTGCCAAGCGGGGTTTGTAC
AATTGGTTTGCAGACTCTCAGAAGCTCTTGACCCTACCCCGTCTTTTTGC
TGGTACATTGGTCTCAATTGCCGTACCTCTGGTGTTGCTGCCTTTGGAGC
AGGCCCTGCATGTGTACCTAGTGGTGCTTGTCGTCACGATTGCGTCATCG
TATTACGGCAATTTGATTATTGGTGGTGTGATCGGTGATTATCTAGGGGC
GACCATTCAGATATGTGAGTTGCTGATCTACCTTCTTCTAAGCGCGGACA
TGAAGGCTGCACAGGCCAATCCGAGTCCGCTGGTAGTGCTGCTGGGCATG
GCCTTGCTGCCCATTTTGACTTCACGGCCCTTGATTGATTTTACGATGGT
TGACCAGTGCTGA
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Coding sequence (CDS) from alignment at chr10:712365..713477+

>NO10G02610.1 ID=NO10G02610.1|Name=NO10G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=1113bp|location=Sequence derived from alignment at chr10:712365..713477+ (Nannochloropsis oceanica)
ATGGCCCCCAACAAGCGCGGTGGGCCCTTGACTCGGAGTAGCACGGCAAG
CAGCGGCACCAAAAGCCTTAATTTGAATGACCATTCCCAGTCCGTCATTT
CCAAGCAAGAGATCGAAGACCGAGGCGCTGGCACAAGCGAGGACACTGAC
ACGTATCTTGATATGCCTTTTTTACGCGGAGAGAAGCGCGTCTTTTTCAC
GGCTGTAATTTTCCTGACACGCCTACATACGCCTCGGTGGTGTGAAGCTG
ACCACCATCCCGCCTACCTCATGCGAAGTATGATGCACTTTCCTTTCTTG
GGGCTAATAATTGGCATCTGGGCCGCCGTCTGGCTTGAGGCCGCGGCGGT
GCTATGGTCCCCTTACATCGCTGCGGCCGTTTCGACCATGGCGGCGGTAT
GGATTACGGGGGCGTTTCATGAGGATGGGCTGGCGGATTCGCTGGATGCT
TTTGGTGGGGGATGGGGGAGGCTGCAAATTTTGCGCATTATGACTGACAC
GCGCGTGGGGACTTATGCGTTGGTGGGTATGATATTGGTGATGGGGATGA
AGTTGAAGAGCTTGGAGTGTTTGTTGCCGGTGACGGATGCAGGCATGGTA
ACTCAAGTGTCGTTCTTGCCTTTCTTGACCCTTTCTCCTGCGAGTGTCGC
ATTACTGGTCGCACACACAGTCTCCCGCTGGACGGTCCTCCCCTTGATCT
ACTTTTGTCACTACGTCCAAGACGAGCAAAGTGCCAAGCGGGGTTTGTAC
AATTGGTTTGCAGACTCTCAGAAGCTCTTGACCCTACCCCGTCTTTTTGC
TGGTACATTGGTCTCAATTGCCGTACCTCTGGTGTTGCTGCCTTTGGAGC
AGGCCCTGCATGTGTACCTAGTGGTGCTTGTCGTCACGATTGCGTCATCG
TATTACGGCAATTTGATTATTGGTGGTGTGATCGGTGATTATCTAGGGGC
GACCATTCAGATATGTGAGTTGCTGATCTACCTTCTTCTAAGCGCGGACA
TGAAGGCTGCACAGGCCAATCCGAGTCCGCTGGTAGTGCTGCTGGGCATG
GCCTTGCTGCCCATTTTGACTTCACGGCCCTTGATTGATTTTACGATGGT
TGACCAGTGCTGA
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Synonyms
Publications