NO10G02600.1, NO10G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02600.1
Unique NameNO10G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2632
Alignment locationchr10:712360..715100 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:712360..715100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02600.1 vs.
Match: EWM25471.1 (nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 532.7 bits (1371), Expect = 1.000e-147
Identity = 288/405 (71.11%), Postives = 327/405 (80.74%), Query Frame = 0
Query:   22 SASWLLDARREIDAKAKPPGSLGLLEDWAVKISNIQQTLQPHITAARLLIFAGDHGITISNPSVSAYPREVTLPIFTDIAKGTGASAILSRGNSCELNIIDVGMDT------PETEAQGPSSAASGAPHLTVTHAKVRRNSRDMTLGPALSPEERKAAEEVGADAVRRYIAGHALYHHHHKTL--DESTT--ATTHSRLAVCIGELGIGNTTAAAALVAALTGEPAASVTGRGTGLGFEGMCLKVKVIEKALTVNSKLIQSHDPSQILEAVGGLELAAMVGAYLEAGRHRMPILVDGFVSGAAALVALHRHPPLATFLFWTHQSDEKGAAVLLQAAATKTREAGEPVYPPPLKMNLRLGEGTGALLALPLLRSACAIMREMVTMTSVVKSGSSSSCSSSSERDGN 417
            S+ WLL+AR+EIDAKAKPPGSLGLLEDWAVKIS+IQQTL+PHI+AARL++FAGDHGIT+S+P VSAYPREVT PIF DIA GTGASAILSR N CELNI+DVG+DT      P        + A GA H+TVT AKV R SRDMT GPAL+PEER AA+ VGA+AVRRY+A HA  H     +  +E TT  A++HSRLA+CIGELGIGNTTAAAALVAALTG PAA VTG+GTGL  +G+ LK + IEKAL  NS+L++  DP+ +LEAVGGLELAAMVGAYLEAGR RMPILVDGFVSGAAALVALH HPPLA FLFW+HQSDEKGA+VLLQA ATK +E   P +PPPL M+LRLGEGTGALLALPLLRSACAIMREMVTM S+V+ G        SE   N
Sbjct:   19 SSPWLLEARQEIDAKAKPPGSLGLLEDWAVKISDIQQTLRPHISAARLVLFAGDHGITLSHPGVSAYPREVTRPIFQDIASGTGASAILSRSNGCELNIVDVGIDTCKDERYPYENGGASFTIAGGAHHITVTQAKVSRGSRDMTQGPALTPEERAAAQNVGAEAVRRYLAEHAKAHPAPGAISCNEDTTGGASSHSRLALCIGELGIGNTTAAAALVAALTGSPAALVTGKGTGLDPDGVNLKAQAIEKALAANSELVRERDPAHVLEAVGGLELAAMVGAYLEAGRWRMPILVDGFVSGAAALVALHFHPPLAAFLFWSHQSDEKGASVLLQAVATKAQEIDVPYFPPPLMMSLRLGEGTGALLALPLLRSACAIMREMVTMDSMVE-GKKECRGIDSETGSN 422          
The following BLAST results are available for this feature:
BLAST of NO10G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25471.11.000e-14771.11nicotinate-nucleotide--dimethylbenzimidazole phosp... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02600NO10G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02600.1NO10G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02600.1.cds1NO10G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02600.1.cds2NO10G02600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02600.1 ID=NO10G02600.1|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2632bp
CAGGGCCCGCACATAGGAGATGAATTCTCATAATGCGGCCCTGCTCCCGC
CTCCGCCACTACCACCATCACCACCACCACCATCCGCCTCCTGGCTGCTC
GATGCCCGGCGTGAGATCGATGCCAAGGCCAAGCCGCCCGGGTCGCTGGG
TCTGCTGGAGGACTGGGCTGTCAAAATTTCCAATATTCAACAAACCCTTC
AACCGCATATTACCGCGGCCCGCCTCTTGATCTTCGCAGGCGACCACGGC
ATCACAATTTCAAATCCTTCAGTGTCAGCGTACCCCCGCGAGGTCACTCT
TCCCATCTTCACGGACATCGCCAAGGGCACGGGAGCAAGTGCTATCCTCA
GCCGAGGCAACAGCTGCGAGCTTAATATCATTGACGTGGGCATGGATACA
CCAGAGACTGAAGCCCAAGGACCTTCTTCTGCTGCTAGTGGAGCGCCTCA
CCTCACCGTGACCCACGCCAAAGTCCGTCGAAATTCCCGCGACATGACAT
TAGGGCCAGCGCTGTCCCCGGAGGAAAGAAAGGCGGCGGAAGAGGTGGGG
GCTGATGCTGTGCGACGGTATATTGCTGGACATGCCTTGTACCATCACCA
TCATAAGACATTAGACGAGAGCACCACAGCCACCACTCATTCGCGGCTCG
CTGTTTGCATCGGTGAACTCGGAATCGGTAATACCACAGCAGCCGCCGCC
TTAGTCGCGGCATTGACAGGAGAGCCCGCAGCATCAGTAACGGGAAGGGG
CACAGGTCTAGGGTTTGAAGGCATGTGCTTGAAAGTGAAAGTTATCGAGA
AAGCACTGACTGTCAATAGCAAATTAATCCAGAGTCATGACCCTTCTCAA
ATTTTAGAAGCTGTCGGAGGCCTCGAGCTTGCTGCCATGGTTGGCGCATA
TCTAGAAGCTGGACGACACCGCATGCCTATCTTGGTGGACGGGTTCGTCT
CAGGAGCTGCTGCTTTGGTTGCTCTCCACCGGCACCCGCCCTTGGCCACG
TTCTTATTCTGGACGCACCAGTCTGACGAGAAAGGCGCAGCCGTCCTACT
CCAAGCAGCAGCAACCAAAACACGCGAGGCAGGCGAGCCAGTTTATCCAC
CGCCACTGAAGATGAACTTGAGGTTGGGGGAAGGAACAGGGGCTTTATTG
GCATTGCCATTGTTGAGGTCTGCGTGTGCGATTATGCGGGAGATGGTAAC
GATGACTTCGGTGGTCAAGAGTGGGAGCAGCAGCAGCTGTAGCAGCAGCA
GTGAGAGGGACGGAAATCCCAGACTGTAATGTCTTCGAAATAAGAGGTTT
TAAAGAATAGTAATGTAATTGATAAACTGCAATCAATATAGGAACAAACG
AACAAAATACACCTGACAGGACTTGGTGCTTTCTTTTCTTTCATCATCTG
TCTCCAACCTGGTGCACTCACCTCATACCTATCTATCTTCCCTTATCTAT
GTACACGTGGGAGAAACGCAGTTCAACTATACATTTCTCATTCCTATCAC
TCAGCACTGGTCACTCAGCACTGGTCAACCATCGTAAAATCAATCAAGGG
CCGTGAAGTCAAAATGGGCAGCAAGGCCATGCCCAGCAGCACTACCAGCG
GACTCGGATTGGCCTGTGCAGCCTTCATGTCCGCGCTTAGAAGAAGGTAG
ATCAGCAACTCACATATCTGAATGGTCGCCCCTAGATAATCACCGATCAC
ACCACCAATAATCAAATTGCCGTAATACGATGACGCAATCGTGACGACAA
GCACCACTAGGTACACATGCAGGGCCTGCTCCAAAGGCAGCAACACCAGA
GGTACGGCAATTGAGACCAATGTACCAGCAAAAAGACGGGGTAGGGTCAA
GAGCTTCTGAGAGTCTGCAAACCAATTGTACAAACCCCGCTTGGCACTTT
GCTCGTCTTGGACGTAGTGACAAAAGTAGATCAAGGGGAGGACCGTCCAG
CGGGAGACTGTGTGTGCGACCAGTAATGCGACACTCGCAGGAGAAAGGGT
CAAGAAAGGCAAGAACGACACTTGAGTTACCATGCCTGCATCCGTCACCG
GCAACAAACACTCCAAGCTCTTCAACTTCATCCCCATCACCAATATCATA
CCCACCAACGCATAAGTCCCCACGCGCGTGTCAGTCATAATGCGCAAAAT
TTGCAGCCTCCCCCATCCCCCACCAAAAGCATCCAGCGAATCCGCCAGCC
CATCCTCATGAAACGCCCCCGTAATCCATACCGCCGCCATGGTCGAAACG
GCCGCAGCGATGTAAGGGGACCATAGCACCGCCGCGGCCTCAAGCCAGAC
GGCGGCCCAGATGCCAATTATTAGCCCCAAGAAAGGAAAGTGCATCATAC
TTCGCATGAGGTAGGCGGGATGGTGGTCAGCTTCACACCACCGAGGCGTA
TGTAGGCGTGTCAGGAAAATTACAGCCGTGAAAAAGACGCGCTTCTCTCC
GCGTAAAAAAGGCATATCAAGATACGTGTCAGTGTCCTCGCTTGTGCCAG
CGCCTCGGTCTTCGATCTCTTGCTTGGAAATGACGGACTGGGAATGGTCA
TTCAAATTAAGGCTTTTGGTGCCGCTGCTTGCCGTGCTACTCCGAGTCAA
GGGCCCACCGCGCTTGTTGGGGGCCATGCTGT
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protein sequence of NO10G02600.1

>NO10G02600.1-protein ID=NO10G02600.1-protein|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MNSHNAALLPPPPLPPSPPPPSASWLLDARREIDAKAKPPGSLGLLEDWA
VKISNIQQTLQPHITAARLLIFAGDHGITISNPSVSAYPREVTLPIFTDI
AKGTGASAILSRGNSCELNIIDVGMDTPETEAQGPSSAASGAPHLTVTHA
KVRRNSRDMTLGPALSPEERKAAEEVGADAVRRYIAGHALYHHHHKTLDE
STTATTHSRLAVCIGELGIGNTTAAAALVAALTGEPAASVTGRGTGLGFE
GMCLKVKVIEKALTVNSKLIQSHDPSQILEAVGGLELAAMVGAYLEAGRH
RMPILVDGFVSGAAALVALHRHPPLATFLFWTHQSDEKGAAVLLQAAATK
TREAGEPVYPPPLKMNLRLGEGTGALLALPLLRSACAIMREMVTMTSVVK
SGSSSSCSSSSERDGNPRL*
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mRNA from alignment at chr10:712360..715100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02600.1 ID=NO10G02600.1|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp|location=Sequence derived from alignment at chr10:712360..715100- (Nannochloropsis oceanica)
CAGGGCCCGCACATAGGAGATGAATTCTCATAATGCGGCCCTGCTCCCGC CTCCGCCACTACCACCATCACCACCACCACCATCCGCCTCCTGGCTGCTC GATGCCCGGCGTGAGATCGATGCCAAGGCCAAGCCGCCCGGGTCGCTGGG TCTGCTGGAGGACTGGGCTGTCAAAATTTCCAATATTCAACAAACCCTTC AACCGCATATTACCGCGGCCCGCCTCTTGATCTTCGCAGGTGATGTTGGG ATTCATAAATGTAGAAGGGCATATCTACCCAGACAGCAACAAGGGGTGAA ATATTGTGCTACCAGCTTCTAAGACAGCCTCAACCAACATATACATAGGC GACCACGGCATCACAATTTCAAATCCTTCAGTGTCAGCGTACCCCCGCGA GGTCACTCTTCCCATCTTCACGGACATCGCCAAGGGCACGGGAGCAAGTG CTATCCTCAGCCGAGGCAACAGCTGCGAGCTTAATATCATTGACGTGGGC ATGGATACACCAGAGACTGAAGCCCAAGGACCTTCTTCTGCTGCTAGTGG AGCGCCTCACCTCACCGTGACCCACGCCAAAGTCCGTCGAAATTCCCGCG ACATGACATTAGGGCCAGCGCTGTCCCCGGAGGAAAGAAAGGCGGCGGAA GAGGTGGGGGCTGATGCTGTGCGACGGTATATTGCTGGACATGCCTTGTA CCATCACCATCATAAGACATTAGACGAGAGCACCACAGCCACCACTCATT CGCGGCTCGCTGTTTGCATCGGTGAACTCGGAATCGGTAATACCACAGCA GCCGCCGCCTTAGTCGCGGCATTGACAGGAGAGCCCGCAGCATCAGTAAC GGGAAGGGGCACAGGTCTAGGGTTTGAAGGCATGTGCTTGAAAGTGAAAG TTATCGAGAAAGCACTGACTGTCAATAGCAAATTAATCCAGAGTCATGAC CCTTCTCAAATTTTAGAAGCTGTCGGAGGCCTCGAGCTTGCTGCCATGGT TGGCGCATATCTAGAAGCTGGACGACACCGCATGCCTATCTTGGTGGACG GGTTCGTCTCAGGAGCTGCTGCTTTGGTTGCTCTCCACCGGCACCCGCCC TTGGCCACGTTCTTATTCTGGACGCACCAGTCTGACGAGAAAGGCGCAGC CGTCCTACTCCAAGCAGCAGCAACCAAAACACGCGAGGCAGGCGAGCCAG TTTATCCACCGCCACTGAAGATGAACTTGAGGTTGGGGGAAGGAACAGGG GCTTTATTGGCATTGCCATTGTTGAGGTCTGCGTGTGCGATTATGCGGGA GATGGTAACGATGACTTCGGTGGTCAAGAGTGGGAGCAGCAGCAGCTGTA GCAGCAGCAGTGAGAGGGACGGAAATCCCAGACTGTAATGTCTTCGAAAT AAGAGGTTTTAAAGAATAGTAATGTAATTGATAAACTGCAATCAATATAG GAACAAACGAACAAAATACACCTGACAGGACTTGGTGCTTTCTTTTCTTT CATCATCTGTCTCCAACCTGGTGCACTCACCTCATACCTATCTATCTTCC CTTATCTATGTACACGTGGGAGAAACGCAGTTCAACTATACATTTCTCAT TCCTATCACTCAGCACTGGTCACTCAGCACTGGTCAACCATCGTAAAATC AATCAAGGGCCGTGAAGTCAAAATGGGCAGCAAGGCCATGCCCAGCAGCA CTACCAGCGGACTCGGATTGGCCTGTGCAGCCTTCATGTCCGCGCTTAGA AGAAGGTAGATCAGCAACTCACATATCTGAATGGTCGCCCCTAGATAATC ACCGATCACACCACCAATAATCAAATTGCCGTAATACGATGACGCAATCG TGACGACAAGCACCACTAGGTACACATGCAGGGCCTGCTCCAAAGGCAGC AACACCAGAGGTACGGCAATTGAGACCAATGTACCAGCAAAAAGACGGGG TAGGGTCAAGAGCTTCTGAGAGTCTGCAAACCAATTGTACAAACCCCGCT TGGCACTTTGCTCGTCTTGGACGTAGTGACAAAAGTAGATCAAGGGGAGG ACCGTCCAGCGGGAGACTGTGTGTGCGACCAGTAATGCGACACTCGCAGG AGAAAGGGTCAAGAAAGGCAAGAACGACACTTGAGTTACCATGCCTGCAT CCGTCACCGGCAACAAACACTCCAAGCTCTTCAACTTCATCCCCATCACC AATATCATACCCACCAACGCATAAGTCCCCACGCGCGTGTCAGTCATAAT GCGCAAAATTTGCAGCCTCCCCCATCCCCCACCAAAAGCATCCAGCGAAT CCGCCAGCCCATCCTCATGAAACGCCCCCGTAATCCATACCGCCGCCATG GTCGAAACGGCCGCAGCGATGTAAGGGGACCATAGCACCGCCGCGGCCTC AAGCCAGACGGCGGCCCAGATGCCAATTATTAGCCCCAAGAAAGGAAAGT GCATCATACTTCGCATGAGGTAGGCGGGATGGTGGTCAGCTTCACACCAC CGAGGCGTATGTAGGCGTGTCAGGAAAATTACAGCCGTGAAAAAGACGCG CTTCTCTCCGCGTAAAAAAGGCATATCAAGATACGTGTCAGTGTCCTCGC TTGTGCCAGCGCCTCGGTCTTCGATCTCTTGCTTGGAAATGACGGACTGG GAATGGTCATTCAAATTAAGGCTTTTGGTGCCGCTGCTTGCCGTGCTACT CCGAGTCAAGGGCCCACCGCGCTTGTTGGGGGCCATGCTGT
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Coding sequence (CDS) from alignment at chr10:712360..715100-

>NO10G02600.1 ID=NO10G02600.1|Name=NO10G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr10:712360..715100- (Nannochloropsis oceanica)
ATGAATTCTCATAATGCGGCCCTGCTCCCGCCTCCGCCACTACCACCATC
ACCACCACCACCATCCGCCTCCTGGCTGCTCGATGCCCGGCGTGAGATCG
ATGCCAAGGCCAAGCCGCCCGGGTCGCTGGGTCTGCTGGAGGACTGGGCT
GTCAAAATTTCCAATATTCAACAAACCCTTCAACCGCATATTACCGCGGC
CCGCCTCTTGATCTTCGCAGGCGACCACGGCATCACAATTTCAAATCCTT
CAGTGTCAGCGTACCCCCGCGAGGTCACTCTTCCCATCTTCACGGACATC
GCCAAGGGCACGGGAGCAAGTGCTATCCTCAGCCGAGGCAACAGCTGCGA
GCTTAATATCATTGACGTGGGCATGGATACACCAGAGACTGAAGCCCAAG
GACCTTCTTCTGCTGCTAGTGGAGCGCCTCACCTCACCGTGACCCACGCC
AAAGTCCGTCGAAATTCCCGCGACATGACATTAGGGCCAGCGCTGTCCCC
GGAGGAAAGAAAGGCGGCGGAAGAGGTGGGGGCTGATGCTGTGCGACGGT
ATATTGCTGGACATGCCTTGTACCATCACCATCATAAGACATTAGACGAG
AGCACCACAGCCACCACTCATTCGCGGCTCGCTGTTTGCATCGGTGAACT
CGGAATCGGTAATACCACAGCAGCCGCCGCCTTAGTCGCGGCATTGACAG
GAGAGCCCGCAGCATCAGTAACGGGAAGGGGCACAGGTCTAGGGTTTGAA
GGCATGTGCTTGAAAGTGAAAGTTATCGAGAAAGCACTGACTGTCAATAG
CAAATTAATCCAGAGTCATGACCCTTCTCAAATTTTAGAAGCTGTCGGAG
GCCTCGAGCTTGCTGCCATGGTTGGCGCATATCTAGAAGCTGGACGACAC
CGCATGCCTATCTTGGTGGACGGGTTCGTCTCAGGAGCTGCTGCTTTGGT
TGCTCTCCACCGGCACCCGCCCTTGGCCACGTTCTTATTCTGGACGCACC
AGTCTGACGAGAAAGGCGCAGCCGTCCTACTCCAAGCAGCAGCAACCAAA
ACACGCGAGGCAGGCGAGCCAGTTTATCCACCGCCACTGAAGATGAACTT
GAGGTTGGGGGAAGGAACAGGGGCTTTATTGGCATTGCCATTGTTGAGGT
CTGCGTGTGCGATTATGCGGGAGATGGTAACGATGACTTCGGTGGTCAAG
AGTGGGAGCAGCAGCAGCTGTAGCAGCAGCAGTGAGAGGGACGGAAATCC
CAGACTGTAA
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Synonyms
Publications