|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr10 | genome | chr10:602360..605531 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02200.3 vs.
Match: EWM25364.1 (fumarylacetoacetate hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 901.4 bits (2328), Expect = 1.400e-258 Identity = 431/536 (80.41%), Postives = 474/536 (88.43%), Query Frame = 0
Query: 5 DDSAECYLDIRPDHDFSYQNLPYGVFSTPHTAPRVGVAIGDWVLDLSVLAEETDVFSFDASCFHEPALNAFMAQPRAVWTTARATIQRLLSKTEPVLQDNAALRARALLPMDTVLMHLPAEIGDYTDFYSSREHATNVGIMFRGKENALQPNWLHLPVGYHGRASSVVVSGTPVVRPQGQLQADPTDEKKGSNYGPCRLLDFELEIGAFVGGAPNPLGRPLTMAEADDHLFGLVLMNDWSARDIQKWEYVPLGPFTAKNFATSISPWVVTLDALRPFLCPTSAGTQDNPVPLPYLQDPSYASYDIQLEVGLQTPALAAPHTISRSNFRHLYWTIKQQLVHHSVTGCNLRPGDLLGSGTISGSNDTALGSMLELSWKGTRDVTLSDGSTRKFLQDGDTVVLKGWSQGQNFRVGFGECAGRILPVGA------GPEMAAVETAGAWREGRRWGGLKLHGYWRSSATWRVRIALEWKGLEYEYVPVHLVEGAQKSEAYVALNPQAQVPTLEVRDLATGQTVMLTQSLPIIEFLDEAFPQ 535
++ AEC+LDI+PDHDFSY NLPYGVFST H+APRVGVAIGDWVLDLSVLA ETD+FSFDASCFHE ALNAFMAQPRAVWT+ARA I+++LSK EP+LQ++AALRAR LLP V MHLPA IGDYTDFYSSREHATNVGIMFRGKENALQPNWLHLPVGYHGRASSVV+SGTPV+RPQGQLQAD D+KKGS YGP RLLDFE+E+GAFVGGAPNPLG+PLTMAEAD+HLFGLVLMNDWSARDIQKWEYVPLGPFTAKNFATSISPWVVTLDALRPFLCPTSA TQDNPVPLPYL+DP YASYDI LEV LQ+ L PH ISRSNFRHLYWTI+QQLVHHSVTGCNLRPGDLLGSGTISG++D++LGS+LELSWKG+R+V + DGSTRKFL+DGD+VVL+GWSQG++FRVGFG C GR+LP G PE V R+GGL+LHGYWRSSATWRVRIALEWKGLEYEYVPVHLVEG Q S AY ALNP QVPT E+ DLATG+ V+LTQSL IIEFLDEAFP+
Sbjct: 8 EEEAECFLDIKPDHDFSYHNLPYGVFSTAHSAPRVGVAIGDWVLDLSVLASETDIFSFDASCFHEAALNAFMAQPRAVWTSARAAIRQVLSKGEPLLQEDAALRARTLLPFHNVKMHLPARIGDYTDFYSSREHATNVGIMFRGKENALQPNWLHLPVGYHGRASSVVISGTPVIRPQGQLQADSIDDKKGSIYGPSRLLDFEMEVGAFVGGAPNPLGQPLTMAEADEHLFGLVLMNDWSARDIQKWEYVPLGPFTAKNFATSISPWVVTLDALRPFLCPTSACTQDNPVPLPYLRDPDYASYDIHLEVSLQSAGLPFPHPISRSNFRHLYWTIRQQLVHHSVTGCNLRPGDLLGSGTISGTDDSSLGSLLELSWKGSREVEVGDGSTRKFLRDGDSVVLRGWSQGKDFRVGFGVCEGRVLPAGTKVSSLLAPEGPPV----------RYGGLRLHGYWRSSATWRVRIALEWKGLEYEYVPVHLVEGEQNSSAYAALNPLGQVPTFEICDLATGRKVVLTQSLAIIEFLDEAFPE 533
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02200.3 ID=NO10G02200.3|Name=NO10G02200.3|organism=Nannochloropsis oceanica|type=mRNA|length=2556bp
CACTAGATTTGACTTTCTCGCTCGCTGTCGTTCTGTCTGGTAATCTCGCC
CTGGTGTCAAGCCAAAGGCGCGATCATGACGCCCACGGACGACTCTGCGG
AATGCTACCTTGATATAAGGCCCGACCACGACTTCTCCTACCAAAACTTG
CCGTACGGCGTCTTCTCGACGCCCCATACGGCACCACGCGTGGGCGTGGC
TATCGGTGACTGGGTGCTGGACTTGTCTGTGTTGGCGGAGGAGACGGATG
TCTTCAGTTTCGATGCCAGCTGCTTCCACGAGCCGGCACTCAACGCCTTC
ATGGCCCAGCCTCGCGCCGTTTGGACCACTGCACGCGCCACGATTCAGCG
CCTGCTCTCCAAGACAGAGCCCGTACTCCAAGACAATGCGGCCTTGCGCG
CCCGCGCCCTCCTGCCGATGGACACAGTGCTGATGCACTTGCCGGCCGAA
ATTGGGGATTACACGGATTTCTACTCCTCCCGGGAGCATGCCACTAATGT
GGGGATCATGTTTCGTGGGAAGGAAAATGCGCTGCAGCCAAACTGGCTCC
ACCTCCCCGTTGGGTACCATGGCCGGGCATCAAGCGTCGTCGTCTCCGGC
ACGCCTGTCGTTCGGCCCCAAGGGCAATTACAAGCTGATCCCACTGATGA
GAAAAAAGGCTCCAACTACGGTCCCTGTCGCCTTCTCGACTTCGAGCTCG
AAATCGGCGCTTTCGTCGGTGGCGCCCCCAACCCCCTCGGGCGTCCATTG
ACCATGGCCGAAGCCGACGACCACCTCTTCGGCTTGGTTCTCATGAATGA
CTGGTCCGCCCGGGACATCCAAAAATGGGAATACGTCCCCCTCGGACCCT
TCACTGCAAAGAATTTTGCCACGTCAATCAGCCCTTGGGTGGTAACTCTC
GATGCCCTCCGCCCTTTCCTCTGCCCCACCAGCGCGGGCACCCAGGACAA
CCCTGTCCCTCTCCCTTACCTCCAGGATCCTTCGTATGCGTCGTATGATA
TTCAGCTAGAAGTTGGGCTGCAGACCCCGGCGCTTGCTGCACCTCACACG
ATCTCTCGGTCGAATTTTAGGCATCTGTACTGGACGATCAAGCAGCAGTT
GGTGCATCATTCCGTGACCGGGTGCAACCTCCGCCCCGGCGACCTGCTTG
GAAGTGGTACCATCAGCGGGAGCAACGACACAGCCTTGGGATCGATGCTG
GAATTGAGCTGGAAGGGCACAAGAGACGTCACGTTGAGTGACGGGTCGAC
TAGAAAATTCTTGCAGGACGGAGATACAGTCGTGTTGAAGGGCTGGAGTC
AGGGGCAGAACTTCCGGGTCGGGTTTGGGGAGTGTGCCGGGAGAATACTG
CCAGTTGGGGCAGGCCCAGAGATGGCTGCGGTGGAAACGGCGGGGGCATG
GAGGGAGGGAAGGAGGTGGGGGGGGTTGAAATTGCATGGGTATTGGCGGT
CGTCGGCGACGTGGAGAGTCAGGATAGCGTTGGAGTGGAAGGGGTTGGAG
TATGAGTACGTGCCGGTGCATTTGGTCGAGGGGGCGCAGAAGTCGGAGGC
GTATGTCGCCTTGAATCCTCAGGCGCAGGTCCCGACGCTGGAGGTGCGGG
ATTTGGCCACGGGGCAGACGGTAATGCTGACGCAGAGCTTGCCCATCATC
GAGTTCTTGGACGAGGCCTTCCCGCAGGTAGGTGTGAGAGAGATTACAGT
CTTTTGCTTCTTGTTGTGCTTCATTTTAGTTTGATGAAAACGATGGTGGC
GGTTGTGAAAGTGAGTGGGGCAATGTGCTCGCTGCTGCTGCTTCAGTAGC
AACTGCCTTTTCGTCCTGTGATAGCGCTGGAGGGATCGTTTGAGAAGGAA
GGACTCTCAATTCTAGTCATTTACTTGCCTTCTCCACCGTATACCGAAAT
CACTACACTTGTACTCACACTTGCCTTCCCAGACCAAGTCTATGCTCCCC
AAGGGTGGACCAGACGCCGTATTGAAGCGAGCGCAGGTGCGACGTGTGGC
CGAGATGGTGAATTCGGGCATCCAGCCTCTGCAGAACCTCTCTCCGATGG
CACAGATTACGGCGGAGTCCGGTGGGGCTTATGATGGGAAGGCGTTTGGG
AAGGATGCGATCGTCAAGTACGTATATGGTAGATACACAAGGAGCGACAA
GGACAGTCCATATGCCTGTGTATAGAATGACTTGCACCATGCTTCCTCAT
CAGTTATATTTGTTGGGGATAAGCGTGACTTTGAAATCTACTAGACATCC
CACCGTCAAAACTCATTGATCCTTTTCCCCCATCCTCCCCTTCCTTTGTT
GTAGGGGTCTGGCAGCCATGGAAACGGTGGTCAAACCCCTCGCAGGCAAA
TACTGCGTGGGCAATAATGTGTCTCTCGCTGATGCTGCCTTGGTGCCTCA
GCTTTATAATGCCCGGCGCTTCGGCGTGGATTTATCTGCTTATCCTTCTT
TGCTTCGGATCGAAGAGGCGTTGGTGTCCTTTCCTGCTTTTCAGAGGGCG
CATGCGGACGCGCAAGAGGATGCGGTCAAGTCAAAAGGGTGAAAAAAAGG
GGGGGG back to topprotein sequence of NO10G02200.3 >NO10G02200.3-protein ID=NO10G02200.3-protein|Name=NO10G02200.3|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MTPTDDSAECYLDIRPDHDFSYQNLPYGVFSTPHTAPRVGVAIGDWVLDL
SVLAEETDVFSFDASCFHEPALNAFMAQPRAVWTTARATIQRLLSKTEPV
LQDNAALRARALLPMDTVLMHLPAEIGDYTDFYSSREHATNVGIMFRGKE
NALQPNWLHLPVGYHGRASSVVVSGTPVVRPQGQLQADPTDEKKGSNYGP
CRLLDFELEIGAFVGGAPNPLGRPLTMAEADDHLFGLVLMNDWSARDIQK
WEYVPLGPFTAKNFATSISPWVVTLDALRPFLCPTSAGTQDNPVPLPYLQ
DPSYASYDIQLEVGLQTPALAAPHTISRSNFRHLYWTIKQQLVHHSVTGC
NLRPGDLLGSGTISGSNDTALGSMLELSWKGTRDVTLSDGSTRKFLQDGD
TVVLKGWSQGQNFRVGFGECAGRILPVGAGPEMAAVETAGAWREGRRWGG
LKLHGYWRSSATWRVRIALEWKGLEYEYVPVHLVEGAQKSEAYVALNPQA
QVPTLEVRDLATGQTVMLTQSLPIIEFLDEAFPQVGVREITVFCFLLCFI
LV* back to topmRNA from alignment at chr10:602360..605531- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02200.3 ID=NO10G02200.3|Name=NO10G02200.3|organism=Nannochloropsis oceanica|type=mRNA|length=3172bp|location=Sequence derived from alignment at chr10:602360..605531- (Nannochloropsis oceanica)
CACTAGATTTGACTTTCTCGCTCGCTGTCGTTCTGTCTGGTAATCTCGCC
CTGGTGTCAAGCCAAAGGCGCGATCATGACGCCCACGGACGACTCTGCGG
AATGCTACCTTGATATAAGGCCCGACCACGACTTCTCCTACCAAAACTTG
CCGTACGGCGTCTTCTCGACGCCCCATACGGCACCACGCGTGGGCGTGGC
TATCGGTGACTGGGTGCTGGACTTGTCTGTGTTGGCGGAGGAGACGGATG
TCTTCAGGTGCGTTGGTTGGAATGAGCAGGGAGGGGGAGGTGGTGGGAGG
TTTCCTTTTTCCTTCTTCCCCACATGCATGTGTCAAAGCCGCACAAGCCT
CATGATGATTCAATCTGTCCGTGGGGTTGTGATGAATTATGCGGTACAGT
CTCGGCCTGCTTCGGCGCGTGCCATGAGAAGCTCTCCCCGTGGGTAAACT
GAAATACCGAGCCAAGACAAGTAACCAACCTGCACATCTCCCCTCCCACT
TTATCCTCCCTCCACCACCAGTTTCGATGCCAGCTGCTTCCACGAGCCGG
CACTCAACGCCTTCATGGCCCAGCCTCGCGCCGTTTGGACCACTGCACGC
GCCACGATTCAGCGCCTGCTCTCCAAGACAGAGCCCGTACTCCAAGACAA
TGCGGCCTTGCGCGCCCGCGCCCTCCTGCCGATGGACACAGTGCTGATGC
ACTTGCCGGCCGAAATTGGGGATTACACGGATTTCTACTCCTCCCGGGAG
CATGCCACTAATGTGGGGATCATGTTTCGTGGGAAGGAAAATGCGCTGCA
GCCAAACTGGCTCCACCTCCCCGTTGGGTACCATGGCCGGGCATCAAGCG
TCGTCGTCTCCGGCACGCCTGTCGTTCGGCCCCAAGGGCAATTACAAGCT
GATCCCACTGATGAGGTACATCCGTTGTGCGTCTAGCTTGTTGGCTTTTT
GGGAGTGCCTGAGCTGTCTCGCTTGCTGTCCCTCGTGTCAATTTCTCGCA
CGCATGCCTCTCGCTCTCAGTCCCCTCGCTTCCTCACTCATCCACCAAAC
TCCTCCACCCCAACCCCCAACACTATAAAAACAGAAAAAAGGCTCCAACT
ACGGTCCCTGTCGCCTTCTCGACTTCGAGCTCGAAATCGGCGCTTTCGTC
GGTGGCGCCCCCAACCCCCTCGGGCGTCCATTGACCATGGCCGAAGCCGA
CGACCACCTCTTCGGCTTGGTTCTCATGAATGACTGGTCCGCCCGGGACA
TCCAAAAATGGGAATACGTCCCCCTCGGACCCTTCACTGCAAAGAATTTT
GCCACGTCAATCAGCCCTTGGGTGGTAACTCTCGATGCCCTCCGCCCTTT
CCTCTGCCCCACCAGCGCGGGCACCCAGGACAACCCTGTCCCTCTCCCTT
ACCTCCAGGATCCTTCGTATGCGTCGTATGATATTCAGCTAGAAGTTGGG
CTGCAGACCCCGGCGCTTGCTGCACCTCACACGATCTCTCGGTCGAATTT
TAGGCATCTGTACTGGACGATCAAGCAGCAGTTGGTGCATCATTCCGTGA
CCGGGTGCAACCTCCGCCCCGGCGACCTGCTTGGAAGTGGTACCATCAGC
GGGAGCAACGACACAGCCTTGGGATCGATGCTGGAATTGAGCTGGAAGGG
CACAAGAGACGTCACGTTGAGTGACGGGTCGACTAGAAAATTCTTGCAGG
ACGGAGATACAGTCGTGTTGAAGGGCTGGAGTCAGGGGCAGAACTTCCGG
GTCGGGTTTGGGGAGTGTGCCGGGAGAATACTGCCAGTTGGGGCAGGCCC
AGAGATGGCTGCGGTGGAAACGGCGGGGGCATGGAGGGAGGGAAGGAGGT
GGGGGGGGTTGAAATTGCATGGGTATTGGCGGTCGTCGGCGACGTGGAGA
GTCAGGATAGCGTTGGAGTGGAAGGGGTTGGAGTATGAGTACGTGCCGGT
GCATTTGGTCGAGGGGGCGCAGAAGTCGGAGGCGTAAGTAATATGTTGGG
GGAGAGAGGGAGAGATGAAGCTTTGGGGTGGGAGTGGTTTTGCGTGTCTC
TTCGTGTATCCGTCCGTGTATATATAGAGCTATAAAGCTATTCATTTATT
TGTTCCTTCATTTATTGACTCTATTTTCTACAAACTCATGAAAAACTTCT
TCCTTCTCGACGACAGGTATGTCGCCTTGAATCCTCAGGCGCAGGTCCCG
ACGCTGGAGGTGCGGGATTTGGCCACGGGGCAGACGGTAATGCTGACGCA
GAGCTTGCCCATCATCGAGTTCTTGGACGAGGCCTTCCCGCAGGTAGGTG
TGAGAGAGATTACAGTCTTTTGCTTCTTGTTGTGCTTCATTTTAGTTTGA
TGAAAACGATGGTGGCGGTTGTGAAAGTGAGTGGGGCAATGTGCTCGCTG
CTGCTGCTTCAGTAGCAACTGCCTTTTCGTCCTGTGATAGCGCTGGAGGG
ATCGTTTGAGAAGGAAGGACTCTCAATTCTAGTCATTTACTTGCCTTCTC
CACCGTATACCGAAATCACTACACTTGTACTCACACTTGCCTTCCCAGAC
CAAGTCTATGCTCCCCAAGGGTGGACCAGACGCCGTATTGAAGCGAGCGC
AGGTGCGACGTGTGGCCGAGATGGTGAATTCGGGCATCCAGCCTCTGCAG
AACCTCTCTCCGATGGCACAGATTACGGCGGAGTCCGGTGGGGCTTATGA
TGGGAAGGCGTTTGGGAAGGATGCGATCGTCAAGTACGTATATGGTAGAT
ACACAAGGAGCGACAAGGACAGTCCATATGCCTGTGTATAGAATGACTTG
CACCATGCTTCCTCATCAGTTATATTTGTTGGGGATAAGCGTGACTTTGA
AATCTACTAGACATCCCACCGTCAAAACTCATTGATCCTTTTCCCCCATC
CTCCCCTTCCTTTGTTGTAGGGGTCTGGCAGCCATGGAAACGGTGGTCAA
ACCCCTCGCAGGCAAATACTGCGTGGGCAATAATGTGTCTCTCGCTGATG
CTGCCTTGGTGCCTCAGCTTTATAATGCCCGGCGCTTCGGCGTGGATTTA
TCTGCTTATCCTTCTTTGCTTCGGATCGAAGAGGCGTTGGTGTCCTTTCC
TGCTTTTCAGAGGGCGCATGCGGACGCGCAAGAGGATGCGGTCAAGTCAA
AAGGGTGAAAAAAAGGGGGGGG back to topCoding sequence (CDS) from alignment at chr10:602360..605531- >NO10G02200.3 ID=NO10G02200.3|Name=NO10G02200.3|organism=Nannochloropsis oceanica|type=CDS|length=1659bp|location=Sequence derived from alignment at chr10:602360..605531- (Nannochloropsis oceanica)
ATGACGCCCACGGACGACTCTGCGGAATGCTACCTTGATATAAGGCCCGA
CCACGACTTCTCCTACCAAAACTTGCCGTACGGCGTCTTCTCGACGCCCC
ATACGGCACCACGCGTGGGCGTGGCTATCGGTGACTGGGTGCTGGACTTG
TCTGTGTTGGCGGAGGAGACGGATGTCTTCAGTTTCGATGCCAGCTGCTT
CCACGAGCCGGCACTCAACGCCTTCATGGCCCAGCCTCGCGCCGTTTGGA
CCACTGCACGCGCCACGATTCAGCGCCTGCTCTCCAAGACAGAGCCCGTA
CTCCAAGACAATGCGGCCTTGCGCGCCCGCGCCCTCCTGCCGATGGACAC
AGTGCTGATGCACTTGCCGGCCGAAATTGGGGATTACACGGATTTCTACT
CCTCCCGGGAGCATGCCACTAATGTGGGGATCATGTTTCGTGGGAAGGAA
AATGCGCTGCAGCCAAACTGGCTCCACCTCCCCGTTGGGTACCATGGCCG
GGCATCAAGCGTCGTCGTCTCCGGCACGCCTGTCGTTCGGCCCCAAGGGC
AATTACAAGCTGATCCCACTGATGAGAAAAAAGGCTCCAACTACGGTCCC
TGTCGCCTTCTCGACTTCGAGCTCGAAATCGGCGCTTTCGTCGGTGGCGC
CCCCAACCCCCTCGGGCGTCCATTGACCATGGCCGAAGCCGACGACCACC
TCTTCGGCTTGGTTCTCATGAATGACTGGTCCGCCCGGGACATCCAAAAA
TGGGAATACGTCCCCCTCGGACCCTTCACTGCAAAGAATTTTGCCACGTC
AATCAGCCCTTGGGTGGTAACTCTCGATGCCCTCCGCCCTTTCCTCTGCC
CCACCAGCGCGGGCACCCAGGACAACCCTGTCCCTCTCCCTTACCTCCAG
GATCCTTCGTATGCGTCGTATGATATTCAGCTAGAAGTTGGGCTGCAGAC
CCCGGCGCTTGCTGCACCTCACACGATCTCTCGGTCGAATTTTAGGCATC
TGTACTGGACGATCAAGCAGCAGTTGGTGCATCATTCCGTGACCGGGTGC
AACCTCCGCCCCGGCGACCTGCTTGGAAGTGGTACCATCAGCGGGAGCAA
CGACACAGCCTTGGGATCGATGCTGGAATTGAGCTGGAAGGGCACAAGAG
ACGTCACGTTGAGTGACGGGTCGACTAGAAAATTCTTGCAGGACGGAGAT
ACAGTCGTGTTGAAGGGCTGGAGTCAGGGGCAGAACTTCCGGGTCGGGTT
TGGGGAGTGTGCCGGGAGAATACTGCCAGTTGGGGCAGGCCCAGAGATGG
CTGCGGTGGAAACGGCGGGGGCATGGAGGGAGGGAAGGAGGTGGGGGGGG
TTGAAATTGCATGGGTATTGGCGGTCGTCGGCGACGTGGAGAGTCAGGAT
AGCGTTGGAGTGGAAGGGGTTGGAGTATGAGTACGTGCCGGTGCATTTGG
TCGAGGGGGCGCAGAAGTCGGAGGCGTATGTCGCCTTGAATCCTCAGGCG
CAGGTCCCGACGCTGGAGGTGCGGGATTTGGCCACGGGGCAGACGGTAAT
GCTGACGCAGAGCTTGCCCATCATCGAGTTCTTGGACGAGGCCTTCCCGC
AGGTAGGTGTGAGAGAGATTACAGTCTTTTGCTTCTTGTTGTGCTTCATT
TTAGTTTGA back to top
|