NO10G02370.1, NO10G02370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02370.1
Unique NameNO10G02370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2523
Alignment locationchr10:646887..650035 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:646887..650035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02370.1 vs.
Match: EWM25413.1 (cyclophilin [Nannochloropsis gaditana])

HSP 1 Score: 347.4 bits (890), Expect = 2.800e-92
Identity = 167/194 (86.08%), Postives = 178/194 (91.75%), Query Frame = 0 
Query:    3 SKTFSFLAGMAALAVSAADDATKVTHKVFFDINVGDKPAGRIVFGLYGNTVPKTVENFRALCTGEKGMGKQGHELTYKGSKFHRVIPSFMLQGGDFTHGNGMGGESIYGAKFADENFTLKHSRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSNDGTVKTPVVIADSGELK 197
            +K+ +F+ GMA  A+S ADD TKVTHKVFFDINV DKPAGRIVFGLYGNTVP+TVENFRALCTGEKG+G  G  L YKGSKFHRVIPSFMLQGGDFTH NGMGGESIYG +FADENF LKH+RPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGS+DGTVK PV+IADSGELK
Sbjct:    4 AKSLAFMLGMATFALSQADDLTKVTHKVFFDINVADKPAGRIVFGLYGNTVPRTVENFRALCTGEKGIGGAGRPLHYKGSKFHRVIPSFMLQGGDFTHNNGMGGESIYGGRFADENFKLKHTRPGLLSMANAGRDTNGSQFFITTVVTSWLDGRHVVFGEVLEGMDVVKMIEGLGSDDGTVKKPVIIADSGELK 197
The following BLAST results are available for this feature:
BLAST of NO10G02370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25413.12.800e-9286.08cyclophilin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02370NO10G02370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02370.1NO10G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02370.1.cds1NO10G02370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02370.1.cds2NO10G02370.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02370.1.cds3NO10G02370.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02370.1.cds4NO10G02370.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02370.1.cds5NO10G02370.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02370.1 ID=NO10G02370.1|Name=NO10G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=2523bp
GCCACAATCTCCATCAATGCTCTTGCAGCCTTCTCGTCCCTTGGGGTGAC
TTTTCCCGCCCTTTCATCCAAAGATACAGAATCCAATAAGATGACTCCTA
GGAGGAGTAATGCCACGGGAGTGGTCAGGAGGGAGGAAGAGGAGGAGTAG
GGGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGGCCGAGGTATCG
CTCTGCCACTAACGTGCATGTAGATGCCACTAAAGCACGGCCAACAGTTA
CACTATTGGTACTCAGGCTGCGACTGATACTCAGGTCATTTTCGCTGTCG
ATGCTGCTGCAGCTGTTGTTGTGATCGCGGTTATTGTGCTTGTGGTTGCT
ATCCAAGTCGGGTGGTTCGGACGAAAACGCGATGTCACGCTTGGATTCCG
TGATCCATTCGTAAAGGCCTTGGTCTTCGTGGTGATCGACAATGCCTTCG
ATCAGCTGAGTGGGTAGAGGGAGGGAGGGAGGGACGGGGAGAGGGATGGA
AGATTGGGTGATGGGATAGTGGTGACGAACATAAATAGTTCCACATAAGG
AAAGGACAAGGCAAATTACCTCTCCCAGACCCTGCAGGGGCTCGGTAATC
TTGTTGTGATCCGTGAGTATCACGCCAGCAAGTTTCCCTTCGGCAGCGGC
CTCGGTTAAGTCCACTTCGTCGATGAAGACCATGTCGCTTACAGTAGTCT
CCTTCAGATTCGCCAAACGAAACAGCAGCAATGTCTCAGGCCGAAACTTG
AGCTCGGCGCGTGGCAAGGGCAAGACAGGCACATATTGTACACCTGCTGC
GCTGTCCTCGGAGGAGCGGGTGGCATGCAAGTAGTGGGCAAGGCAGATAG
AGGAGACAATGGTGTCGGCATCGGCCGCTTCGTTCCCTACAACTACCTTG
ATGTGCTTCTTATTGGCTTCGAGCAACGCCGAACGAGCTCCTTTTAGAAA
CGACGGAATCGTCAATGGGGTTAGGGAAGGAGAGGAAGAAGCCATCTGCG
TGGGTGCTGGGTTAAGACGAGTGGCAAATGAGAAGAGGAGGGGGTCGCAC
CGGCGTGGACTGAAGAGGAAGAAAATGCTTCTGGACCTGGAGGTGGGAGA
AAATGCAACCACTGCGCTAGTAACGAGGAGGGAAAGGAAAGTGGCTCTGG
GACCATGACCAGGCATTGACTGCCTGATTTTCCTGTTGCGTGTGTAATGA
TGCGTGGGATGGGGGAGCGGGAGTGGGGCAGGCAAACGAAACTCACGACA
AAGATGCGACCCGGAAGACAGCAAGTCCGCCCCGGCTGGTTGCCCACCCA
CGCCCCTTGCCTGGTACACGCAGTGTTCCTTTCTCCCTCCCGGTCCGCGC
TCCAATTTTTCGCACACGCCCTCTCTTGTGCATTGTACAGCGCAGATGCG
ACTGGTCGCCCGCCGTTGCTAGAATCGCCGGCATCACTCTTTCCGCACAC
GCGCTTCGCCGAGAAGTTCCACAAGCTTCTTCGCTTCATCTGAACACTCC
CATCCCTGCACTGCACGATCAAAACAGATTATATACACCTACATCGACGA
TGCTCAGTAAGACATTTTCCTTTCTGGCTGGTATGGCCGCTCTCGCCGTC
AGCGCGGCTGACGATGCAACCAAGGTGACTCATAAGGTCTTCTTTGACAT
CAACGTGGGGGACAAGCCCGCGGGCCGCATCGTCTTTGGGCTGTACGGGA
ACACCGTCCCTAAGACTGTGGAGAATTTCCGCGCGCTTTGCACGGGCGAG
AAGGGCATGGGCAAGCAGGGTCATGAGCTCACCTACAAGGGGTCCAAGTT
CCATCGTGTGATTCCCTCCTTCATGTTGCAGGGCGGGGACTTCACCCACG
GCAATGGCATGGGCGGCGAGTCTATCTATGGAGCCAAATTTGCTGACGAA
AATTTCACCCTCAAGCACTCTCGCCCGGGCCTCCTGTCTATGGCCAATGC
CGGGCGTGACACCAACGGCTCCCAATTCTTCATTACCACGGTGGTCACCT
CCTGGTTGGACGGGCGTCATGTTGTGTTTGGCGAGGTGCTGGAGGGCATG
GACGTGGTCAAGATGATCGAGGGCTTGGGCAGCAATGACGGGACGGTCAA
GACCCCGGTGGTGATTGCCGACTCGGGGGAGCTAAAGTAAACGAATTCAG
GATTAGGACCGATAGGTCGCTTTTCCACATGTACTTTGTTGTTGTCGTAG
TTGATAGGTTCAGCCCCTTTCATTAACGGCACTGGATCACTGGAACGCGG
TGGCTGGGACAAGACACGAAGCAGTAAGACGGCGAAGATAAAAAAGCAAA
AGAGACGGATAAAAAGACGCACAGAAAGTTCTAGAACGCTTTCAGCGAGA
AGTATGAAAGAGGAGTGTGAACAGGGGAAAGGAGAGGACGGAACATGATG
GGCACGTGTATCGGTCTACTTGTCTTGAGAAATGTGCTCGGCAATCCCCT
CCGAGAAAGGAAAAATTAGATAAAAAAGTGTGGGAGACAACGATAGCAAG
GATACATACGTTGTCACGCGAGA
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protein sequence of NO10G02370.1

>NO10G02370.1-protein ID=NO10G02370.1-protein|Name=NO10G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MLSKTFSFLAGMAALAVSAADDATKVTHKVFFDINVGDKPAGRIVFGLYG
NTVPKTVENFRALCTGEKGMGKQGHELTYKGSKFHRVIPSFMLQGGDFTH
GNGMGGESIYGAKFADENFTLKHSRPGLLSMANAGRDTNGSQFFITTVVT
SWLDGRHVVFGEVLEGMDVVKMIEGLGSNDGTVKTPVVIADSGELK*
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mRNA from alignment at chr10:646887..650035+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02370.1 ID=NO10G02370.1|Name=NO10G02370.1|organism=Nannochloropsis oceanica|type=mRNA|length=3149bp|location=Sequence derived from alignment at chr10:646887..650035+ (Nannochloropsis oceanica)
GCCACAATCTCCATCAATGCTCTTGCAGCCTTCTCGTCCCTTGGGGTGAC
TTTTCCCGCCCTTTCATCCAAAGATACAGAATCCAATAAGATGACTCCTA
GGAGGAGTAATGCCACGGGAGTGGTCAGGAGGGAGGAAGAGGAGGAGTAG
GGGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGGCCGAGGTATCG
CTCTGCCACTAACGTGCATGTAGATGCCACTAAAGCACGGCCAACAGTTA
CACTATTGGTACTCAGGCTGCGACTGATACTCAGGTCATTTTCGCTGTCG
ATGCTGCTGCAGCTGTTGTTGTGATCGCGGTTATTGTGCTTGTGGTTGCT
ATCCAAGTCGGGTGGTTCGGACGAAAACGCGATGTCACGCTTGGATTCCG
TGATCCATTCGTAAAGGCCTTGGTCTTCGTGGTGATCGACAATGCCTTCG
ATCAGCTGAGTGGGTAGAGGGAGGGAGGGAGGGACGGGGAGAGGGATGGA
AGATTGGGTGATGGGATAGTGGTGACGAACATAAATAGTTCCACATAAGG
AAAGGACAAGGCAAATTACCTCTCCCAGACCCTGCAGGGGCTCGGTAATC
TTGTTGTGATCCGTGAGTATCACGCCAGCAAGTTTCCCTTCGGCAGCGGC
CTCGGTTAAGTCCACTTCGTCGATGAAGACCATGTCGCTTACAGTAGTCT
CCTTCAGATTCGCCAAACGAAACAGCAGCAATGTCTCAGGCCGAAACTTG
AGCTCGGCGCGTGGCAAGGGCAAGACAGGCACATATTGTACACCTGCTGC
GCTGTCCTCGGAGGAGCGGGTGGCATGCAAGTAGTGGGCAAGGCAGATAG
AGGAGACAATGGTGTCGGCATCGGCCGCTTCGTTCCCTACAACTACCTTG
ATGTGCTTCTTATTGGCTTCGAGCAACGCCGAACGAGCTCCTTTTAGAAA
CGACGGAATCGTCAATGGGGTTAGGGAAGGAGAGGAAGAAGCCATCTGCG
TGGGTGCTGGGTTAAGACGAGTGGCAAATGAGAAGAGGAGGGGGTCGCAC
CGGCGTGGACTGAAGAGGAAGAAAATGCTTCTGGACCTGGAGGTGGGAGA
AAATGCAACCACTGCGCTAGTAACGAGGAGGGAAAGGAAAGTGGCTCTGG
GACCATGACCAGGCATTGACTGCCTGATTTTCCTGTTGCGTGTGTAATGA
TGCGTGGGATGGGGGAGCGGGAGTGGGGCAGGCAAACGAAACTCACGACA
AAGATGCGACCCGGAAGACAGCAAGTCCGCCCCGGCTGGTTGCCCACCCA
CGCCCCTTGCCTGGTACACGCAGTGTTCCTTTCTCCCTCCCGGTCCGCGC
TCCAATTTTTCGCACACGCCCTCTCTTGTGCATTGTACAGCGCAGATGCG
ACTGGTCGCCCGCCGTTGCTAGAATCGCCGGCATCACTCTTTCCGCACAC
GCGCTTCGCCGAGAAGTTCCACAAGCTTCTTCGCTTCATCTGAACACTCC
CATCCCTGCACTGCACGATCAAAACAGATTATATACACCTACATCGACGA
TGCTCAGTAAGACATTTTCCTTTCTGGCTGGTATGGCCGCTCTCGCCGTC
AGGTACGCACCCACACGCACCCCCTATTTTTTCCCCGTAGTCGAATCTCA
GTGAGCATTCGAACGTAGTTATTCGTTCGTTTCCTTTTTGTTCATCTCAA
GCATAAACTCCATTCTGCCACGCACCAAATACACAGCGCGGCTGACGATG
CAACCAAGGTGACTCATAAGGTCTTCTTTGACATCAACGTGGGGGACAAG
GTACGTTTCTTTTCGGTAACGTGATGGCAGGCATCAAGAAGCTTATCAAT
TCCTCGCATCGCCTCCTACCCCTTCGCATCGCTCGCACCCTCTTTCCCAG
CCCGCGGGCCGCATCGTCTTTGGGCTGTACGGGAACACCGTCCCTAAGAC
TGTGGAGAATTTCCGCGCGCTTTGCACGGGCGAGAAGGGCATGGGCAAGC
AGGGTCATGAGCTCACCTACAAGGGGTCCAAGTTCCATCGTGTGATTCCC
TCCTTCATGTTGCAGGGCGGGGACTTCACCCACGGCAATGGCATGGGCGG
CGAGTCTATCTATGGGTATGTGTGACAGAATAGAAGGGTTTGTTGGGATG
AATGGTGACGAGGCACATTTTGAAAAAAATGCTTCTCTATCGAGCAAGGT
AACACCATTTCTGAATGTTTGTTCCATCAGCTTCCGCTCACGGCTCACGG
ACTCTTTTCTCTTTTCCTTTCTATTTTCTCGCCACATCACAGAGCCAAAT
TTGCTGACGAAAATTTCACCCTCAAGCACTCTCGCCCGGGCCTCCTGTCT
ATGGCCAATGCCGGGCGTGACACCAACGGCTCCCAATTCTTCATTACCAC
GGTGGTCACCTCCTGGTACTGTTGGTTTGGGTTTTTGTTTTGATTAATTT
GGGTTTTAGTATTGCTTAGTATGGGTTTTGTATTTCTTATTGGTAGTCCT
GTCTGCTTTTACTCATTTATCCATACATCGTACCTGTTTGCTTCATATTG
GCACTCCCACGTTTATTGTTATTCATTGACCTTATCCTTCCTTTTCCCTT
TTTTTTTGTCTTGTTGCATTTTCTATATAGGTTGGACGGGCGTCATGTTG
TGTTTGGCGAGGTGCTGGAGGGCATGGACGTGGTCAAGATGATCGAGGGC
TTGGGCAGCAATGACGGGACGGTCAAGACCCCGGTGGTGATTGCCGACTC
GGGGGAGCTAAAGTAAACGAATTCAGGATTAGGACCGATAGGTCGCTTTT
CCACATGTACTTTGTTGTTGTCGTAGTTGATAGGTTCAGCCCCTTTCATT
AACGGCACTGGATCACTGGAACGCGGTGGCTGGGACAAGACACGAAGCAG
TAAGACGGCGAAGATAAAAAAGCAAAAGAGACGGATAAAAAGACGCACAG
AAAGTTCTAGAACGCTTTCAGCGAGAAGTATGAAAGAGGAGTGTGAACAG
GGGAAAGGAGAGGACGGAACATGATGGGCACGTGTATCGGTCTACTTGTC
TTGAGAAATGTGCTCGGCAATCCCCTCCGAGAAAGGAAAAATTAGATAAA
AAAGTGTGGGAGACAACGATAGCAAGGATACATACGTTGTCACGCGAGA
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Coding sequence (CDS) from alignment at chr10:646887..650035+

>NO10G02370.1 ID=NO10G02370.1|Name=NO10G02370.1|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at chr10:646887..650035+ (Nannochloropsis oceanica)
ATGCTCAGTAAGACATTTTCCTTTCTGGCTGGTATGGCCGCTCTCGCCGT
CAGCGCGGCTGACGATGCAACCAAGGTGACTCATAAGGTCTTCTTTGACA
TCAACGTGGGGGACAAGCCCGCGGGCCGCATCGTCTTTGGGCTGTACGGG
AACACCGTCCCTAAGACTGTGGAGAATTTCCGCGCGCTTTGCACGGGCGA
GAAGGGCATGGGCAAGCAGGGTCATGAGCTCACCTACAAGGGGTCCAAGT
TCCATCGTGTGATTCCCTCCTTCATGTTGCAGGGCGGGGACTTCACCCAC
GGCAATGGCATGGGCGGCGAGTCTATCTATGGAGCCAAATTTGCTGACGA
AAATTTCACCCTCAAGCACTCTCGCCCGGGCCTCCTGTCTATGGCCAATG
CCGGGCGTGACACCAACGGCTCCCAATTCTTCATTACCACGGTGGTCACC
TCCTGGTTGGACGGGCGTCATGTTGTGTTTGGCGAGGTGCTGGAGGGCAT
GGACGTGGTCAAGATGATCGAGGGCTTGGGCAGCAATGACGGGACGGTCA
AGACCCCGGTGGTGATTGCCGACTCGGGGGAGCTAAAGTAA
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Synonyms
Publications