NO10G02250.1, NO10G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02250.1
Unique NameNO10G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1645
Alignment locationchr10:617954..620183 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:617954..620183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02250.1 vs.
Match: XP_003032065.1 (glycoside hydrolase family 5 protein [Schizophyllum commune H4-8]; EFI97162.1 glycoside hydrolase family 5 protein [Schizophyllum commune H4-8])

HSP 1 Score: 180.6 bits (457), Expect = 1.100e-41
Identity = 103/311 (33.12%), Postives = 163/311 (52.41%), Query Frame = 0 
Query:   65 RGVNLGGWLLIESWMYPNFYKTLGIETWLGEMQVVDALGGKEKARPFLEEHWDTWVTKQDLQNLKDGGITHIRIPIGYWIL-----GEEFLKPGETYLPGAWPYLLRSLKWCKELGLKAIVDLHGAPGVQNGHDNGGFEGGN-ESIMWGEPENQKRTTDVLVYLAKN-------LTVVNATAGYEGSLQGLCLLNEPWTTTVGGPLSMQLVKDWVQEATDAVL-AAGWKGDIWFPDGFDLTWKGWEGFLQPPQYHNIYADSHLYMLFDPALWKLGAKAQTNNICQGYTTTQLEKVKGKIASGV--VIGEYS 360
            RGVNLGGWL++E W+ P+F++  G +  + E   +  L  ++ AR  L+ HW+TW+T+QD +++   G+TH+RIP+GYW +        +      YL GAWPYLLR L W +  G++ IVD+HGAPG QNG+DN G   GN + +  G+ EN +RT D++ +LA N       L ++N  AG+ G         + W          Q ++ + ++  D V   AG    +   D F L    W+GFL       +  D H+Y +F           ++N+    +  T+  ++ G  +S +  V+GE+S
Sbjct:   82 RGVNLGGWLVLEPWITPSFFEETGNDDIVDEY-TLGQLMDEDDARKMLKNHWETWITEQDFKDIAAAGLTHVRIPLGYWSVPMTSADTNYSTSISPYLDGAWPYLLRGLNWARAHGVRCIVDVHGAPGSQNGYDNSGQRTGNPQFVSGGDNENVERTLDLVRFLADNIGGMVDVLELLNEGAGFRG---------DDWA---------QAIRGFFEDGYDVVRNTAGDDIKVMIGDAF-LGVNSWDGFLGSGDAQGVIMDYHMYQIFSN-----DELRRSNDEHIEFACTKKTELTGYASSNIWTVVGEWS 367
The following BLAST results are available for this feature:
BLAST of NO10G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_003032065.11.100e-4133.12glycoside hydrolase family 5 protein [Schizophyllu... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02250NO10G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02250.1NO10G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02250.1.cds1NO10G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02250.1.cds2NO10G02250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02250.1.cds3NO10G02250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02250.1.cds4NO10G02250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02250.1.cds5NO10G02250.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02250.1 ID=NO10G02250.1|Name=NO10G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
AGAAGCATGCGTCCCTACTCGACTGCGGCGTTCCTCGCCGTCGTCCTACT
CGCAGAGGGAATAGATGCCCAAAAATTGCGAAGCACAGGTGGAAAGGGTA
TGGTGGGTGTGGAAATGACGGCTCAGAGAACTGGCAGTGTAAAAATGGTG
CCTGGGAATGGCAAGGCGGCCGAGGGTGCGGGCGAGAAGCGACAGTATCG
AGGTGTGAACCTGGGCGGCTGGCTGCTAATTGAGTCCTGGATGTATCCGA
ATTTTTACAAGACCCTTGGAATCGAGACATGGTTGGGGGAGATGCAGGTT
GTCGATGCCCTTGGGGGCAAGGAGAAGGCTAGGCCCTTTTTGGAGGAGCA
CTGGGATACATGGGTTACCAAACAAGATTTACAGAATCTGAAGGACGGAG
GTATAACCCATATCCGTATCCCAATTGGTTATTGGATTTTGGGGGAAGAA
TTCTTGAAGCCTGGTGAGACGTACCTGCCCGGGGCGTGGCCTTATTTATT
GCGGTCCCTGAAGTGGTGTAAGGAGTTGGGATTGAAGGCCATTGTTGACC
TTCACGGCGCGCCGGGAGTGCAGAACGGTCACGACAACGGCGGCTTTGAG
GGCGGTAACGAGTCGATCATGTGGGGCGAGCCGGAGAACCAAAAGCGGAC
CACTGACGTCCTGGTGTACCTGGCCAAGAATCTTACCGTCGTCAATGCCA
CTGCTGGTTATGAAGGTTCATTGCAAGGCCTTTGCCTGCTGAATGAACCG
TGGACTACGACCGTGGGGGGGCCCCTGAGCATGCAGCTTGTCAAGGACTG
GGTGCAGGAGGCGACGGACGCTGTGCTTGCTGCGGGCTGGAAGGGGGATA
TTTGGTTTCCTGATGGCTTTGATCTTACTTGGAAGGGATGGGAGGGCTTC
CTCCAACCCCCCCAGTACCACAATATCTACGCCGACTCCCATCTCTACAT
GCTCTTCGACCCGGCCCTGTGGAAGTTAGGCGCTAAGGCGCAAACCAACA
ATATCTGCCAAGGGTACACCACCACGCAATTGGAGAAGGTGAAGGGGAAG
ATCGCCTCGGGTGTAGTGATTGGAGAGTATTCTCTTGACTTTTTGACGTT
CCCTGATTTCCCCTACGACGCGGAGACGGAGAAGAATCTGCAAAATCTGC
TATTGGCCGAGCAGAAGATGTATGGAGTGATCGGTAATGCTGATAATGCT
GCCGTCGGTGCCTTCTTTTGGTCGTTCAAATCTCTGGGGCGTGTCAAGGA
TGATCTGACAAAGTTGGAGGATAACCCTCACTCGCCCTGGTCCTACCTGT
CTTTGCTTAAAGACGGTATTGCCTCCAAAGACCTTGCCAAGGCCGAATTC
AATTGTACGGCTTTCATCGCGGGGTATGCCAACCAGCCCCCTCCTGCGGC
TACGCCGGGTGTGACCACGGCTGGTGGGCCCTCGGGTGGCGCGGTACAGT
AGGGCGCTAGTTGGTCCAGGCAGCAGGAGCAGTGGTTTGGAGAGACATGC
TCTTCAAGCGATCGATTTACTTGTTCGTTTCATAACATTTATTCTTAATT
CACTCATTCATTTATTAATTCTTCTGGAGAGTTGGGGATTAGAGTAAGAT
TAAGGAACTGACGATGGGAGGGGACCCGAATTGCTATCATAAAAT
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protein sequence of NO10G02250.1

>NO10G02250.1-protein ID=NO10G02250.1-protein|Name=NO10G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=482bp
MRPYSTAAFLAVVLLAEGIDAQKLRSTGGKGMVGVEMTAQRTGSVKMVPG
NGKAAEGAGEKRQYRGVNLGGWLLIESWMYPNFYKTLGIETWLGEMQVVD
ALGGKEKARPFLEEHWDTWVTKQDLQNLKDGGITHIRIPIGYWILGEEFL
KPGETYLPGAWPYLLRSLKWCKELGLKAIVDLHGAPGVQNGHDNGGFEGG
NESIMWGEPENQKRTTDVLVYLAKNLTVVNATAGYEGSLQGLCLLNEPWT
TTVGGPLSMQLVKDWVQEATDAVLAAGWKGDIWFPDGFDLTWKGWEGFLQ
PPQYHNIYADSHLYMLFDPALWKLGAKAQTNNICQGYTTTQLEKVKGKIA
SGVVIGEYSLDFLTFPDFPYDAETEKNLQNLLLAEQKMYGVIGNADNAAV
GAFFWSFKSLGRVKDDLTKLEDNPHSPWSYLSLLKDGIASKDLAKAEFNC
TAFIAGYANQPPPAATPGVTTAGGPSGGAVQ*
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mRNA from alignment at chr10:617954..620183-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02250.1 ID=NO10G02250.1|Name=NO10G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2230bp|location=Sequence derived from alignment at chr10:617954..620183- (Nannochloropsis oceanica)
AGAAGCATGCGTCCCTACTCGACTGCGGCGTTCCTCGCCGTCGTCCTACT
CGCAGAGGGAATAGATGCCCAAAAATTGCGAAGCACAGGTGGAAAGGGTA
TGGTGGGTGTGGAAATGACGGCTCAGAGAACTGGCAGTGTAAAAATGGTG
CCTGGGAATGGCAAGGCGGCCGAGGGTGCGGGCGAGAAGCGACAGTATCG
AGGTAAGGGGCCGGCAGAAGAGAGGGCCGGTAGAAGAGGGAGGAATGCAC
CATGAATACTGTGCGAGGCCTTTGACTCATTGTCCATATATTCACATTTC
TCACTCATGACTGTACAGGTGTGAACCTGGGCGGCTGGCTGGTAAGTTTT
AGAACAGAAATGGGAAGTGAAGGAGGAGAATGGGCCAGTGATATGACAAT
GTGGGTGGGCCATCGTTGCCCTCGTAGCTTATCTCCCCCTCATCCTCGTT
CCCCTTCCTCCTCTTCCCTCTTCCAGCTAATTGAGTCCTGGATGTATCCG
AATTTTTACAAGACCCTTGGAATCGAGACATGGTTGGGGGAGATGCAGGT
TGTCGATGCCCTTGGGGGCAAGGAGAAGGCTAGGCCCTTTTTGGAGGAGC
ACTGGGATACATGGGTTACCAAACAAGATTTACAGAATCTGAAGGACGGA
GGTATAACCCATATCCGTATCCCAATTGGTTATTGGATTTTGGGGGAAGA
ATTCTTGAAGCCTGGTGAGACGTACCTGCCCGGGGCGTGGCCTTATTTAT
TGCGGTCCCTGAAGTGGTGTAAGGAGTTGGGATTGAAGGCCATTGTTGAC
CTTCACGGCGCGCCGGGAGTGCAGAACGGTGAGTACTTTTGTTCTAAGAA
AAAGGAAAAATGTGTGGCGGTGATAGATCTCTCATTGGTATGTCACCACC
TATATTTCTCTGCCATTTGCTACAGGTCACGACAACGGCGGCTTTGAGGG
CGGTAACGAGTCGATCATGTGGGGCGAGCCGGAGAACCAAAAGCGGACCA
CTGACGTCCTGGTGTACCTGGCCAAGAATCTTACCGTCGTCAATGCCACT
GCTGGTTATGAAGGTTCATTGCAAGGCCTTTGCCTGCTGAATGAACCGTG
GACTACGACCGTGGGGGGGCCCCTGAGCATGCAGCTTGTCAAGGACTGGG
TGCAGGAGGCGACGGACGCTGTGCTTGCTGCGGGCTGGAAGGGGGATATT
TGGTTTCCTGATGGCTTTGATCTTACTTGTACGTACATGTCTGGATCATG
CATTAACGGATGTGGGGTTGGTGGCTTTGTAGGGTGATGGTGTTTGGCAT
GCATGCTATGTCGTGTCGCGCCGACAGACCCAATCTTCATGATCTATCTT
TTCTATCTGAAAAATGATAACTTCCCTCCCCAGGCACTTCCTCTTCACAC
CATACGTTACATCACTAACAAACTTCATTCTTCTTCTTCTTCTTTTTTTA
AATTCAATCTCACAGGGAAGGGATGGGAGGGCTTCCTCCAACCCCCCCAG
TACCACAATATCTACGCCGACTCCCATCTCTACATGCTCTTCGACCCGGC
CCTGTGGAAGTTAGGCGCTAAGGCGCAAACCAACAATATCTGCCAAGGGT
ACACCACCACGCAATTGGAGAAGGTGAAGGGGAAGATCGCCTCGGGTGTA
GTGATTGGAGAGTATTCTCTTGACTTTTTGACGTTCCCTGATTTCCCCTA
CGACGCGGAGACGGAGAAGAATCTGCAAAATCTGCTATTGGCCGAGCAGA
AGATGTATGGAGTGATCGGTAATGCTGATAATGCTGCCGTCGGTGCCTTC
TTTTGGTCGTTCAAATCTCTGGGGCGTGTCAAGGATGATCTGACAAAGTT
GGAGGATAACCCTCACTCGCCCTGGTCCTACCTGTCTTTGCTTAAAGACG
GTATTGCCTCCAAAGACCTTGCCAAGGCCGAATTCAATTGTACGGCTTTC
ATCGCGGGGTATGCCAACCAGCCCCCTCCTGCGGCTACGCCGGGTGTGAC
CACGGCTGGTGGGCCCTCGGGTGGCGCGGTACAGTAGGGCGCTAGTTGGT
CCAGGCAGCAGGAGCAGTGGTTTGGAGAGACATGCTCTTCAAGCGATCGA
TTTACTTGTTCGTTTCATAACATTTATTCTTAATTCACTCATTCATTTAT
TAATTCTTCTGGAGAGTTGGGGATTAGAGTAAGATTAAGGAACTGACGAT
GGGAGGGGACCCGAATTGCTATCATAAAAT
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Coding sequence (CDS) from alignment at chr10:617954..620183-

>NO10G02250.1 ID=NO10G02250.1|Name=NO10G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=1446bp|location=Sequence derived from alignment at chr10:617954..620183- (Nannochloropsis oceanica)
ATGCGTCCCTACTCGACTGCGGCGTTCCTCGCCGTCGTCCTACTCGCAGA
GGGAATAGATGCCCAAAAATTGCGAAGCACAGGTGGAAAGGGTATGGTGG
GTGTGGAAATGACGGCTCAGAGAACTGGCAGTGTAAAAATGGTGCCTGGG
AATGGCAAGGCGGCCGAGGGTGCGGGCGAGAAGCGACAGTATCGAGGTGT
GAACCTGGGCGGCTGGCTGCTAATTGAGTCCTGGATGTATCCGAATTTTT
ACAAGACCCTTGGAATCGAGACATGGTTGGGGGAGATGCAGGTTGTCGAT
GCCCTTGGGGGCAAGGAGAAGGCTAGGCCCTTTTTGGAGGAGCACTGGGA
TACATGGGTTACCAAACAAGATTTACAGAATCTGAAGGACGGAGGTATAA
CCCATATCCGTATCCCAATTGGTTATTGGATTTTGGGGGAAGAATTCTTG
AAGCCTGGTGAGACGTACCTGCCCGGGGCGTGGCCTTATTTATTGCGGTC
CCTGAAGTGGTGTAAGGAGTTGGGATTGAAGGCCATTGTTGACCTTCACG
GCGCGCCGGGAGTGCAGAACGGTCACGACAACGGCGGCTTTGAGGGCGGT
AACGAGTCGATCATGTGGGGCGAGCCGGAGAACCAAAAGCGGACCACTGA
CGTCCTGGTGTACCTGGCCAAGAATCTTACCGTCGTCAATGCCACTGCTG
GTTATGAAGGTTCATTGCAAGGCCTTTGCCTGCTGAATGAACCGTGGACT
ACGACCGTGGGGGGGCCCCTGAGCATGCAGCTTGTCAAGGACTGGGTGCA
GGAGGCGACGGACGCTGTGCTTGCTGCGGGCTGGAAGGGGGATATTTGGT
TTCCTGATGGCTTTGATCTTACTTGGAAGGGATGGGAGGGCTTCCTCCAA
CCCCCCCAGTACCACAATATCTACGCCGACTCCCATCTCTACATGCTCTT
CGACCCGGCCCTGTGGAAGTTAGGCGCTAAGGCGCAAACCAACAATATCT
GCCAAGGGTACACCACCACGCAATTGGAGAAGGTGAAGGGGAAGATCGCC
TCGGGTGTAGTGATTGGAGAGTATTCTCTTGACTTTTTGACGTTCCCTGA
TTTCCCCTACGACGCGGAGACGGAGAAGAATCTGCAAAATCTGCTATTGG
CCGAGCAGAAGATGTATGGAGTGATCGGTAATGCTGATAATGCTGCCGTC
GGTGCCTTCTTTTGGTCGTTCAAATCTCTGGGGCGTGTCAAGGATGATCT
GACAAAGTTGGAGGATAACCCTCACTCGCCCTGGTCCTACCTGTCTTTGC
TTAAAGACGGTATTGCCTCCAAAGACCTTGCCAAGGCCGAATTCAATTGT
ACGGCTTTCATCGCGGGGTATGCCAACCAGCCCCCTCCTGCGGCTACGCC
GGGTGTGACCACGGCTGGTGGGCCCTCGGGTGGCGCGGTACAGTAG
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Synonyms
Publications