NO10G02400.1, NO10G02400.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G02400.1
Unique Name	NO10G02400.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1877
Alignment location	chr10:654320..656944 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:654320..656944 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO10G02400.1 vs.
Match: EWM25409.1 (cathepsin a [Nannochloropsis gaditana])

HSP 1 Score: 786.2 bits (2029), Expect = 6.600e-224
Identity = 379/532 (71.24%), Postives = 424/532 (79.70%), Query Frame = 0

Query:   11 LLVLLACTVAAKA----EYTQAALEDEILDLPGLNYAPKFRHFSGYVVIPGIRPNATKHVHYHFIESEQDPTKDPVVWWTNGGPGCSGLLALFTEMGPFKPNLEGVLLENAYRWNQVANMLFVEQPVGVGFSYSTDPTTDYELGDHQAAKDNYAFILAFFEKFPQYLPNDFVISSESWGGHYIPTLAVRIVREQSKPDVSPKLNFVGFLVGNPFTSWVNNRQATVKALVGHSLVSYPTAAAWEEQCADFVVAPQYLFGNCLEIEAKMNMEMADLNPYALSYPVCLDESPIASLVKHGRAQRTWLLHHTTPPEAKAKMKNELGEGVGIIDIDGYEPCEDNYLVSYLNQPAVKEALHVDSSIVWTECSSIIKYDLFAFFVPMEPLYKYLINGKYNLKMLVYSGDDDSVCGTWGTQKWMYGLGQKAVTNWVPWRDDAGQVAGFVTQFRGNLTMATVAGAGHEVPSYTPATALKLFRLYLDNSWFDPAAFRPWSDG-GEKEVGSEQREQDEQQQGQDVQQQEEREQQQELIKASLR 538
            LL + A T    A     Y QAAL+DEI DLPGL Y P FRHFSGY+ IPGI PNATKHVHYHFIESE  P KDPVVWWTNGGPGCSGLL LFTE GPFKPN EG+L +NAYRWN+VANMLFVEQPVGVGFS+S DP  DYELGD QAAKDNY FIL FF KFPQYL N+FVISSESWGGHYIPTL+V IVR+Q +P  SPKLNFVGFLVGNP+TSW+NN QATVKALVGHSLVSYPTAAAWE QCA   +AP+YL  +C+E+EA+MN+EMA++NPYALSYPVCLD  P A L K GRAQRTWLLHH +PPE + +M      GVGIIDI  YEPCEDNYLV YLNQ AVK A+HVD  I W ECSS++ YDL  FF PMEPLYK L+ GKY LKMLVYSGDDDSVCGTWGTQKWM+GLGQ+ +  WVPWRDD GQVAGFVTQF GNLT+ATVAGAGHEVP+YTP TALKLF L+LD +WFDP AF P  +G G K +G +   + E+++G    +  ERE  Q  +K  LR
Sbjct:    8 LLTVFALTSGVNAGRNVNYLQAALDDEITDLPGLEYMPAFRHFSGYIDIPGIAPNATKHVHYHFIESESAPEKDPVVWWTNGGPGCSGLLGLFTEQGPFKPNAEGILEQNAYRWNKVANMLFVEQPVGVGFSFSDDPMHDYELGDRQAAKDNYEFILGFFHKFPQYLSNEFVISSESWGGHYIPTLSVEIVRQQGRPGASPKLNFVGFLVGNPYTSWMNNHQATVKALVGHSLVSYPTAAAWERQCAHIRIAPEYLLTDCIELEARMNVEMAEVNPYALSYPVCLDTVPNARLSKRGRAQRTWLLHHASPPEVRERMAQ---VGVGIIDIADYEPCEDNYLVKYLNQEAVKVAMHVDPGIEWKECSSLLNYDLRDFFAPMEPLYKLLLGGKYGLKMLVYSGDDDSVCGTWGTQKWMHGLGQRVLRAWVPWRDDEGQVAGFVTQFGGNLTLATVAGAGHEVPTYTPDTALKLFMLFLDGTWFDPKAFSPSEEGDGGKGMGLKGAGEKEKEEGM-AAKGNEREVSQVAVKTLLR 535

The following BLAST results are available for this feature:

BLAST of NO10G02400.1 vs.

BLAST of NO10G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25409.1	6.600e-224	71.24	cathepsin a [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G02400	NO10G02400	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G02400.1	NO10G02400.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G02400.1.cds1	NO10G02400.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G02400.1.cds2	NO10G02400.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G02400.1.cds3	NO10G02400.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G02400.1.cds4	NO10G02400.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G02400.1.cds5	NO10G02400.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:654320..656944-
coding sequence from alignment at chr10:654320..656944-

mRNA sequence

>NO10G02400.1 ID=NO10G02400.1|Name=NO10G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1877bp
ACAGGCACATTCCAATCTCTTTCTACAACCCTGTTTCAAAAATCCCGCAC
GATGCCCACCTTAGTCATCGCCTCCCGCCTGCTTTTGGTGCTGCTGGCAT
GTACAGTCGCCGCCAAGGCTGAGTACACACAGGCAGCGCTCGAAGACGAG
ATATTGGATCTACCAGGATTGAACTATGCTCCTAAATTTCGCCATTTTTC
AGGCTACGTCGTCATTCCGGGCATTCGCCCAAACGCCACCAAGCACGTCC
ATTACCATTTTATTGAGTCCGAGCAAGACCCGACCAAGGATCCAGTTGTG
TGGTGGACAAATGGTGGACCGGGTTGCAGTGGTTTGCTGGCATTGTTTAC
TGAAATGGGGCCTTTCAAGCCTAATTTGGAGGGCGTGCTTTTGGAGAATG
CGTACCGGTGGAACCAAGTGGCCAACATGTTGTTTGTCGAGCAGCCGGTC
GGTGTAGGCTTTTCTTACAGCACCGATCCCACCACCGACTACGAGCTCGG
CGACCACCAGGCAGCCAAGGATAATTACGCATTTATCCTGGCATTTTTCG
AGAAGTTTCCCCAATATCTACCGAATGACTTTGTCATCTCTTCTGAGTCG
TGGGGTGGACACTACATACCCACCCTAGCTGTGCGTATTGTCCGTGAGCA
ATCCAAGCCCGACGTTTCCCCCAAGCTCAATTTCGTGGGGTTTCTGGTCG
GAAATCCTTTCACCAGCTGGGTGAACAATCGCCAGGCGACTGTCAAGGCG
TTGGTCGGTCATTCTTTGGTGTCGTACCCGACGGCTGCTGCTTGGGAAGA
GCAGTGTGCCGACTTCGTGGTGGCCCCGCAATATTTGTTTGGAAATTGCC
TTGAGATCGAGGCGAAAATGAATATGGAAATGGCGGATTTGAATCCTTAC
GCACTCTCCTACCCTGTCTGTCTTGACGAAAGCCCCATAGCCAGCCTCGT
CAAGCATGGGCGGGCTCAACGTACCTGGTTGCTGCATCATACCACACCCC
CTGAGGCCAAGGCAAAAATGAAGAATGAGCTGGGCGAGGGAGTAGGTATC
ATCGATATTGATGGGTATGAGCCCTGTGAAGATAACTATTTGGTGTCGTA
TTTGAACCAACCGGCGGTGAAGGAGGCTTTGCATGTGGATTCGTCCATTG
TGTGGACAGAGTGCTCGAGCATTATTAAATATGACTTGTTCGCCTTCTTT
GTACCGATGGAGCCCCTCTACAAGTACTTGATCAACGGGAAATATAACCT
GAAAATGCTGGTGTATTCGGGTGATGATGACTCGGTTTGTGGCACATGGG
GAACACAAAAGTGGATGTACGGTCTGGGGCAAAAGGCAGTGACAAATTGG
GTGCCGTGGCGTGATGATGCAGGGCAGGTCGCCGGGTTTGTGACACAATT
TAGGGGGAATCTAACTATGGCGACGGTCGCGGGAGCGGGGCATGAGGTCC
CCTCCTATACACCAGCCACGGCTCTGAAGCTCTTCAGACTGTACTTGGAT
AACTCTTGGTTCGATCCTGCGGCATTCCGGCCTTGGTCAGACGGAGGCGA
GAAGGAGGTTGGATCGGAGCAGCGGGAGCAGGATGAGCAGCAGCAGGGGC
AGGACGTTCAGCAGCAGGAGGAGAGGGAGCAGCAGCAGGAGCTGATCAAG
GCATCTTTGCGTCGCCATGCGTGAGTGTAAAATGTAGATGACTTGTAACT
GATTGAGAGAAGGCCCAAAAAACATTTTTGAAAAAAAAGGAGAGAAGAGT
GGTGGAGATTGCTTGATTAACAGCATGCCGACAGAACATAAGTAGAGTTT
TTAACATTCCATCTGGGAGGAAAAGGTTGAAGGAAAAAGAAGCAAAAAAT
GCTCGTGCGAGCGCCAGTTGAAGGCAG

protein sequence of NO10G02400.1

>NO10G02400.1-protein ID=NO10G02400.1-protein|Name=NO10G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MPTLVIASRLLLVLLACTVAAKAEYTQAALEDEILDLPGLNYAPKFRHFS
GYVVIPGIRPNATKHVHYHFIESEQDPTKDPVVWWTNGGPGCSGLLALFT
EMGPFKPNLEGVLLENAYRWNQVANMLFVEQPVGVGFSYSTDPTTDYELG
DHQAAKDNYAFILAFFEKFPQYLPNDFVISSESWGGHYIPTLAVRIVREQ
SKPDVSPKLNFVGFLVGNPFTSWVNNRQATVKALVGHSLVSYPTAAAWEE
QCADFVVAPQYLFGNCLEIEAKMNMEMADLNPYALSYPVCLDESPIASLV
KHGRAQRTWLLHHTTPPEAKAKMKNELGEGVGIIDIDGYEPCEDNYLVSY
LNQPAVKEALHVDSSIVWTECSSIIKYDLFAFFVPMEPLYKYLINGKYNL
KMLVYSGDDDSVCGTWGTQKWMYGLGQKAVTNWVPWRDDAGQVAGFVTQF
RGNLTMATVAGAGHEVPSYTPATALKLFRLYLDNSWFDPAAFRPWSDGGE
KEVGSEQREQDEQQQGQDVQQQEEREQQQELIKASLRRHA*

mRNA from alignment at chr10:654320..656944-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G02400.1 ID=NO10G02400.1|Name=NO10G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2625bp|location=Sequence derived from alignment at chr10:654320..656944- (Nannochloropsis oceanica)
ACAGGCACATTCCAATCTCTTTCTACAACCCTGTTTCAAAAATCCCGCAC
GATGCCCACCTTAGTCATCGCCTCCCGCCTGCTTTTGGTGCTGCTGGCAT
GTACAGTCGCCGCCAAGGCTGAGTACACACAGGCAGCGCTCGAAGACGAG
ATATTGGATCTACCAGGATTGAACTATGCTCCTAAATTTCGCCATTTTTC
AGGCTACGTCGTCATTCCGGGCATTCGCCCAAACGCCACCAAGCACGTCC
ATTACCATTTTATTGAGTCCGAGCAAGACCCGACCAAGGATCCAGTTGTG
TGGTGGACAAATGGTGGACCGGGTTGCAGTGGTTTGCTGGCATTGTTTAC
TGAAATGGGGCCTTTCAAGCCTAATTTGGAGGGCGTGCTTTTGGAGAATG
CGTACCGGTGGAACCAAGTGGCCAACATGTTGTTTGTCGAGCAGCCGGGT
ACGTAGCGATAAGAAAGGAGGATGAAGATTGATGCCGCCCATCATGACTT
TCCTTGGGGCACTCTTTGTCACATTTCTGTGTCGTTCTTACTCCCTCCCT
TGTTTTCTTTACGCAGTCGGTGTAGGCTTTTCTTACAGCACCGATCCCAC
CACCGACTACGAGCTCGGCGACCACCAGGCAGCCAAGGATAATTACGCAT
TTATCCTGGCATTTTTCGAGAAGTTTCCCCAATATCTACCGAATGACTTT
GTCATCTCTTCTGAGGTAGTTTAAATGTTGAGTTGTGAGCATAAAGGAGG
AAGACGATTTTCCATCCATCTGTCTCTACCACCGATTCTTTTGACTATGG
ACATATTGTGCGTTGCCGACATTTGACCACCGAAACATCCCTCCCCTTCC
CATTATTTACGTATGTACGCCTATTCCCAAAAAAGTCGTGGGGTGGACAC
TACATACCCACCCTAGCTGTGCGTATTGTCCGTGAGCAATCCAAGCCCGA
CGTTTCCCCCAAGCTCAATTTCGTGGGGTTTCTGGTCGGAAATCCTTTCA
CCAGCTGGGTGAACAATCGCCAGGCGACTGTCAAGGCGTTGGTCGGTCAT
TCTTTGGTGTCGTACCCGACGGCTGCTGCTTGGGAAGAGCAGTGTGCCGA
CTTCGTGGTGGCCCCGCAATATTTGTTTGGAAATTGCCTTGAGATCGAGG
CGAAAATGAATATGGAAATGGCGGATTTGAATCCTTACGTACGTACGCTG
GAGAACGGGAGGGAGGAGGAAGGAAAGGGGGAAGGAAAGGGGGAAGGAAA
GGGAAGTGGAGCATTTAGATATTCTACACAGACACAGACACAGACAAACA
CAACACACACACACACACACAGACACACAGACACAGACACAGACACACAC
AGACACACACAGACACACACAGACACTCACAGACACACACAGACACACAC
ACACACACAGACACACACAGACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACAAAATAGGCACTCTCCTACCCT
GTCTGTCTTGACGAAAGCCCCATAGCCAGCCTCGTCAAGCATGGGCGGGC
TCAACGTACCTGGTTGCTGCATCATACCACACCCCCTGAGGCCAAGGCAA
AAATGAAGAATGAGCTGGGCGAGGGAGTAGGTATCATCGATATTGATGGG
TATGAGCCCTGTGAAGATAACTATTTGGTGTCGTATTTGAACCAACCGGC
GGTGAAGGAGGCTTTGCATGTGGATTCGTCCATTGTGTGGACAGAGTGCT
CGAGCATTATTAAATATGACTTGTTCGCCTTCTTTGTACCGATGGAGCCC
CTCTACAAGTACTTGATCAACGGGAAATATAACCTGAAAATGCTGGTGTA
TTCGGGTGATGATGACTCGGTTTGTGGCACATGGGGAACACAAAAGTGGA
TGTACGGTCTGGGGCAAAAGGCAGTGACAAATTGGGTGCCGTGGCGTGAT
GATGCAGGGCAGGTCGCCGGGTTTGTGACACAATTTAGGGGGAATCTAAC
TATGGCGACGGTCGCGGGAGCGGGGCATGGTAAGTCTTGCTTTTGAGTGA
GAATTTGTTATTTTTTTGGGTGGAGGGTTGTTACGCTTCGCATTCTGCGC
GCTCTCTAGTGACTTGTTGCCTCGGCCTACCACGCATACACTCTAATATT
TTTCCTCCGCGCACACACACACATATGTGTACACACGTACAGAGGTCCCC
TCCTATACACCAGCCACGGCTCTGAAGCTCTTCAGACTGTACTTGGATAA
CTCTTGGTTCGATCCTGCGGCATTCCGGCCTTGGTCAGACGGAGGCGAGA
AGGAGGTTGGATCGGAGCAGCGGGAGCAGGATGAGCAGCAGCAGGGGCAG
GACGTTCAGCAGCAGGAGGAGAGGGAGCAGCAGCAGGAGCTGATCAAGGC
ATCTTTGCGTCGCCATGCGTGAGTGTAAAATGTAGATGACTTGTAACTGA
TTGAGAGAAGGCCCAAAAAACATTTTTGAAAAAAAAGGAGAGAAGAGTGG
TGGAGATTGCTTGATTAACAGCATGCCGACAGAACATAAGTAGAGTTTTT
AACATTCCATCTGGGAGGAAAAGGTTGAAGGAAAAAGAAGCAAAAAATGC
TCGTGCGAGCGCCAGTTGAAGGCAG

Coding sequence (CDS) from alignment at chr10:654320..656944-

>NO10G02400.1 ID=NO10G02400.1|Name=NO10G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr10:654320..656944- (Nannochloropsis oceanica)
ATGCCCACCTTAGTCATCGCCTCCCGCCTGCTTTTGGTGCTGCTGGCATG
TACAGTCGCCGCCAAGGCTGAGTACACACAGGCAGCGCTCGAAGACGAGA
TATTGGATCTACCAGGATTGAACTATGCTCCTAAATTTCGCCATTTTTCA
GGCTACGTCGTCATTCCGGGCATTCGCCCAAACGCCACCAAGCACGTCCA
TTACCATTTTATTGAGTCCGAGCAAGACCCGACCAAGGATCCAGTTGTGT
GGTGGACAAATGGTGGACCGGGTTGCAGTGGTTTGCTGGCATTGTTTACT
GAAATGGGGCCTTTCAAGCCTAATTTGGAGGGCGTGCTTTTGGAGAATGC
GTACCGGTGGAACCAAGTGGCCAACATGTTGTTTGTCGAGCAGCCGGTCG
GTGTAGGCTTTTCTTACAGCACCGATCCCACCACCGACTACGAGCTCGGC
GACCACCAGGCAGCCAAGGATAATTACGCATTTATCCTGGCATTTTTCGA
GAAGTTTCCCCAATATCTACCGAATGACTTTGTCATCTCTTCTGAGTCGT
GGGGTGGACACTACATACCCACCCTAGCTGTGCGTATTGTCCGTGAGCAA
TCCAAGCCCGACGTTTCCCCCAAGCTCAATTTCGTGGGGTTTCTGGTCGG
AAATCCTTTCACCAGCTGGGTGAACAATCGCCAGGCGACTGTCAAGGCGT
TGGTCGGTCATTCTTTGGTGTCGTACCCGACGGCTGCTGCTTGGGAAGAG
CAGTGTGCCGACTTCGTGGTGGCCCCGCAATATTTGTTTGGAAATTGCCT
TGAGATCGAGGCGAAAATGAATATGGAAATGGCGGATTTGAATCCTTACG
CACTCTCCTACCCTGTCTGTCTTGACGAAAGCCCCATAGCCAGCCTCGTC
AAGCATGGGCGGGCTCAACGTACCTGGTTGCTGCATCATACCACACCCCC
TGAGGCCAAGGCAAAAATGAAGAATGAGCTGGGCGAGGGAGTAGGTATCA
TCGATATTGATGGGTATGAGCCCTGTGAAGATAACTATTTGGTGTCGTAT
TTGAACCAACCGGCGGTGAAGGAGGCTTTGCATGTGGATTCGTCCATTGT
GTGGACAGAGTGCTCGAGCATTATTAAATATGACTTGTTCGCCTTCTTTG
TACCGATGGAGCCCCTCTACAAGTACTTGATCAACGGGAAATATAACCTG
AAAATGCTGGTGTATTCGGGTGATGATGACTCGGTTTGTGGCACATGGGG
AACACAAAAGTGGATGTACGGTCTGGGGCAAAAGGCAGTGACAAATTGGG
TGCCGTGGCGTGATGATGCAGGGCAGGTCGCCGGGTTTGTGACACAATTT
AGGGGGAATCTAACTATGGCGACGGTCGCGGGAGCGGGGCATGAGGTCCC
CTCCTATACACCAGCCACGGCTCTGAAGCTCTTCAGACTGTACTTGGATA
ACTCTTGGTTCGATCCTGCGGCATTCCGGCCTTGGTCAGACGGAGGCGAG
AAGGAGGTTGGATCGGAGCAGCGGGAGCAGGATGAGCAGCAGCAGGGGCA
GGACGTTCAGCAGCAGGAGGAGAGGGAGCAGCAGCAGGAGCTGATCAAGG
CATCTTTGCGTCGCCATGCGTGA

Synonyms

Publications