NO10G02230.1, NO10G02230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02230.1
Unique NameNO10G02230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr10:614027..616238 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:614027..616238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02230.1 vs.
Match: EWM25460.1 (fructose- -bisphosphatase [Nannochloropsis gaditana])

HSP 1 Score: 717.2 bits (1850), Expect = 3.400e-203
Identity = 356/409 (87.04%), Postives = 379/409 (92.67%), Query Frame = 0
Query:   43 VLSLTMMPFATTRAFVLPRYSPRLEQLLVRSATTIPQTPAAPSSTTNSRGQFPLIEPVFDEVCEMSGVTLTRYMMEVSRANPHLKEVESLMNSIQTACKTISSLVNRACITKMTGYQDDGCSINVQGEQQKKLDVLTNDVLKKALRFTGRLTVLASEEEDAPVTMEDRERIYADKRDSDVVVEEGNKYVACFDPLDGSSNVDASIPVGTIFGIFANGDEKECLLDDEDLEGGAMDPESRAAKCLMSTLQPGTNLVAAGYCLYSSSTHLVFTLGKGVNGFTYDTHIGEFVLTHPNIRIPERGQIYSFNEANRWDWDKPMQEYVTALQMGQGESGKRYSSRYIGSMVGDVHRTLLYGGIFGYPADANNKDGKLRLLYEAAPMAFLVEQAGGLALTGKNRIMEIRPRGVHQR 452
            +L L  +  +  R FV+PR   +  + +   ATTIP+TPA  S+ +N R Q+PLIEPVFDEVCEMSGVTLTRYMME+SRANPHLKE+ESLMNSIQTACKTISSLVNRACITKMTGYQDDGCSINVQGEQQKKLDVLTNDVLKKALRFTGRLTVLASEEED PV+MEDRERIYAD R+SDVV+EEGNKYVACFDPLDGSSNVDASIPVGTIFGIFA+G+E ECLLDDEDL+G  MDPESRAAKCLMSTLQPGTNLVAAGYCLYSSS HLVFTLG+GVNGFTYDTHIGEFVLTHPNIRIPERGQIYSFNEANRWDWD PMQEYVT+LQMGQG+SGKRYSSRYIGSMVGDVHRTLLYGGIFGYPADA N+DGKLRLLYEAAPMAFLVEQAGGLALTGKNRIMEIRPRGVHQR
Sbjct:   12 ILCLVALSSSACRGFVVPRSVSKHARSVQSRATTIPETPATSSTVSNQR-QYPLIEPVFDEVCEMSGVTLTRYMMEISRANPHLKEIESLMNSIQTACKTISSLVNRACITKMTGYQDDGCSINVQGEQQKKLDVLTNDVLKKALRFTGRLTVLASEEEDEPVSMEDRERIYADLRNSDVVLEEGNKYVACFDPLDGSSNVDASIPVGTIFGIFASGEETECLLDDEDLDGTPMDPESRAAKCLMSTLQPGTNLVAAGYCLYSSSAHLVFTLGRGVNGFTYDTHIGEFVLTHPNIRIPERGQIYSFNEANRWDWDSPMQEYVTSLQMGQGQSGKRYSSRYIGSMVGDVHRTLLYGGIFGYPADAQNRDGKLRLLYEAAPMAFLVEQAGGLALTGKNRIMEIRPRGVHQR 419          
The following BLAST results are available for this feature:
BLAST of NO10G02230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25460.13.400e-20387.04fructose- -bisphosphatase [Nannochloropsis gaditan... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02230NO10G02230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02230.1NO10G02230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02230.1.cds1NO10G02230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02230.1.cds2NO10G02230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02230.1.cds3NO10G02230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02230.1.cds4NO10G02230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02230.1.cds5NO10G02230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02230.1.cds6NO10G02230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02230.1 ID=NO10G02230.1|Name=NO10G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGTGCGTTCCGATCTTCTGCTTTTGGGAATTTGGCGAGGAAATGATCGC
GATTGAAGTGCGGCTTGGACCTCGGACCAAGCTCTGTCAAGTGGCGTCTG
CAAGGCCAACCATGCGAAGCTACGCGGTGCTTTCCCTCACCATGATGCCC
TTCGCCACGACAAGGGCATTTGTTTTACCTCGATACAGCCCTCGTCTCGA
GCAGCTGTTGGTCCGCAGTGCCACCACCATTCCGCAAACGCCAGCCGCTC
CTTCCTCGACGACAAACTCACGTGGTCAATTCCCTTTGATCGAACCAGTT
TTTGACGAAGTCTGCGAGATGAGCGGCGTGACTCTTACTCGATATATGAT
GGAAGTAAGCCGCGCCAATCCCCACCTCAAGGAGGTTGAGTCCTTGATGA
ACAGCATCCAAACGGCTTGTAAGACCATTTCCAGCCTGGTCAACCGCGCA
TGCATCACTAAAATGACCGGGTACCAAGACGATGGCTGCTCCATCAACGT
TCAAGGCGAGCAACAGAAGAAGCTCGATGTCCTGACGAATGATGTGCTCA
AGAAAGCACTCCGGTTCACAGGCAGGCTCACCGTGCTCGCCTCCGAAGAG
GAAGATGCGCCTGTCACCATGGAGGACCGCGAGCGGATCTATGCGGACAA
GCGCGATTCTGACGTGGTGGTGGAGGAGGGCAATAAATACGTCGCCTGCT
TCGATCCCTTGGATGGCAGCTCGAACGTTGACGCCTCAATCCCGGTCGGG
ACAATCTTTGGCATCTTCGCCAATGGCGATGAGAAGGAGTGTTTGCTCGA
TGATGAAGACTTGGAAGGAGGTGCCATGGATCCTGAATCCCGTGCGGCCA
AGTGTCTGATGAGCACGCTTCAGCCGGGAACGAATCTAGTGGCGGCAGGC
TATTGCCTATACAGTTCCTCGACCCATTTGGTGTTTACCCTCGGGAAAGG
CGTGAATGGTTTTACCTACGACACGCACATTGGCGAGTTCGTTTTGACGC
ACCCCAATATTCGGATTCCCGAACGAGGGCAGATATACAGCTTTAATGAA
GCGAATCGATGGGATTGGGATAAGCCCATGCAGGAATACGTCACCGCCCT
CCAAATGGGCCAGGGCGAATCGGGCAAACGCTATTCCTCGCGTTACATCG
GTTCCATGGTCGGGGACGTCCACCGCACCCTCCTCTACGGCGGCATTTTT
GGATACCCCGCTGACGCGAACAACAAAGACGGGAAACTCCGTCTGCTCTA
CGAGGCAGCACCAATGGCCTTCCTGGTCGAGCAAGCAGGAGGTTTGGCAT
TGACGGGGAAGAACCGAATCATGGAAATCAGGCCAAGAGGAGTCCATCAG
CGGGTGCCGTGTATTTTGGGGTCAAGGGAGGATGTAGAGGAATTGCGAAG
TTTTTACAACGCGAGCAAGGACCCGGATCTCATCCGTCGGTGCATTGAGC
GTTTGAATTCGGCGTCTTCATAA
back to top

protein sequence of NO10G02230.1

>NO10G02230.1-protein ID=NO10G02230.1-protein|Name=NO10G02230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MCVPIFCFWEFGEEMIAIEVRLGPRTKLCQVASARPTMRSYAVLSLTMMP
FATTRAFVLPRYSPRLEQLLVRSATTIPQTPAAPSSTTNSRGQFPLIEPV
FDEVCEMSGVTLTRYMMEVSRANPHLKEVESLMNSIQTACKTISSLVNRA
CITKMTGYQDDGCSINVQGEQQKKLDVLTNDVLKKALRFTGRLTVLASEE
EDAPVTMEDRERIYADKRDSDVVVEEGNKYVACFDPLDGSSNVDASIPVG
TIFGIFANGDEKECLLDDEDLEGGAMDPESRAAKCLMSTLQPGTNLVAAG
YCLYSSSTHLVFTLGKGVNGFTYDTHIGEFVLTHPNIRIPERGQIYSFNE
ANRWDWDKPMQEYVTALQMGQGESGKRYSSRYIGSMVGDVHRTLLYGGIF
GYPADANNKDGKLRLLYEAAPMAFLVEQAGGLALTGKNRIMEIRPRGVHQ
RVPCILGSREDVEELRSFYNASKDPDLIRRCIERLNSASS*
back to top

mRNA from alignment at chr10:614027..616238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02230.1 ID=NO10G02230.1|Name=NO10G02230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2212bp|location=Sequence derived from alignment at chr10:614027..616238- (Nannochloropsis oceanica)
ATGTGCGTTCCGATCTTCTGCTTTTGGGAATTTGGCGAGGAAATGATCGC GATTGAAGTGCGGCTTGGACCTCGGACCAAGCTCTGGTAAGCACTCCCTC CCACCCAAAAACACTCTCAATGTCCCTCACGTATACAGCAAGGTGCCCAG GACATGCTGGCTCTACTCAGCGCAACAATTCATGGCCTCACATTCTTGTC CAACCCCGCCCGTTCCTCACCCGCCTTCCCGCGTCACACACCATACGGCA TACATACAGTCAAGTGGCGTCTGCAAGGCCAACCATGCGAAGCTACGCGG TGCTTTCCCTCACCATGATGCCCTTCGCCACGACAAGGGCATTTGTTTTA CCTCGATACAGCCCTCGTCTCGAGCAGCTGTTGGTCCGCAGGTACGTCGT GTGCTCGTCGCCTTGCACATTTATATGGGGCATGTCCCGCGCATGCATTA TGTTCAGTCCCTAATTTGACGTGTCACAAATGCTTGTATGGTCGTCTCAA TCTTGTAGACGACCAAATATCTTCGCATTTTTCACCTTGCAAGGACCACT CATGGAACTTGACCACTCTACTCCCGTTTGCAGTGCCACCACCATTCCGC AAACGCCAGCCGCTCCTTCCTCGACGACAAACTCACGTGGTCAATTCCCT TTGATCGAACCAGTTTTTGACGAAGTCTGCGAGATGAGCGGCGTGACTCT TACTCGATATATGATGGAAGTAAGCCGCGCCAATCCCCACCTCAAGGAGG TTGAGTCCTTGATGAACAGCATCCAAACGGCTTGTAAGGTGCGTTACATG AGTGGGTTAAGGGTTGGGATGATTGCGACATCTTTTTGATCAGCAAGCTC TGTCTTTCATGTCGTCAAATCATATTGATCCCCATGCCCTCACAAACACC ATCGACCCACTCCATCCTCCATCACCCGCCACCCCTCACCCCTCAAAAGA CCATTTCCAGCCTGGTCAACCGCGCATGCATCACTAAAATGACCGGGTAC CAAGACGATGGCTGCTCCATCAACGTTCAAGGCGAGCAACAGAAGAAGCT CGATGTCCTGACGAATGATGTGCTCAAGAAAGCACTCCGGTTCACAGGCA GGCTCACCGTGCTCGCCTCCGAAGAGGAAGATGCGCCTGTCACCATGGAG GACCGCGAGCGGATCTATGCGGACAAGCGCGATTCTGACGTGGTGGTGGA GGAGGGCAATAAATACGTCGCCTGCTTCGATCCCTTGGATGGCAGCTCGA ACGTTGACGCCTCAATCCCGGTCGGGACAATCTTTGGCATCTTCGCCAAT GGCGATGAGAAGGAGTGTTTGCTCGATGATGAAGACTTGGAAGGAGGTGC CATGGATCCTGAATCCCGTGCGGCCAAGTGTCTGATGAGCACGCTTCAGC CGGGAACGAATCTAGTGGTACGGATTGGTGCCGTTTGTGGTGATGCGGTT AATACTTCTACATCGGCATTTTCTTCCTTCCCTTTCGCCCTCCCTTCTTC CTCCTTTCTCACGCATACATCTTATATTCTTCCCCTTCCCCTTCACTCAT GACCAGGCGGCAGGCTATTGCCTATACAGTTCCTCGACCCATTTGGTGTT TACCCTCGGGAAAGGCGTGAATGGTTTTACCTACGACACGCACATTGGCG AGTTCGTTTTGACGCACCCCAATATTCGGATTCCCGAACGAGGGCAGATA TACAGCTTTAATGAAGCGAATCGATGGGATTGGGATAAGCCCATGCAGGT AAGAATAGATCCAAATCTATCGGAAATCCAACGCATGTATGCTCCCTCTC TGATTCATCTCCCTCCCAATAGGAATACGTCACCGCCCTCCAAATGGGCC AGGGCGAATCGGGCAAACGCTATTCCTCGCGTTACATCGGTTCCATGGTC GGGGACGTCCACCGCACCCTCCTCTACGGCGGCATTTTTGGATACCCCGC TGACGCGAACAACAAAGACGGGAAACTCCGTCTGCTCTACGAGGCAGCAC CAATGGCCTTCCTGGTCGAGCAAGCAGGAGGTTTGGCATTGACGGGGAAG AACCGAATCATGGAAATCAGGCCAAGAGGAGTCCATCAGCGGGTGCCGTG TATTTTGGGGTCAAGGGAGGATGTAGAGGAATTGCGAAGTTTTTACAACG CGAGCAAGGACCCGGATCTCATCCGTCGGTGCATTGAGCGTTTGAATTCG GCGTCTTCATAA
back to top

Coding sequence (CDS) from alignment at chr10:614027..616238-

>NO10G02230.1 ID=NO10G02230.1|Name=NO10G02230.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr10:614027..616238- (Nannochloropsis oceanica)
ATGTGCGTTCCGATCTTCTGCTTTTGGGAATTTGGCGAGGAAATGATCGC
GATTGAAGTGCGGCTTGGACCTCGGACCAAGCTCTGTCAAGTGGCGTCTG
CAAGGCCAACCATGCGAAGCTACGCGGTGCTTTCCCTCACCATGATGCCC
TTCGCCACGACAAGGGCATTTGTTTTACCTCGATACAGCCCTCGTCTCGA
GCAGCTGTTGGTCCGCAGTGCCACCACCATTCCGCAAACGCCAGCCGCTC
CTTCCTCGACGACAAACTCACGTGGTCAATTCCCTTTGATCGAACCAGTT
TTTGACGAAGTCTGCGAGATGAGCGGCGTGACTCTTACTCGATATATGAT
GGAAGTAAGCCGCGCCAATCCCCACCTCAAGGAGGTTGAGTCCTTGATGA
ACAGCATCCAAACGGCTTGTAAGACCATTTCCAGCCTGGTCAACCGCGCA
TGCATCACTAAAATGACCGGGTACCAAGACGATGGCTGCTCCATCAACGT
TCAAGGCGAGCAACAGAAGAAGCTCGATGTCCTGACGAATGATGTGCTCA
AGAAAGCACTCCGGTTCACAGGCAGGCTCACCGTGCTCGCCTCCGAAGAG
GAAGATGCGCCTGTCACCATGGAGGACCGCGAGCGGATCTATGCGGACAA
GCGCGATTCTGACGTGGTGGTGGAGGAGGGCAATAAATACGTCGCCTGCT
TCGATCCCTTGGATGGCAGCTCGAACGTTGACGCCTCAATCCCGGTCGGG
ACAATCTTTGGCATCTTCGCCAATGGCGATGAGAAGGAGTGTTTGCTCGA
TGATGAAGACTTGGAAGGAGGTGCCATGGATCCTGAATCCCGTGCGGCCA
AGTGTCTGATGAGCACGCTTCAGCCGGGAACGAATCTAGTGGCGGCAGGC
TATTGCCTATACAGTTCCTCGACCCATTTGGTGTTTACCCTCGGGAAAGG
CGTGAATGGTTTTACCTACGACACGCACATTGGCGAGTTCGTTTTGACGC
ACCCCAATATTCGGATTCCCGAACGAGGGCAGATATACAGCTTTAATGAA
GCGAATCGATGGGATTGGGATAAGCCCATGCAGGAATACGTCACCGCCCT
CCAAATGGGCCAGGGCGAATCGGGCAAACGCTATTCCTCGCGTTACATCG
GTTCCATGGTCGGGGACGTCCACCGCACCCTCCTCTACGGCGGCATTTTT
GGATACCCCGCTGACGCGAACAACAAAGACGGGAAACTCCGTCTGCTCTA
CGAGGCAGCACCAATGGCCTTCCTGGTCGAGCAAGCAGGAGGTTTGGCAT
TGACGGGGAAGAACCGAATCATGGAAATCAGGCCAAGAGGAGTCCATCAG
CGGGTGCCGTGTATTTTGGGGTCAAGGGAGGATGTAGAGGAATTGCGAAG
TTTTTACAACGCGAGCAAGGACCCGGATCTCATCCGTCGGTGCATTGAGC
GTTTGAATTCGGCGTCTTCATAA
back to top
Synonyms
Publications