NO10G02390.1, NO10G02390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02390.1
Unique NameNO10G02390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr10:652567..654228 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:652567..654228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02390.1 vs.
Match: EWM25445.1 (rna family [Nannochloropsis gaditana])

HSP 1 Score: 706.8 bits (1823), Expect = 5.200e-200
Identity = 367/534 (68.73%), Postives = 416/534 (77.90%), Query Frame = 0 
Query:   27 SPSQSITITSTVS----AASYTRPSLPMRRTNGGRIKSTVVPLTQRDEED---ADNAAPAQPKQKKQQARKQKPWQGPFLYHEELELTVDSLTNLGLGICRTSLPLQSSPTFTSDSNSSSSPIPPPPPVERERSAAPVAPESWVIMVPGVIPGERIRLRIYRNHKNYSEADLVEVIEASPARVEPVCSLFGRCGGCQYQHMSITAQRDWKQQHVVDVLARTGNITNVAVQKVIGTDDVLGYRSKITPHHEKPRGGEIKDIGFLKLGSRALVDVEQCAIATPAINARLMGLREEVRARARAAAAEETPKKPKGATLFLRETQEGVVTDPRVEVSDKIRGLTFKYTAGSFFQNNPFMLPEMVGYVTGKAREGGMRFLVDAYCGGGLFCLSASKDFEACYGVEISELAILSARRNADLNEITNCHFRAGDASDIFAGIKHIRGQETVMIIDPPRKGCDEDFLTQLCAFRPARIVYVSCDPATQARDAQVLVRSGYEIEELQPFDLFPQTRHIENVIVFADARLSGPGHGPAAPAAAE 554
            SPS   +  S VS    A S     LP R + G R  ST+  LT+ +E     +          K+++ RK KPWQGPF YHEELELTV+SLTNLG GICR SLP  S P    D+ S   P+P P      R +    PE WV+MVPGVIPGERIRLRIYRNHKNYSEADL+ V+E+SP RVEP C LFG CGGCQYQHMS+ AQR WK++HV+ VLARTGN+T VAVQ+ IGT+  LGYRSKITPHHEKPRGGEI++IGFLKLGSRALVDV +CAIATPAINARL GLREEVR  ARAAA  ETP+KPKGATL LRET+EGVVTDPR EVSD++ GL FKYTAGSFFQNNP++LP MV YV  KA    +R+LVDAYCGGGLFCLSASK+FEACYGVEISELAILSA+RNA+LN+I NCHF+AGDA+DIFAGI HI G +TV I+DPPRKGCDE FLTQLC FRPARIVYVSCDPATQARDA+ L+  GY+IEE+QPFDLFPQTRHIENVIVF +A  +G G GP  P A E
Sbjct:   38 SPSAGFSCQSPVSTFVRAGSCIGSYLPARYSLG-RGGSTIRYLTEDEEGGMILSKGTRSVVTGSKQRRGRKSKPWQGPFAYHEELELTVESLTNLGWGICRASLP--SVP----DAQSPEMPLPTPSTPGGPRES----PEGWVVMVPGVIPGERIRLRIYRNHKNYSEADLMHVLESSPERVEPACPLFGTCGGCQYQHMSVAAQRAWKREHVLQVLARTGNVTGVAVQETIGTEHTLGYRSKITPHHEKPRGGEIREIGFLKLGSRALVDVPECAIATPAINARLRGLREEVRVTARAAAVAETPRKPKGATLLLRETREGVVTDPRAEVSDQVGGLLFKYTAGSFFQNNPYVLPHMVEYVVRKAGAPNVRYLVDAYCGGGLFCLSASKNFEACYGVEISELAILSAQRNAELNKIGNCHFQAGDATDIFAGIGHISGADTVTILDPPRKGCDEGFLTQLCRFRPARIVYVSCDPATQARDARFLLERGYDIEEVQPFDLFPQTRHIENVIVFVEAHRTGAGAGPVPPWAGE 560
The following BLAST results are available for this feature:
BLAST of NO10G02390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25445.15.200e-20068.73rna family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02390NO10G02390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02390.1NO10G02390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02390.1.cds1NO10G02390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02390.1 ID=NO10G02390.1|Name=NO10G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp
ATGCTGCTCTCCATTTTACGCGGAATCGCGGCGCGTCGCAACCCAGTCAG
TCGAGCAGCCTTTGTCTTCTTGCACCCTAGTCCCTCCCAATCGATTACGA
TTACCTCCACCGTTAGTGCTGCCTCCTACACTCGTCCCTCCTTGCCCATG
CGACGCACCAACGGGGGTCGCATCAAATCGACCGTCGTACCTTTGACGCA
AAGGGACGAAGAGGACGCGGATAACGCCGCTCCCGCCCAGCCGAAGCAAA
AGAAGCAACAGGCCCGCAAGCAAAAACCATGGCAAGGTCCTTTCCTATAC
CATGAGGAGCTCGAGCTCACTGTCGATAGTCTTACCAATCTGGGCCTCGG
CATTTGCCGCACATCCTTGCCATTACAATCATCCCCAACGTTCACAAGTG
ACTCGAATTCCTCTTCGTCACCTATACCACCACCACCGCCTGTAGAAAGA
GAGAGATCAGCAGCACCAGTGGCGCCGGAAAGCTGGGTGATAATGGTCCC
CGGTGTCATTCCCGGCGAGCGGATCCGCCTCCGCATCTACCGCAACCACA
AAAACTACTCAGAAGCTGATCTAGTCGAAGTCATAGAAGCTTCTCCAGCC
CGTGTTGAGCCCGTTTGTTCTTTGTTTGGGAGGTGTGGGGGTTGTCAATA
CCAACATATGAGTATAACTGCCCAGAGAGATTGGAAACAACAGCATGTCG
TTGACGTGCTTGCCCGGACAGGAAACATCACGAATGTGGCCGTGCAGAAA
GTAATTGGGACAGATGACGTGTTGGGGTACCGCAGTAAGATTACCCCCCA
CCACGAAAAACCTCGTGGGGGAGAAATCAAAGATATTGGCTTCCTTAAGC
TCGGTTCTCGAGCCTTAGTCGACGTCGAGCAATGCGCCATCGCCACTCCA
GCAATCAATGCCCGATTGATGGGACTTCGAGAAGAGGTCCGTGCACGAGC
CCGCGCTGCGGCAGCGGAGGAGACTCCCAAGAAACCGAAGGGGGCAACAT
TGTTCTTGAGAGAAACGCAGGAGGGGGTGGTGACTGACCCGAGGGTAGAA
GTGTCGGATAAAATCAGGGGGTTGACGTTTAAATACACGGCGGGCAGTTT
CTTTCAAAATAATCCGTTTATGTTGCCGGAGATGGTTGGATACGTGACAG
GAAAGGCGAGGGAAGGAGGAATGAGGTTTTTGGTGGACGCTTACTGTGGG
GGGGGGTTGTTTTGTCTCTCAGCAAGTAAGGATTTCGAGGCGTGTTATGG
GGTGGAGATAAGTGAGTTGGCTATACTAAGTGCAAGGAGGAACGCCGACT
TAAACGAGATTACGAATTGTCACTTTCGCGCGGGGGATGCGAGTGATATA
TTCGCGGGGATAAAGCATATACGAGGTCAGGAAACGGTAATGATCATAGA
CCCCCCCCGCAAAGGGTGTGATGAAGACTTTTTGACGCAGCTTTGTGCGT
TTCGACCGGCAAGGATTGTGTACGTAAGTTGTGACCCAGCCACGCAAGCG
AGAGACGCGCAGGTGCTTGTAAGGAGTGGATATGAAATCGAGGAGCTCCA
GCCTTTTGATTTGTTCCCTCAGACGAGGCATATTGAGAATGTGATTGTAT
TCGCTGACGCTCGGTTAAGTGGGCCGGGACACGGCCCTGCAGCGCCAGCA
GCGGCAGAATGA
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protein sequence of NO10G02390.1

>NO10G02390.1-protein ID=NO10G02390.1-protein|Name=NO10G02390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=554bp
MLLSILRGIAARRNPVSRAAFVFLHPSPSQSITITSTVSAASYTRPSLPM
RRTNGGRIKSTVVPLTQRDEEDADNAAPAQPKQKKQQARKQKPWQGPFLY
HEELELTVDSLTNLGLGICRTSLPLQSSPTFTSDSNSSSSPIPPPPPVER
ERSAAPVAPESWVIMVPGVIPGERIRLRIYRNHKNYSEADLVEVIEASPA
RVEPVCSLFGRCGGCQYQHMSITAQRDWKQQHVVDVLARTGNITNVAVQK
VIGTDDVLGYRSKITPHHEKPRGGEIKDIGFLKLGSRALVDVEQCAIATP
AINARLMGLREEVRARARAAAAEETPKKPKGATLFLRETQEGVVTDPRVE
VSDKIRGLTFKYTAGSFFQNNPFMLPEMVGYVTGKAREGGMRFLVDAYCG
GGLFCLSASKDFEACYGVEISELAILSARRNADLNEITNCHFRAGDASDI
FAGIKHIRGQETVMIIDPPRKGCDEDFLTQLCAFRPARIVYVSCDPATQA
RDAQVLVRSGYEIEELQPFDLFPQTRHIENVIVFADARLSGPGHGPAAPA
AAE*
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mRNA from alignment at chr10:652567..654228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02390.1 ID=NO10G02390.1|Name=NO10G02390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp|location=Sequence derived from alignment at chr10:652567..654228+ (Nannochloropsis oceanica)
ATGCTGCTCTCCATTTTACGCGGAATCGCGGCGCGTCGCAACCCAGTCAG
TCGAGCAGCCTTTGTCTTCTTGCACCCTAGTCCCTCCCAATCGATTACGA
TTACCTCCACCGTTAGTGCTGCCTCCTACACTCGTCCCTCCTTGCCCATG
CGACGCACCAACGGGGGTCGCATCAAATCGACCGTCGTACCTTTGACGCA
AAGGGACGAAGAGGACGCGGATAACGCCGCTCCCGCCCAGCCGAAGCAAA
AGAAGCAACAGGCCCGCAAGCAAAAACCATGGCAAGGTCCTTTCCTATAC
CATGAGGAGCTCGAGCTCACTGTCGATAGTCTTACCAATCTGGGCCTCGG
CATTTGCCGCACATCCTTGCCATTACAATCATCCCCAACGTTCACAAGTG
ACTCGAATTCCTCTTCGTCACCTATACCACCACCACCGCCTGTAGAAAGA
GAGAGATCAGCAGCACCAGTGGCGCCGGAAAGCTGGGTGATAATGGTCCC
CGGTGTCATTCCCGGCGAGCGGATCCGCCTCCGCATCTACCGCAACCACA
AAAACTACTCAGAAGCTGATCTAGTCGAAGTCATAGAAGCTTCTCCAGCC
CGTGTTGAGCCCGTTTGTTCTTTGTTTGGGAGGTGTGGGGGTTGTCAATA
CCAACATATGAGTATAACTGCCCAGAGAGATTGGAAACAACAGCATGTCG
TTGACGTGCTTGCCCGGACAGGAAACATCACGAATGTGGCCGTGCAGAAA
GTAATTGGGACAGATGACGTGTTGGGGTACCGCAGTAAGATTACCCCCCA
CCACGAAAAACCTCGTGGGGGAGAAATCAAAGATATTGGCTTCCTTAAGC
TCGGTTCTCGAGCCTTAGTCGACGTCGAGCAATGCGCCATCGCCACTCCA
GCAATCAATGCCCGATTGATGGGACTTCGAGAAGAGGTCCGTGCACGAGC
CCGCGCTGCGGCAGCGGAGGAGACTCCCAAGAAACCGAAGGGGGCAACAT
TGTTCTTGAGAGAAACGCAGGAGGGGGTGGTGACTGACCCGAGGGTAGAA
GTGTCGGATAAAATCAGGGGGTTGACGTTTAAATACACGGCGGGCAGTTT
CTTTCAAAATAATCCGTTTATGTTGCCGGAGATGGTTGGATACGTGACAG
GAAAGGCGAGGGAAGGAGGAATGAGGTTTTTGGTGGACGCTTACTGTGGG
GGGGGGTTGTTTTGTCTCTCAGCAAGTAAGGATTTCGAGGCGTGTTATGG
GGTGGAGATAAGTGAGTTGGCTATACTAAGTGCAAGGAGGAACGCCGACT
TAAACGAGATTACGAATTGTCACTTTCGCGCGGGGGATGCGAGTGATATA
TTCGCGGGGATAAAGCATATACGAGGTCAGGAAACGGTAATGATCATAGA
CCCCCCCCGCAAAGGGTGTGATGAAGACTTTTTGACGCAGCTTTGTGCGT
TTCGACCGGCAAGGATTGTGTACGTAAGTTGTGACCCAGCCACGCAAGCG
AGAGACGCGCAGGTGCTTGTAAGGAGTGGATATGAAATCGAGGAGCTCCA
GCCTTTTGATTTGTTCCCTCAGACGAGGCATATTGAGAATGTGATTGTAT
TCGCTGACGCTCGGTTAAGTGGGCCGGGACACGGCCCTGCAGCGCCAGCA
GCGGCAGAATGA
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Coding sequence (CDS) from alignment at chr10:652567..654228+

>NO10G02390.1 ID=NO10G02390.1|Name=NO10G02390.1|organism=Nannochloropsis oceanica|type=CDS|length=1662bp|location=Sequence derived from alignment at chr10:652567..654228+ (Nannochloropsis oceanica)
ATGCTGCTCTCCATTTTACGCGGAATCGCGGCGCGTCGCAACCCAGTCAG
TCGAGCAGCCTTTGTCTTCTTGCACCCTAGTCCCTCCCAATCGATTACGA
TTACCTCCACCGTTAGTGCTGCCTCCTACACTCGTCCCTCCTTGCCCATG
CGACGCACCAACGGGGGTCGCATCAAATCGACCGTCGTACCTTTGACGCA
AAGGGACGAAGAGGACGCGGATAACGCCGCTCCCGCCCAGCCGAAGCAAA
AGAAGCAACAGGCCCGCAAGCAAAAACCATGGCAAGGTCCTTTCCTATAC
CATGAGGAGCTCGAGCTCACTGTCGATAGTCTTACCAATCTGGGCCTCGG
CATTTGCCGCACATCCTTGCCATTACAATCATCCCCAACGTTCACAAGTG
ACTCGAATTCCTCTTCGTCACCTATACCACCACCACCGCCTGTAGAAAGA
GAGAGATCAGCAGCACCAGTGGCGCCGGAAAGCTGGGTGATAATGGTCCC
CGGTGTCATTCCCGGCGAGCGGATCCGCCTCCGCATCTACCGCAACCACA
AAAACTACTCAGAAGCTGATCTAGTCGAAGTCATAGAAGCTTCTCCAGCC
CGTGTTGAGCCCGTTTGTTCTTTGTTTGGGAGGTGTGGGGGTTGTCAATA
CCAACATATGAGTATAACTGCCCAGAGAGATTGGAAACAACAGCATGTCG
TTGACGTGCTTGCCCGGACAGGAAACATCACGAATGTGGCCGTGCAGAAA
GTAATTGGGACAGATGACGTGTTGGGGTACCGCAGTAAGATTACCCCCCA
CCACGAAAAACCTCGTGGGGGAGAAATCAAAGATATTGGCTTCCTTAAGC
TCGGTTCTCGAGCCTTAGTCGACGTCGAGCAATGCGCCATCGCCACTCCA
GCAATCAATGCCCGATTGATGGGACTTCGAGAAGAGGTCCGTGCACGAGC
CCGCGCTGCGGCAGCGGAGGAGACTCCCAAGAAACCGAAGGGGGCAACAT
TGTTCTTGAGAGAAACGCAGGAGGGGGTGGTGACTGACCCGAGGGTAGAA
GTGTCGGATAAAATCAGGGGGTTGACGTTTAAATACACGGCGGGCAGTTT
CTTTCAAAATAATCCGTTTATGTTGCCGGAGATGGTTGGATACGTGACAG
GAAAGGCGAGGGAAGGAGGAATGAGGTTTTTGGTGGACGCTTACTGTGGG
GGGGGGTTGTTTTGTCTCTCAGCAAGTAAGGATTTCGAGGCGTGTTATGG
GGTGGAGATAAGTGAGTTGGCTATACTAAGTGCAAGGAGGAACGCCGACT
TAAACGAGATTACGAATTGTCACTTTCGCGCGGGGGATGCGAGTGATATA
TTCGCGGGGATAAAGCATATACGAGGTCAGGAAACGGTAATGATCATAGA
CCCCCCCCGCAAAGGGTGTGATGAAGACTTTTTGACGCAGCTTTGTGCGT
TTCGACCGGCAAGGATTGTGTACGTAAGTTGTGACCCAGCCACGCAAGCG
AGAGACGCGCAGGTGCTTGTAAGGAGTGGATATGAAATCGAGGAGCTCCA
GCCTTTTGATTTGTTCCCTCAGACGAGGCATATTGAGAATGTGATTGTAT
TCGCTGACGCTCGGTTAAGTGGGCCGGGACACGGCCCTGCAGCGCCAGCA
GCGGCAGAATGA
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Synonyms
Publications