NO10G02450.1, NO10G02450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02450.1
Unique NameNO10G02450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1215
Alignment locationchr10:665194..666524 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:665194..666524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02450.1 vs.
Match: OQR94962.1 (myosin-like protein [Achlya hypogyna])

HSP 1 Score: 229.9 bits (585), Expect = 1.400e-56
Identity = 158/353 (44.76%), Postives = 201/353 (56.94%), Query Frame = 0 
Query:   52 LPPHIYAVADAAYRAMTGFFGATQGFSDQSILVSGESGAGKTESSKFIMSYLAVVATQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVMEEEGGIASQVLQSNPILESFGNARTIRNENSSRFGKFIELHFADAVGSGVGAAGKGILMGAKISTYLLKKVRIVSQAEGERNYHIFYQLLKGADAKERVALGLGEFVKEEGGKKEREEVQEVKFHYLSHSGCMSRQDGTDDADDYQRTRKAMTIMGFGTEEQARVMKLVAAILHLGNLRFAMRKQGGSSGNSCSDADFIPEAATVAAAASVATAERIADLLEVDPLAFKQSLTDRTIQAGREAVNVRLSPAQAEGAREALAKAI 405
            LPPHIYA+AD AYR M           DQSILVSGESGAGKTE++K I++Y+A + T                                     +A +VL+ NPILE+FGNART RN NSSRFGKFI L F +AVGS         L+GA ISTYLL++VRIVSQA GERNYHIFY+LL+GA   E  ALGL              +VQ+ K  YL+ S C  RQDG DD++ Y +TR AMT +G  +EEQ  V++LVAA+L LGNL FA  ++GG +    +D            A+ VAT   +  LL +D  A +  LT + I+AG + +   LS  +A   R+A+AK I
Sbjct:   76 LPPHIYAIADHAYREMHR--------GDQSILVSGESGAGKTETTKCILNYVATLVTSATSSD-------------------------------LAQRVLECNPILEAFGNARTNRNNNSSRFGKFIRLEF-EAVGS---------LLGASISTYLLERVRIVSQAIGERNYHIFYELLRGASPNELAALGL-------------SQVQDYK--YLNQSQCYDRQDGVDDSEQYAKTRHAMTTIGMSSEEQTDVLQLVAAVLLLGNLEFA--RKGGEASQLSND-----------GASVVAT---VCGLLGIDGTAMEHGLTTKQIKAGGDRITTALSVVEASATRDAVAKTI 348
The following BLAST results are available for this feature:
BLAST of NO10G02450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQR94962.11.400e-5644.76myosin-like protein [Achlya hypogyna][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02450NO10G02450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02450.1NO10G02450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02450.1.cds1NO10G02450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02450.1.cds2NO10G02450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02450.1 ID=NO10G02450.1|Name=NO10G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1215bp
ATGGCATCCGCGACACAGTCAGAACATCCACAGTCCGGCGAACATCAACA
AAAGGCCCTCTCGCCAATAGCCGGCCAGCGTGCAGCAGCCCGGCTGACTG
GGCTGGAGGAGGAGAGCAGCAACAGTGTTGATGCGGAGGGCGATTCGGCA
TCGTTGCCTCCTCACATCTATGCTGTGGCAGACGCGGCGTATCGAGCTAT
GACGGGCTTTTTCGGAGCGACGCAGGGTTTTTCTGATCAGTCGATTTTGG
TGAGTGGAGAAAGTGGGGCGGGAAAGACGGAGAGCAGTAAGTTTATCATG
AGTTACTTGGCGGTGGTTGCCACACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAACAACAGGCTGTGATGGAGGAGGAAGGGGGGATCGCCAGCCAAGTG
TTACAGTCAAACCCTATTTTAGAGAGTTTTGGGAATGCCCGCACAATTCG
TAACGAAAACTCTTCACGCTTCGGTAAGTTCATCGAACTACATTTCGCTG
ATGCTGTTGGTAGTGGTGTTGGCGCGGCAGGGAAAGGGATATTGATGGGT
GCTAAAATTTCAACATACCTGTTGAAAAAAGTACGGATTGTTAGTCAGGC
GGAGGGGGAGAGAAATTATCACATTTTCTACCAGCTGCTGAAGGGTGCTG
ATGCCAAGGAGAGGGTAGCGTTGGGGCTGGGAGAATTTGTGAAGGAAGAG
GGAGGGAAGAAGGAAAGGGAGGAAGTTCAGGAGGTCAAGTTTCATTATTT
GAGTCACAGTGGGTGTATGTCGCGACAGGATGGGACAGACGATGCGGACG
ACTACCAGCGCACGAGGAAGGCCATGACTATCATGGGGTTTGGAACTGAA
GAGCAAGCACGTGTGATGAAGTTAGTGGCGGCCATCTTACACCTGGGCAA
TTTGCGATTTGCGATGCGCAAGCAAGGAGGAAGCAGCGGCAATAGCTGCA
GTGATGCCGATTTCATCCCCGAGGCAGCGACTGTCGCAGCAGCAGCAAGC
GTGGCTACGGCCGAACGCATCGCGGATTTGTTGGAGGTGGACCCACTGGC
GTTCAAGCAGTCTTTGACTGATCGTACAATTCAAGCAGGACGGGAGGCAG
TGAATGTGCGCCTATCGCCGGCGCAAGCGGAGGGAGCACGAGAAGCATTA
GCCAAGGCCATATAG
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protein sequence of NO10G02450.1

>NO10G02450.1-protein ID=NO10G02450.1-protein|Name=NO10G02450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MASATQSEHPQSGEHQQKALSPIAGQRAAARLTGLEEESSNSVDAEGDSA
SLPPHIYAVADAAYRAMTGFFGATQGFSDQSILVSGESGAGKTESSKFIM
SYLAVVATQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVMEEEGGIASQV
LQSNPILESFGNARTIRNENSSRFGKFIELHFADAVGSGVGAAGKGILMG
AKISTYLLKKVRIVSQAEGERNYHIFYQLLKGADAKERVALGLGEFVKEE
GGKKEREEVQEVKFHYLSHSGCMSRQDGTDDADDYQRTRKAMTIMGFGTE
EQARVMKLVAAILHLGNLRFAMRKQGGSSGNSCSDADFIPEAATVAAAAS
VATAERIADLLEVDPLAFKQSLTDRTIQAGREAVNVRLSPAQAEGAREAL
AKAI*
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mRNA from alignment at chr10:665194..666524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02450.1 ID=NO10G02450.1|Name=NO10G02450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp|location=Sequence derived from alignment at chr10:665194..666524+ (Nannochloropsis oceanica)
ATGGCATCCGCGACACAGTCAGAACATCCACAGTCCGGCGAACATCAACA
AAAGGCCCTCTCGCCAATAGCCGGTACTGGCGCGACGCAATATACTCCCA
AATCGGGGAGCGCATTTTGCTCGCTGTAAATCCCTTCAAGCCCCTCTCCA
TCTACGGCCATAAGACTTTCGACCGCTATCGCACGGTAGGCCAGCGTGCA
GCAGCCCGGCTGACTGGGCTGGAGGAGGAGAGCAGCAACAGTGTTGATGC
GGAGGGCGATTCGGCATCGTTGCCTCCTCACATCTATGCTGTGGCAGACG
CGGCGTATCGAGCTATGACGGGCTTTTTCGGAGCGACGCAGGGTTTTTCT
GATCAGTCGATTTTGGTGAGTGGAGAAAGTGGGGCGGGAAAGACGGAGAG
CAGTAAGTTTATCATGAGTTACTTGGCGGTGGTTGCCACACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAGCAACAACAGGCTGTGATGGAGGAGGAAGGGGG
GATCGCCAGCCAAGTGTTACAGTCAAACCCTATTTTAGAGAGTTTTGGGA
ATGCCCGCACAATTCGTAACGAAAACTCTTCACGCTTCGGTAAGTTCATC
GAACTACATTTCGCTGATGCTGTTGGTAGTGGTGTTGGCGCGGCAGGGAA
AGGGATATTGATGGGTGCTAAAATTTCAACATACCTGTTGAAAAAAGTAC
GGATTGTTAGTCAGGCGGAGGGGGAGAGAAATTATCACATTTTCTACCAG
CTGCTGAAGGGTGCTGATGCCAAGGAGAGGGTAGCGTTGGGGCTGGGAGA
ATTTGTGAAGGAAGAGGGAGGGAAGAAGGAAAGGGAGGAAGTTCAGGAGG
TCAAGTTTCATTATTTGAGTCACAGTGGGTGTATGTCGCGACAGGATGGG
ACAGACGATGCGGACGACTACCAGCGCACGAGGAAGGCCATGACTATCAT
GGGGTTTGGAACTGAAGAGCAAGCACGTGTGATGAAGTTAGTGGCGGCCA
TCTTACACCTGGGCAATTTGCGATTTGCGATGCGCAAGCAAGGAGGAAGC
AGCGGCAATAGCTGCAGTGATGCCGATTTCATCCCCGAGGCAGCGACTGT
CGCAGCAGCAGCAAGCGTGGCTACGGCCGAACGCATCGCGGATTTGTTGG
AGGTGGACCCACTGGCGTTCAAGCAGTCTTTGACTGATCGTACAATTCAA
GCAGGACGGGAGGCAGTGAATGTGCGCCTATCGCCGGCGCAAGCGGAGGG
AGCACGAGAAGCATTAGCCAAGGCCATATAG
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Coding sequence (CDS) from alignment at chr10:665194..666524+

>NO10G02450.1 ID=NO10G02450.1|Name=NO10G02450.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr10:665194..666524+ (Nannochloropsis oceanica)
ATGGCATCCGCGACACAGTCAGAACATCCACAGTCCGGCGAACATCAACA
AAAGGCCCTCTCGCCAATAGCCGGCCAGCGTGCAGCAGCCCGGCTGACTG
GGCTGGAGGAGGAGAGCAGCAACAGTGTTGATGCGGAGGGCGATTCGGCA
TCGTTGCCTCCTCACATCTATGCTGTGGCAGACGCGGCGTATCGAGCTAT
GACGGGCTTTTTCGGAGCGACGCAGGGTTTTTCTGATCAGTCGATTTTGG
TGAGTGGAGAAAGTGGGGCGGGAAAGACGGAGAGCAGTAAGTTTATCATG
AGTTACTTGGCGGTGGTTGCCACACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC
AGCAACAACAGGCTGTGATGGAGGAGGAAGGGGGGATCGCCAGCCAAGTG
TTACAGTCAAACCCTATTTTAGAGAGTTTTGGGAATGCCCGCACAATTCG
TAACGAAAACTCTTCACGCTTCGGTAAGTTCATCGAACTACATTTCGCTG
ATGCTGTTGGTAGTGGTGTTGGCGCGGCAGGGAAAGGGATATTGATGGGT
GCTAAAATTTCAACATACCTGTTGAAAAAAGTACGGATTGTTAGTCAGGC
GGAGGGGGAGAGAAATTATCACATTTTCTACCAGCTGCTGAAGGGTGCTG
ATGCCAAGGAGAGGGTAGCGTTGGGGCTGGGAGAATTTGTGAAGGAAGAG
GGAGGGAAGAAGGAAAGGGAGGAAGTTCAGGAGGTCAAGTTTCATTATTT
GAGTCACAGTGGGTGTATGTCGCGACAGGATGGGACAGACGATGCGGACG
ACTACCAGCGCACGAGGAAGGCCATGACTATCATGGGGTTTGGAACTGAA
GAGCAAGCACGTGTGATGAAGTTAGTGGCGGCCATCTTACACCTGGGCAA
TTTGCGATTTGCGATGCGCAAGCAAGGAGGAAGCAGCGGCAATAGCTGCA
GTGATGCCGATTTCATCCCCGAGGCAGCGACTGTCGCAGCAGCAGCAAGC
GTGGCTACGGCCGAACGCATCGCGGATTTGTTGGAGGTGGACCCACTGGC
GTTCAAGCAGTCTTTGACTGATCGTACAATTCAAGCAGGACGGGAGGCAG
TGAATGTGCGCCTATCGCCGGCGCAAGCGGAGGGAGCACGAGAAGCATTA
GCCAAGGCCATATAG
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Synonyms
Publications