NO10G02240.1, NO10G02240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02240.1
Unique NameNO10G02240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1137
Alignment locationchr10:616363..617771 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:616363..617771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02240.1 vs.
Match: EWM25366.1 (indole-3-glycerol phosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 466.8 bits (1200), Expect = 6.200e-128
Identity = 245/317 (77.29%), Postives = 278/317 (87.70%), Query Frame = 0 
Query:   64 PHSSSI----DGGRGD-SKVKPLDWLEEVRRKNYEVQQLQETEEGARLRNRLSRMSLEGGYRVARAIKRSAKDQVHLMSVVAEIKRRTPTGAETPTEVAAISDVGLIARQLADCGADVLLVTTDEICYGGSVEDLRAVKAAFADVPEGDRPPIVAKDIYIHPLQIAQAIDAGADGVLLMASLMGASLNELLDACTCLGTEALVEVHTVAELEKALELGATNIVATNWDRIENVLYPNQAKGLKGLIPDLIVAIGAGGVGTVQDAAELADMGYDAAVLGRGLASSADIERLISTIRSRESLPNLLTGAGMMAEELKRG 376
            PH   I     GGR + SK   L+WLEEV+RKNYEVQQL+ETEEG+RL  RL  ++L GGYRVARA+KRS  +QVH+MSV+AEIKRRTPTG  TPTE+AAI+DVGL+ARQLADCGADVL+VTTDE CYGGS+ DLR+ + AFAD+P+  RPPIVAKDIYIHPLQI+QA++ GADGVLLMASLMGASL+ LLDACTCLG EALVEVHTVAELEKALELGATNIVATNWDRIEN LY +QAKGLKG+IPDLIVAI AG VGTV DAAELADMGYDA +LGRGLA+SADI R IS+IRSRES+P+LLTGAGMMAE+L+RG
Sbjct:   49 PHKFKIVNKYQGGRAEHSKAHSLNWLEEVQRKNYEVQQLRETEEGSRLLARLRSVNLVGGYRVARALKRSTGEQVHVMSVIAEIKRRTPTGDTTPTELAAIADVGLVARQLADCGADVLMVTTDETCYGGSIMDLRSAREAFADIPDEKRPPIVAKDIYIHPLQISQAMEHGADGVLLMASLMGASLSGLLDACTCLGLEALVEVHTVAELEKALELGATNIVATNWDRIENALYKDQAKGLKGMIPDLIVAICAGDVGTVDDAAELADMGYDAVILGRGLATSADITRFISSIRSRESMPSLLTGAGMMAEDLRRG 365
The following BLAST results are available for this feature:
BLAST of NO10G02240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25366.16.200e-12877.29indole-3-glycerol phosphate synthase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02240NO10G02240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02240.1NO10G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02240.1.cds1NO10G02240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02240.1.cds2NO10G02240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02240.1.cds3NO10G02240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02240.1 ID=NO10G02240.1|Name=NO10G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1137bp
ATGCCGCGCTCGGCATCGTCGCTTGTTGTGGCTCTGGCCGCCGTGCTCTT
TGCGCCACCATGCCCCTGCACCGGCTTCCTCTTGCCCACCAGTCCTTCAA
CATCGCGTTCGTCATCGTCCTCCAGCAGCAGCAGCAGCAGCGCACCGCGA
CTCACAGTCCCCTCAACACCACAAATCACCACCACTACACCGCATTCAAG
CTCAATCGACGGGGGACGAGGGGACAGCAAAGTAAAGCCATTGGATTGGC
TGGAAGAGGTGCGGCGGAAGAACTACGAGGTGCAGCAGCTACAAGAGACG
GAGGAAGGGGCGCGGCTGCGGAATCGCTTGAGTCGCATGAGCTTGGAAGG
CGGGTATCGTGTGGCACGGGCCATAAAGCGCAGCGCCAAGGACCAAGTCC
ATTTGATGAGCGTGGTGGCGGAGATCAAGCGCCGAACACCAACGGGCGCA
GAGACTCCGACTGAGGTTGCTGCCATTTCCGACGTGGGGTTGATTGCTCG
ACAGCTTGCTGATTGCGGTGCCGACGTCCTCCTTGTGACGACAGACGAGA
TATGTTACGGAGGCTCAGTGGAGGACCTACGAGCCGTCAAGGCAGCTTTT
GCCGATGTACCAGAGGGTGACAGGCCGCCCATCGTAGCTAAGGACATATA
CATCCACCCACTACAAATCGCCCAGGCCATTGACGCGGGGGCAGATGGCG
TACTCCTTATGGCTAGTTTGATGGGCGCCTCCCTTAACGAGCTCCTGGAC
GCCTGCACCTGCCTCGGTACCGAAGCCCTTGTTGAGGTCCACACAGTCGC
CGAGCTCGAAAAGGCCCTTGAACTAGGCGCCACCAACATCGTCGCCACCA
ACTGGGATCGGATCGAGAATGTGCTCTACCCCAATCAAGCGAAAGGGCTC
AAAGGGCTTATTCCTGATCTGATCGTGGCCATTGGCGCCGGTGGGGTGGG
AACAGTTCAGGATGCCGCAGAACTAGCGGACATGGGCTACGATGCTGCTG
TATTGGGAAGGGGTTTGGCTTCCTCGGCGGATATTGAACGGCTGATTTCG
ACGATCCGGTCGAGGGAGTCCTTGCCCAATTTGTTGACCGGCGCGGGGAT
GATGGCGGAGGAGCTAAAGCGAGGGGAAGGCGACTAA
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protein sequence of NO10G02240.1

>NO10G02240.1-protein ID=NO10G02240.1-protein|Name=NO10G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPRSASSLVVALAAVLFAPPCPCTGFLLPTSPSTSRSSSSSSSSSSSAPR
LTVPSTPQITTTTPHSSSIDGGRGDSKVKPLDWLEEVRRKNYEVQQLQET
EEGARLRNRLSRMSLEGGYRVARAIKRSAKDQVHLMSVVAEIKRRTPTGA
ETPTEVAAISDVGLIARQLADCGADVLLVTTDEICYGGSVEDLRAVKAAF
ADVPEGDRPPIVAKDIYIHPLQIAQAIDAGADGVLLMASLMGASLNELLD
ACTCLGTEALVEVHTVAELEKALELGATNIVATNWDRIENVLYPNQAKGL
KGLIPDLIVAIGAGGVGTVQDAAELADMGYDAAVLGRGLASSADIERLIS
TIRSRESLPNLLTGAGMMAEELKRGEGD*
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mRNA from alignment at chr10:616363..617771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02240.1 ID=NO10G02240.1|Name=NO10G02240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp|location=Sequence derived from alignment at chr10:616363..617771- (Nannochloropsis oceanica)
ATGCCGCGCTCGGCATCGTCGCTTGTTGTGGCTCTGGCCGCCGTGCTCTT
TGCGCCACCATGCCCCTGCACCGGCTTCCTCTTGCCCACCAGTCCTTCAA
CATCGCGTTCGTCATCGTCCTCCAGCAGCAGCAGCAGCAGCGCACCGCGA
CTCACAGTCCCCTCAACACCACAAATCACCACCACTACACCGCATTCAAG
CTCAATCGACGGGGGACGAGGGGACAGCAAAGTAAAGCCATTGGATTGGC
TGGAAGAGGTGCGGCGGAAGAACTACGAGGTGCAGCAGCTACAAGAGACG
GAGGAAGGGGCGCGGCTGCGGAATCGCTTGAGTCGCATGAGCTTGGAAGG
CGGGTATCGTGTGGCACGGGCCATAAAGCGCAGCGCCAAGGACCAAGTCC
ATTTGATGAGCGTGGTGGCGGAGATCAAGCGCCGAACACCAACGGGCGCA
GAGACTCCGACTGAGGTTGCTGCCATTTCCGACGTGGGGTTGATTGCTCG
ACAGGTAGGGAGAGGAATATTCAGGAAGGGATGACAAGCAAAGGATGACG
AGCGGAGCATATTTGACACATTCTCTCCTTCCTTATACATGTGCAGCTTG
CTGATTGCGGTGCCGACGTCCTCCTTGTGACGACAGACGAGATATGTTAC
GGAGGCTCAGTGGAGGACCTACGAGCCGTCAAGGCAGCTTTTGCCGATGT
ACCAGAGGGTGACAGGCCGCCCATCGTAGCTAAGGACATATACATCCACC
CACTACAAATCGCCCAGGCCATTGACGCGGGGGCAGATGGCGTACTCCTT
ATGGCTAGTTTGGTACGTTGGGTGGATTAATGCTATCAAAGAGCAAGCAA
AGGCCTGCGCGCATGCATCCTCAGCCGTCATGTGAGCTTGATGGCGTGAA
CTCTTCCTCTGAGCAATCCTAAACAAACATAAACGATGTCAAAACACCCT
CAAGACGCCCTCCTCCACCATACAAAACCCATAAACTCACAGATGGGCGC
CTCCCTTAACGAGCTCCTGGACGCCTGCACCTGCCTCGGTACCGAAGCCC
TTGTTGAGGTCCACACAGTCGCCGAGCTCGAAAAGGCCCTTGAACTAGGC
GCCACCAACATCGTCGCCACCAACTGGGATCGGATCGAGAATGTGCTCTA
CCCCAATCAAGCGAAAGGGCTCAAAGGGCTTATTCCTGATCTGATCGTGG
CCATTGGCGCCGGTGGGGTGGGAACAGTTCAGGATGCCGCAGAACTAGCG
GACATGGGCTACGATGCTGCTGTATTGGGAAGGGGTTTGGCTTCCTCGGC
GGATATTGAACGGCTGATTTCGACGATCCGGTCGAGGGAGTCCTTGCCCA
ATTTGTTGACCGGCGCGGGGATGATGGCGGAGGAGCTAAAGCGAGGGGAA
GGCGACTAA
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Coding sequence (CDS) from alignment at chr10:616363..617771-

>NO10G02240.1 ID=NO10G02240.1|Name=NO10G02240.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr10:616363..617771- (Nannochloropsis oceanica)
ATGCCGCGCTCGGCATCGTCGCTTGTTGTGGCTCTGGCCGCCGTGCTCTT
TGCGCCACCATGCCCCTGCACCGGCTTCCTCTTGCCCACCAGTCCTTCAA
CATCGCGTTCGTCATCGTCCTCCAGCAGCAGCAGCAGCAGCGCACCGCGA
CTCACAGTCCCCTCAACACCACAAATCACCACCACTACACCGCATTCAAG
CTCAATCGACGGGGGACGAGGGGACAGCAAAGTAAAGCCATTGGATTGGC
TGGAAGAGGTGCGGCGGAAGAACTACGAGGTGCAGCAGCTACAAGAGACG
GAGGAAGGGGCGCGGCTGCGGAATCGCTTGAGTCGCATGAGCTTGGAAGG
CGGGTATCGTGTGGCACGGGCCATAAAGCGCAGCGCCAAGGACCAAGTCC
ATTTGATGAGCGTGGTGGCGGAGATCAAGCGCCGAACACCAACGGGCGCA
GAGACTCCGACTGAGGTTGCTGCCATTTCCGACGTGGGGTTGATTGCTCG
ACAGCTTGCTGATTGCGGTGCCGACGTCCTCCTTGTGACGACAGACGAGA
TATGTTACGGAGGCTCAGTGGAGGACCTACGAGCCGTCAAGGCAGCTTTT
GCCGATGTACCAGAGGGTGACAGGCCGCCCATCGTAGCTAAGGACATATA
CATCCACCCACTACAAATCGCCCAGGCCATTGACGCGGGGGCAGATGGCG
TACTCCTTATGGCTAGTTTGATGGGCGCCTCCCTTAACGAGCTCCTGGAC
GCCTGCACCTGCCTCGGTACCGAAGCCCTTGTTGAGGTCCACACAGTCGC
CGAGCTCGAAAAGGCCCTTGAACTAGGCGCCACCAACATCGTCGCCACCA
ACTGGGATCGGATCGAGAATGTGCTCTACCCCAATCAAGCGAAAGGGCTC
AAAGGGCTTATTCCTGATCTGATCGTGGCCATTGGCGCCGGTGGGGTGGG
AACAGTTCAGGATGCCGCAGAACTAGCGGACATGGGCTACGATGCTGCTG
TATTGGGAAGGGGTTTGGCTTCCTCGGCGGATATTGAACGGCTGATTTCG
ACGATCCGGTCGAGGGAGTCCTTGCCCAATTTGTTGACCGGCGCGGGGAT
GATGGCGGAGGAGCTAAAGCGAGGGGAAGGCGACTAA
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Synonyms
Publications