NO10G02340.1, NO10G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02340.1
Unique NameNO10G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length740
Alignment locationchr10:641438..642394 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:641438..642394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02340.1 vs.
Match: EWM25462.1 (translation initiation factor if-1 [Nannochloropsis gaditana])

HSP 1 Score: 180.6 bits (457), Expect = 3.900e-42
Identity = 116/170 (68.24%), Postives = 122/170 (71.76%), Query Frame = 0 
Query:    1 MLGRASILVAAVAVILMLVEQATAFMGPLPRAGKGIVGDSSANSQRQHMDRRVGEQLHFQS------SSTALWAKKNKESDVIEVDGIVKESLPNAKFRVELLATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRPGSPQFPTPDAPPPP 165
            MLGR S L  A + ILML  Q T F+G LP A K        NS  Q    R G +   +       SS AL AKKNKESDVIEVDGIVKESLPNAKFRVEL+ATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDR  S   P PD+ PPP
Sbjct:    1 MLGRLSFLAIA-STILMLAVQITGFVGLLPGACKRAA--DIQNSMYQWPFVRTGTEGPTRREDRTFWSSLALCAKKNKESDVIEVDGIVKESLPNAKFRVELVATKAVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRSPS---PPPDSTPPP 164
The following BLAST results are available for this feature:
BLAST of NO10G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25462.13.900e-4268.24translation initiation factor if-1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02340NO10G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02340.1NO10G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02340.1.cds1NO10G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02340.1.cds2NO10G02340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02340.1.cds3NO10G02340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02340.1 ID=NO10G02340.1|Name=NO10G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=740bp
GCATACGCAGCAGAGACCATTAAGGTGAGTTTCAGGAGGGTTGGCTTGCA
TGGCATGGTTTTTGGCCTTGGAGGGAGAGCATGACTGTGCGTAGGCTTAG
CGAGTGCGTGCGTGCCGGGGTATGTCGCTTGGCGCCGCACTCCCCGCCAC
ATCAAAACAGCACCGGCGCTCCCAAATTTCGGTAGGATTATTCATTTCCC
CTCCTTGCAATCGATCCTTCCATAAAAGTGTCAATTATGTTAGGCCGGGC
TTCGATCCTTGTTGCGGCGGTAGCAGTCATATTGATGCTTGTAGAGCAAG
CGACGGCGTTTATGGGACCGCTACCACGAGCAGGAAAGGGGATTGTTGGA
GATAGCAGCGCCAACAGTCAAAGACAGCACATGGACAGACGGGTTGGCGA
GCAGCTCCATTTCCAGTCGTCTTCAACGGCATTGTGGGCCAAGAAGAACA
AGGAGTCGGACGTGATTGAGGTGGACGGAATCGTCAAGGAATCTCTCCCC
AATGCCAAGTTTCGAGTTGAGCTCCTGGCTACCAAGGCCGTCATTGTCTG
CTCCACATCTGGGAAAATGCGCAAAAACTTTGTGCGTGTCCTTGTCGGCG
ACCCCGTCAAGGTCGAGCTCTCTCCCTATGATTTAACACGTGGCCGCATC
ACCTACCGCTCGCGAGGCCCTGGAAAGGATCGCCCTGGGTCTCCGCAATT
CCCTACGCCTGATGCCCCCCCTCCTCCTCCTTCCTCCTAA
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protein sequence of NO10G02340.1

>NO10G02340.1-protein ID=NO10G02340.1-protein|Name=NO10G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MLGRASILVAAVAVILMLVEQATAFMGPLPRAGKGIVGDSSANSQRQHMD
RRVGEQLHFQSSSTALWAKKNKESDVIEVDGIVKESLPNAKFRVELLATK
AVIVCSTSGKMRKNFVRVLVGDPVKVELSPYDLTRGRITYRSRGPGKDRP
GSPQFPTPDAPPPPPSS*
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mRNA from alignment at chr10:641438..642394+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02340.1 ID=NO10G02340.1|Name=NO10G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at chr10:641438..642394+ (Nannochloropsis oceanica)
GCATACGCAGCAGAGACCATTAAGGTGAGTTTCAGGAGGGTTGGCTTGCA
TGGCATGGTTTTTGGCCTTGGAGGGAGAGCATGACTGTGCGTAGGCTTAG
CGAGTGCGTGCGTGCCGGGGTATGTCGCTTGGCGCCGCACTCCCCGCCAC
ATCAAAACAGCACCGGCGCTCCCAAATTTCGGTAGGATTATTCATTTCCC
CTCCTTGCAATCGATCCTTCCATAAAAGTGTCAATTATGTTAGGCCGGGC
TTCGATCCTTGTTGCGGCGGTAGCAGTCATATTGATGCTTGTAGAGCAAG
CGACGGCGTTTATGGGACCGCTACCACGAGCAGGAAAGGGGATTGTTGGA
GATAGCAGCGCCAACAGTCAAAGACAGCACATGGACAGACGGGTTGGCGA
GCAGCTCCATTTCCAGGTGGGAACGTGGTGGAAACAGGGACGCACGAAAT
CATTTTGTTAAATTGTCTACGCACCCGCGCTCACACCTCGTCATTTCTTT
CGTTCTCCATCCCTACCATACACATCAATGGCTTCAACAACAGTCGTCTT
CAACGGCATTGTGGGCCAAGAAGAACAAGGAGTCGGACGTGATTGAGGTA
CGTTCCATGAATGACCAGCCGGCGACACATGTCCAATTCTCCTCTCCTGG
ATTTCTCACACTCTTCCCTTCATTCTCCCCATCAAAGGTGGACGGAATCG
TCAAGGAATCTCTCCCCAATGCCAAGTTTCGAGTTGAGCTCCTGGCTACC
AAGGCCGTCATTGTCTGCTCCACATCTGGGAAAATGCGCAAAAACTTTGT
GCGTGTCCTTGTCGGCGACCCCGTCAAGGTCGAGCTCTCTCCCTATGATT
TAACACGTGGCCGCATCACCTACCGCTCGCGAGGCCCTGGAAAGGATCGC
CCTGGGTCTCCGCAATTCCCTACGCCTGATGCCCCCCCTCCTCCTCCTTC
CTCCTAA
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Coding sequence (CDS) from alignment at chr10:641438..642394+

>NO10G02340.1 ID=NO10G02340.1|Name=NO10G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr10:641438..642394+ (Nannochloropsis oceanica)
ATGTTAGGCCGGGCTTCGATCCTTGTTGCGGCGGTAGCAGTCATATTGAT
GCTTGTAGAGCAAGCGACGGCGTTTATGGGACCGCTACCACGAGCAGGAA
AGGGGATTGTTGGAGATAGCAGCGCCAACAGTCAAAGACAGCACATGGAC
AGACGGGTTGGCGAGCAGCTCCATTTCCAGTCGTCTTCAACGGCATTGTG
GGCCAAGAAGAACAAGGAGTCGGACGTGATTGAGGTGGACGGAATCGTCA
AGGAATCTCTCCCCAATGCCAAGTTTCGAGTTGAGCTCCTGGCTACCAAG
GCCGTCATTGTCTGCTCCACATCTGGGAAAATGCGCAAAAACTTTGTGCG
TGTCCTTGTCGGCGACCCCGTCAAGGTCGAGCTCTCTCCCTATGATTTAA
CACGTGGCCGCATCACCTACCGCTCGCGAGGCCCTGGAAAGGATCGCCCT
GGGTCTCCGCAATTCCCTACGCCTGATGCCCCCCCTCCTCCTCCTTCCTC
CTAA
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Synonyms
Publications