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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:712360..715100 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02600.1 vs.
Match: EWM25471.1 (nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 532.7 bits (1371), Expect = 1.000e-147 Identity = 288/405 (71.11%), Postives = 327/405 (80.74%), Query Frame = 0
Query: 22 SASWLLDARREIDAKAKPPGSLGLLEDWAVKISNIQQTLQPHITAARLLIFAGDHGITISNPSVSAYPREVTLPIFTDIAKGTGASAILSRGNSCELNIIDVGMDT------PETEAQGPSSAASGAPHLTVTHAKVRRNSRDMTLGPALSPEERKAAEEVGADAVRRYIAGHALYHHHHKTL--DESTT--ATTHSRLAVCIGELGIGNTTAAAALVAALTGEPAASVTGRGTGLGFEGMCLKVKVIEKALTVNSKLIQSHDPSQILEAVGGLELAAMVGAYLEAGRHRMPILVDGFVSGAAALVALHRHPPLATFLFWTHQSDEKGAAVLLQAAATKTREAGEPVYPPPLKMNLRLGEGTGALLALPLLRSACAIMREMVTMTSVVKSGSSSSCSSSSERDGN 417
S+ WLL+AR+EIDAKAKPPGSLGLLEDWAVKIS+IQQTL+PHI+AARL++FAGDHGIT+S+P VSAYPREVT PIF DIA GTGASAILSR N CELNI+DVG+DT P + A GA H+TVT AKV R SRDMT GPAL+PEER AA+ VGA+AVRRY+A HA H + +E TT A++HSRLA+CIGELGIGNTTAAAALVAALTG PAA VTG+GTGL +G+ LK + IEKAL NS+L++ DP+ +LEAVGGLELAAMVGAYLEAGR RMPILVDGFVSGAAALVALH HPPLA FLFW+HQSDEKGA+VLLQA ATK +E P +PPPL M+LRLGEGTGALLALPLLRSACAIMREMVTM S+V+ G SE N
Sbjct: 19 SSPWLLEARQEIDAKAKPPGSLGLLEDWAVKISDIQQTLRPHISAARLVLFAGDHGITLSHPGVSAYPREVTRPIFQDIASGTGASAILSRSNGCELNIVDVGIDTCKDERYPYENGGASFTIAGGAHHITVTQAKVSRGSRDMTQGPALTPEERAAAQNVGAEAVRRYLAEHAKAHPAPGAISCNEDTTGGASSHSRLALCIGELGIGNTTAAAALVAALTGSPAALVTGKGTGLDPDGVNLKAQAIEKALAANSELVRERDPAHVLEAVGGLELAAMVGAYLEAGRWRMPILVDGFVSGAAALVALHFHPPLAAFLFWSHQSDEKGASVLLQAVATKAQEIDVPYFPPPLMMSLRLGEGTGALLALPLLRSACAIMREMVTMDSMVE-GKKECRGIDSETGSN 422
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02600.1 ID=NO10G02600.1|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2632bp CAGGGCCCGCACATAGGAGATGAATTCTCATAATGCGGCCCTGCTCCCGC CTCCGCCACTACCACCATCACCACCACCACCATCCGCCTCCTGGCTGCTC GATGCCCGGCGTGAGATCGATGCCAAGGCCAAGCCGCCCGGGTCGCTGGG TCTGCTGGAGGACTGGGCTGTCAAAATTTCCAATATTCAACAAACCCTTC AACCGCATATTACCGCGGCCCGCCTCTTGATCTTCGCAGGCGACCACGGC ATCACAATTTCAAATCCTTCAGTGTCAGCGTACCCCCGCGAGGTCACTCT TCCCATCTTCACGGACATCGCCAAGGGCACGGGAGCAAGTGCTATCCTCA GCCGAGGCAACAGCTGCGAGCTTAATATCATTGACGTGGGCATGGATACA CCAGAGACTGAAGCCCAAGGACCTTCTTCTGCTGCTAGTGGAGCGCCTCA CCTCACCGTGACCCACGCCAAAGTCCGTCGAAATTCCCGCGACATGACAT TAGGGCCAGCGCTGTCCCCGGAGGAAAGAAAGGCGGCGGAAGAGGTGGGG GCTGATGCTGTGCGACGGTATATTGCTGGACATGCCTTGTACCATCACCA TCATAAGACATTAGACGAGAGCACCACAGCCACCACTCATTCGCGGCTCG CTGTTTGCATCGGTGAACTCGGAATCGGTAATACCACAGCAGCCGCCGCC TTAGTCGCGGCATTGACAGGAGAGCCCGCAGCATCAGTAACGGGAAGGGG CACAGGTCTAGGGTTTGAAGGCATGTGCTTGAAAGTGAAAGTTATCGAGA AAGCACTGACTGTCAATAGCAAATTAATCCAGAGTCATGACCCTTCTCAA ATTTTAGAAGCTGTCGGAGGCCTCGAGCTTGCTGCCATGGTTGGCGCATA TCTAGAAGCTGGACGACACCGCATGCCTATCTTGGTGGACGGGTTCGTCT CAGGAGCTGCTGCTTTGGTTGCTCTCCACCGGCACCCGCCCTTGGCCACG TTCTTATTCTGGACGCACCAGTCTGACGAGAAAGGCGCAGCCGTCCTACT CCAAGCAGCAGCAACCAAAACACGCGAGGCAGGCGAGCCAGTTTATCCAC CGCCACTGAAGATGAACTTGAGGTTGGGGGAAGGAACAGGGGCTTTATTG GCATTGCCATTGTTGAGGTCTGCGTGTGCGATTATGCGGGAGATGGTAAC GATGACTTCGGTGGTCAAGAGTGGGAGCAGCAGCAGCTGTAGCAGCAGCA GTGAGAGGGACGGAAATCCCAGACTGTAATGTCTTCGAAATAAGAGGTTT TAAAGAATAGTAATGTAATTGATAAACTGCAATCAATATAGGAACAAACG AACAAAATACACCTGACAGGACTTGGTGCTTTCTTTTCTTTCATCATCTG TCTCCAACCTGGTGCACTCACCTCATACCTATCTATCTTCCCTTATCTAT GTACACGTGGGAGAAACGCAGTTCAACTATACATTTCTCATTCCTATCAC TCAGCACTGGTCACTCAGCACTGGTCAACCATCGTAAAATCAATCAAGGG CCGTGAAGTCAAAATGGGCAGCAAGGCCATGCCCAGCAGCACTACCAGCG GACTCGGATTGGCCTGTGCAGCCTTCATGTCCGCGCTTAGAAGAAGGTAG ATCAGCAACTCACATATCTGAATGGTCGCCCCTAGATAATCACCGATCAC ACCACCAATAATCAAATTGCCGTAATACGATGACGCAATCGTGACGACAA GCACCACTAGGTACACATGCAGGGCCTGCTCCAAAGGCAGCAACACCAGA GGTACGGCAATTGAGACCAATGTACCAGCAAAAAGACGGGGTAGGGTCAA GAGCTTCTGAGAGTCTGCAAACCAATTGTACAAACCCCGCTTGGCACTTT GCTCGTCTTGGACGTAGTGACAAAAGTAGATCAAGGGGAGGACCGTCCAG CGGGAGACTGTGTGTGCGACCAGTAATGCGACACTCGCAGGAGAAAGGGT CAAGAAAGGCAAGAACGACACTTGAGTTACCATGCCTGCATCCGTCACCG GCAACAAACACTCCAAGCTCTTCAACTTCATCCCCATCACCAATATCATA CCCACCAACGCATAAGTCCCCACGCGCGTGTCAGTCATAATGCGCAAAAT TTGCAGCCTCCCCCATCCCCCACCAAAAGCATCCAGCGAATCCGCCAGCC CATCCTCATGAAACGCCCCCGTAATCCATACCGCCGCCATGGTCGAAACG GCCGCAGCGATGTAAGGGGACCATAGCACCGCCGCGGCCTCAAGCCAGAC GGCGGCCCAGATGCCAATTATTAGCCCCAAGAAAGGAAAGTGCATCATAC TTCGCATGAGGTAGGCGGGATGGTGGTCAGCTTCACACCACCGAGGCGTA TGTAGGCGTGTCAGGAAAATTACAGCCGTGAAAAAGACGCGCTTCTCTCC GCGTAAAAAAGGCATATCAAGATACGTGTCAGTGTCCTCGCTTGTGCCAG CGCCTCGGTCTTCGATCTCTTGCTTGGAAATGACGGACTGGGAATGGTCA TTCAAATTAAGGCTTTTGGTGCCGCTGCTTGCCGTGCTACTCCGAGTCAA GGGCCCACCGCGCTTGTTGGGGGCCATGCTGT back to topprotein sequence of NO10G02600.1 >NO10G02600.1-protein ID=NO10G02600.1-protein|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp MNSHNAALLPPPPLPPSPPPPSASWLLDARREIDAKAKPPGSLGLLEDWA VKISNIQQTLQPHITAARLLIFAGDHGITISNPSVSAYPREVTLPIFTDI AKGTGASAILSRGNSCELNIIDVGMDTPETEAQGPSSAASGAPHLTVTHA KVRRNSRDMTLGPALSPEERKAAEEVGADAVRRYIAGHALYHHHHKTLDE STTATTHSRLAVCIGELGIGNTTAAAALVAALTGEPAASVTGRGTGLGFE GMCLKVKVIEKALTVNSKLIQSHDPSQILEAVGGLELAAMVGAYLEAGRH RMPILVDGFVSGAAALVALHRHPPLATFLFWTHQSDEKGAAVLLQAAATK TREAGEPVYPPPLKMNLRLGEGTGALLALPLLRSACAIMREMVTMTSVVK SGSSSSCSSSSERDGNPRL* back to topmRNA from alignment at chr10:712360..715100- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02600.1 ID=NO10G02600.1|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp|location=Sequence derived from alignment at chr10:712360..715100- (Nannochloropsis oceanica) CAGGGCCCGCACATAGGAGATGAATTCTCATAATGCGGCCCTGCTCCCGC
CTCCGCCACTACCACCATCACCACCACCACCATCCGCCTCCTGGCTGCTC
GATGCCCGGCGTGAGATCGATGCCAAGGCCAAGCCGCCCGGGTCGCTGGG
TCTGCTGGAGGACTGGGCTGTCAAAATTTCCAATATTCAACAAACCCTTC
AACCGCATATTACCGCGGCCCGCCTCTTGATCTTCGCAGGTGATGTTGGG
ATTCATAAATGTAGAAGGGCATATCTACCCAGACAGCAACAAGGGGTGAA
ATATTGTGCTACCAGCTTCTAAGACAGCCTCAACCAACATATACATAGGC
GACCACGGCATCACAATTTCAAATCCTTCAGTGTCAGCGTACCCCCGCGA
GGTCACTCTTCCCATCTTCACGGACATCGCCAAGGGCACGGGAGCAAGTG
CTATCCTCAGCCGAGGCAACAGCTGCGAGCTTAATATCATTGACGTGGGC
ATGGATACACCAGAGACTGAAGCCCAAGGACCTTCTTCTGCTGCTAGTGG
AGCGCCTCACCTCACCGTGACCCACGCCAAAGTCCGTCGAAATTCCCGCG
ACATGACATTAGGGCCAGCGCTGTCCCCGGAGGAAAGAAAGGCGGCGGAA
GAGGTGGGGGCTGATGCTGTGCGACGGTATATTGCTGGACATGCCTTGTA
CCATCACCATCATAAGACATTAGACGAGAGCACCACAGCCACCACTCATT
CGCGGCTCGCTGTTTGCATCGGTGAACTCGGAATCGGTAATACCACAGCA
GCCGCCGCCTTAGTCGCGGCATTGACAGGAGAGCCCGCAGCATCAGTAAC
GGGAAGGGGCACAGGTCTAGGGTTTGAAGGCATGTGCTTGAAAGTGAAAG
TTATCGAGAAAGCACTGACTGTCAATAGCAAATTAATCCAGAGTCATGAC
CCTTCTCAAATTTTAGAAGCTGTCGGAGGCCTCGAGCTTGCTGCCATGGT
TGGCGCATATCTAGAAGCTGGACGACACCGCATGCCTATCTTGGTGGACG
GGTTCGTCTCAGGAGCTGCTGCTTTGGTTGCTCTCCACCGGCACCCGCCC
TTGGCCACGTTCTTATTCTGGACGCACCAGTCTGACGAGAAAGGCGCAGC
CGTCCTACTCCAAGCAGCAGCAACCAAAACACGCGAGGCAGGCGAGCCAG
TTTATCCACCGCCACTGAAGATGAACTTGAGGTTGGGGGAAGGAACAGGG
GCTTTATTGGCATTGCCATTGTTGAGGTCTGCGTGTGCGATTATGCGGGA
GATGGTAACGATGACTTCGGTGGTCAAGAGTGGGAGCAGCAGCAGCTGTA
GCAGCAGCAGTGAGAGGGACGGAAATCCCAGACTGTAATGTCTTCGAAAT
AAGAGGTTTTAAAGAATAGTAATGTAATTGATAAACTGCAATCAATATAG
GAACAAACGAACAAAATACACCTGACAGGACTTGGTGCTTTCTTTTCTTT
CATCATCTGTCTCCAACCTGGTGCACTCACCTCATACCTATCTATCTTCC
CTTATCTATGTACACGTGGGAGAAACGCAGTTCAACTATACATTTCTCAT
TCCTATCACTCAGCACTGGTCACTCAGCACTGGTCAACCATCGTAAAATC
AATCAAGGGCCGTGAAGTCAAAATGGGCAGCAAGGCCATGCCCAGCAGCA
CTACCAGCGGACTCGGATTGGCCTGTGCAGCCTTCATGTCCGCGCTTAGA
AGAAGGTAGATCAGCAACTCACATATCTGAATGGTCGCCCCTAGATAATC
ACCGATCACACCACCAATAATCAAATTGCCGTAATACGATGACGCAATCG
TGACGACAAGCACCACTAGGTACACATGCAGGGCCTGCTCCAAAGGCAGC
AACACCAGAGGTACGGCAATTGAGACCAATGTACCAGCAAAAAGACGGGG
TAGGGTCAAGAGCTTCTGAGAGTCTGCAAACCAATTGTACAAACCCCGCT
TGGCACTTTGCTCGTCTTGGACGTAGTGACAAAAGTAGATCAAGGGGAGG
ACCGTCCAGCGGGAGACTGTGTGTGCGACCAGTAATGCGACACTCGCAGG
AGAAAGGGTCAAGAAAGGCAAGAACGACACTTGAGTTACCATGCCTGCAT
CCGTCACCGGCAACAAACACTCCAAGCTCTTCAACTTCATCCCCATCACC
AATATCATACCCACCAACGCATAAGTCCCCACGCGCGTGTCAGTCATAAT
GCGCAAAATTTGCAGCCTCCCCCATCCCCCACCAAAAGCATCCAGCGAAT
CCGCCAGCCCATCCTCATGAAACGCCCCCGTAATCCATACCGCCGCCATG
GTCGAAACGGCCGCAGCGATGTAAGGGGACCATAGCACCGCCGCGGCCTC
AAGCCAGACGGCGGCCCAGATGCCAATTATTAGCCCCAAGAAAGGAAAGT
GCATCATACTTCGCATGAGGTAGGCGGGATGGTGGTCAGCTTCACACCAC
CGAGGCGTATGTAGGCGTGTCAGGAAAATTACAGCCGTGAAAAAGACGCG
CTTCTCTCCGCGTAAAAAAGGCATATCAAGATACGTGTCAGTGTCCTCGC
TTGTGCCAGCGCCTCGGTCTTCGATCTCTTGCTTGGAAATGACGGACTGG
GAATGGTCATTCAAATTAAGGCTTTTGGTGCCGCTGCTTGCCGTGCTACT
CCGAGTCAAGGGCCCACCGCGCTTGTTGGGGGCCATGCTGT back to topCoding sequence (CDS) from alignment at chr10:712360..715100- >NO10G02600.1 ID=NO10G02600.1|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr10:712360..715100- (Nannochloropsis oceanica) ATGAATTCTCATAATGCGGCCCTGCTCCCGCCTCCGCCACTACCACCATC ACCACCACCACCATCCGCCTCCTGGCTGCTCGATGCCCGGCGTGAGATCG ATGCCAAGGCCAAGCCGCCCGGGTCGCTGGGTCTGCTGGAGGACTGGGCT GTCAAAATTTCCAATATTCAACAAACCCTTCAACCGCATATTACCGCGGC CCGCCTCTTGATCTTCGCAGGCGACCACGGCATCACAATTTCAAATCCTT CAGTGTCAGCGTACCCCCGCGAGGTCACTCTTCCCATCTTCACGGACATC GCCAAGGGCACGGGAGCAAGTGCTATCCTCAGCCGAGGCAACAGCTGCGA GCTTAATATCATTGACGTGGGCATGGATACACCAGAGACTGAAGCCCAAG GACCTTCTTCTGCTGCTAGTGGAGCGCCTCACCTCACCGTGACCCACGCC AAAGTCCGTCGAAATTCCCGCGACATGACATTAGGGCCAGCGCTGTCCCC GGAGGAAAGAAAGGCGGCGGAAGAGGTGGGGGCTGATGCTGTGCGACGGT ATATTGCTGGACATGCCTTGTACCATCACCATCATAAGACATTAGACGAG AGCACCACAGCCACCACTCATTCGCGGCTCGCTGTTTGCATCGGTGAACT CGGAATCGGTAATACCACAGCAGCCGCCGCCTTAGTCGCGGCATTGACAG GAGAGCCCGCAGCATCAGTAACGGGAAGGGGCACAGGTCTAGGGTTTGAA GGCATGTGCTTGAAAGTGAAAGTTATCGAGAAAGCACTGACTGTCAATAG CAAATTAATCCAGAGTCATGACCCTTCTCAAATTTTAGAAGCTGTCGGAG GCCTCGAGCTTGCTGCCATGGTTGGCGCATATCTAGAAGCTGGACGACAC CGCATGCCTATCTTGGTGGACGGGTTCGTCTCAGGAGCTGCTGCTTTGGT TGCTCTCCACCGGCACCCGCCCTTGGCCACGTTCTTATTCTGGACGCACC AGTCTGACGAGAAAGGCGCAGCCGTCCTACTCCAAGCAGCAGCAACCAAA ACACGCGAGGCAGGCGAGCCAGTTTATCCACCGCCACTGAAGATGAACTT GAGGTTGGGGGAAGGAACAGGGGCTTTATTGGCATTGCCATTGTTGAGGT CTGCGTGTGCGATTATGCGGGAGATGGTAACGATGACTTCGGTGGTCAAG AGTGGGAGCAGCAGCAGCTGTAGCAGCAGCAGTGAGAGGGACGGAAATCC CAGACTGTAA back to top
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