NO10G02100.3, NO10G02100.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02100.3
Unique NameNO10G02100.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length993
Alignment locationchr10:578269..579914 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:578269..579914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02100.3 vs.
Match: EWM25354.1 (lycopene beta cyclase [Nannochloropsis gaditana])

HSP 1 Score: 284.6 bits (727), Expect = 2.500e-73
Identity = 145/166 (87.35%), Postives = 156/166 (93.98%), Query Frame = 0 
Query:   49 KDKYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPGEKLDDISPDLLLECASLVKANSIEGCKKKEVQVVYTRWRNLKKTKSMEAGQIGFHDQSKVRKIKVEKCNSIVNALNRTKEERFPDLQAEQEVRAAEYRAVQKSLKRGQEREEREERKRQEEEAKLRSYE 215
            KDKYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPG+KLDDIS DLL EC+SLVKANSIEGCK KEV+VVYTRWRNLKKTKSMEAGQIGFHD SKVR IKV+KCNSIVNALN+TKEER+PDLQAEQE RA EYRA QK+ KR QE++EREE+KR+EEEAKLRSYE
Sbjct:   68 KDKYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPGQKLDDISSDLLHECSSLVKANSIEGCKMKEVKVVYTRWRNLKKTKSMEAGQIGFHDPSKVRTIKVQKCNSIVNALNKTKEERYPDLQAEQEARAVEYRAAQKASKRDQEKQEREEKKRREEEAKLRSYE 233
The following BLAST results are available for this feature:
BLAST of NO10G02100.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25354.12.500e-7387.35lycopene beta cyclase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02100NO10G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02100.3NO10G02100.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02100.3.cds1NO10G02100.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02100.3.cds2NO10G02100.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02100.3.cds3NO10G02100.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02100.3.cds4NO10G02100.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02100.3.cds5NO10G02100.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02100.3.cds6NO10G02100.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02100.3.cds7NO10G02100.3.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02100.3 ID=NO10G02100.3|Name=NO10G02100.3|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ATGCCCTCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGC
AGGGCTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCA
TGTACTTCTTTACGAGTAGCGAGGGCTACGTGTTGTACATGGGGAAAGAC
AAGTATGAAAACGAGGAGCTGATTCGTTTTGGACTTCCAGAAGACGTGTG
GTTTCACGTTGATGACTTGTCTTCAGCGCACGTATACTTGCGGCAGAAGC
CGGGGGAAAAGCTAGATGATATAAGTCCCGACTTGCTACTGGAGTGTGCC
TCCCTCGTCAAGGCCAATTCGATCGAGGGCTGCAAAAAGAAGGAAGTGCA
GGTGGTATACACGAGGTGGCGAAATCTGAAGAAGACCAAGAGCATGGAGG
CGGGCCAGATCGGCTTTCATGACCAAAGCAAGGTTCGAAAAATTAAAGTC
GAGAAATGCAACTCTATCGTGAATGCCCTCAATAGGACCAAAGAGGAACG
TTTCCCTGACCTGCAAGCGGAGCAAGAAGTCCGGGCAGCTGAGTACCGGG
CAGTGCAAAAAAGCTTGAAGCGAGGGCAGGAAAGAGAGGAAAGAGAAGAG
AGAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGTAAGTGCG
AGTGGATTATGTTGGGCGAGGGGATGAACTGGAGAGGGGATTTTAGCCTT
TACCGGGATGACATTTTCTTCTTTCGCTTACCAAGTATCTTGTCAATTCT
CAGGAGCTTGATGAAGGACGACAGGATGGAATCCAACAAGAAGAACGTGG
CGGACGTGGCAGAGTTGGAGGAAGACTTTATGTAAGAATATCGAGTGGGT
AGAAAGGAAAAGGCTGGTGAAGATAAAATATGAAAAGTATTCGCAAAACT
GATGCTGGGAATCGTGACTTTTGTTTCTTTTGCTGGTGGTCACTTGAAAC
GGGTGTTGTTGAAAAGGATGGGGATGTTGCTTCGATTATTTTT
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protein sequence of NO10G02100.3

>NO10G02100.3-protein ID=NO10G02100.3-protein|Name=NO10G02100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MPSILPPTPSIGPHVTAGLFSRGSGNSSCSTGSMYFFTSSEGYVLYMGKD
KYENEELIRFGLPEDVWFHVDDLSSAHVYLRQKPGEKLDDISPDLLLECA
SLVKANSIEGCKKKEVQVVYTRWRNLKKTKSMEAGQIGFHDQSKVRKIKV
EKCNSIVNALNRTKEERFPDLQAEQEVRAAEYRAVQKSLKRGQEREEREE
RKRQEEEAKLRSYE*
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mRNA from alignment at chr10:578269..579914+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02100.3 ID=NO10G02100.3|Name=NO10G02100.3|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at chr10:578269..579914+ (Nannochloropsis oceanica)
ATGCCCTCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGC
AGGGCTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCA
TGTACTTCTTTACGAGTAGCGGTAAGTGCCTCCTATTCATCGTGGGTTTG
TGTGTGGCTGCCGGACTTATGGTCTCATTTCATGTCCACATCACTTTCCA
ACTCGCGCATCCCATCCTCGTCTTCGTCCATTCGGTGCACCATACAGAGG
GCTACGTGTTGTACATGGGGGTAAGTCATGAAGGCAAAGAAGAAAAAGTC
GTGAATGGGATTGTGATTCCTTTGAGCGGCTCGTGGCATCTTATTGTCTA
CATGCCTAAGTGATCCCTCCTCCCTCGTTCCCTCGTTTCCCACCCATGGT
TTTGACAGAAAGACAAGTATGAAAACGAGGAGCTGATTCGTTTTGGACTT
CCAGAAGACGTGTGGTTTCACGTTGATGACTTGTCTTCAGCGCACGTATA
CTTGCGGCAGAAGCCGGGGGAAAAGCTAGATGATATAAGTCCCGACTTGC
TACTGGAGTGTGCCTCCCTCGTCAAGGTACGCGACCCTCATACACGCGTA
AAGAAAAAGACGGGATGACTACGAGGCAATGTGAGAAGAAAAAATTCATT
AGTAGCTTTCCAAATCGCCTCATCTCGCAATATTTTGTCAGTATAGGCCA
ATTCGATCGAGGGCTGCAAAAAGAAGGAAGTGCAGGTGGTATACACGAGG
TGGCGAAATCTGAAGAAGACCAAGAGCATGGAGGCGGGCCAGATCGGCTT
TCATGACCAAAGCAAGGTGATATTTGGTTACTTGTGTATGCAAACGTATG
TGTAAGTGGCCACCATTTCACTTACATGTACTCTCATCCTTTTTTGGAGG
GCAGGTTCGAAAAATTAAAGTCGAGAAATGCAACTCTATCGTGAATGCCC
TCAATAGGACCAAAGAGGTAAGCCACATGTGATTTTCAATTAAATTGCTT
TCTAGATTCCGAGTGAGATCACTAATCACACATCCACAAAAAAAACTCAC
GCCCTTGGATTTAATTCCTCGCAAAGGAACGTTTCCCTGACCTGCAAGCG
GAGCAAGAAGTCCGGGCAGCTGAGTACCGGGCAGTGCAAAAAAGCTTGAA
GCGAGGGCAGGAAAGAGAGGTAAAAGCACAGGAAAATTTCGAATATAAGA
AGATATGATTTTTACTCCTTCTTATGTCACACATTCAATAGGAAAGAGAA
GAGAGAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGTAAGT
GCGAGTGGATTATGTTGGGCGAGGGGATGAACTGGAGAGGGGATTTTAGC
CTTTACCGGGATGACATTTTCTTCTTTCGCTTACCAAGTATCTTGTCAAT
TCTCAGGAGCTTGATGAAGGACGACAGGATGGAATCCAACAAGAAGAACG
TGGCGGACGTGGCAGAGTTGGAGGAAGACTTTATGTAAGAATATCGAGTG
GGTAGAAAGGAAAAGGCTGGTGAAGATAAAATATGAAAAGTATTCGCAAA
ACTGATGCTGGGAATCGTGACTTTTGTTTCTTTTGCTGGTGGTCACTTGA
AACGGGTGTTGTTGAAAAGGATGGGGATGTTGCTTCGATTATTTTT
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Coding sequence (CDS) from alignment at chr10:578269..579914+

>NO10G02100.3 ID=NO10G02100.3|Name=NO10G02100.3|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at chr10:578269..579914+ (Nannochloropsis oceanica)
ATGCCCTCAATCCTCCCCCCCACCCCCTCTATCGGCCCCCACGTCACGGC
AGGGCTCTTCAGCAGGGGCAGCGGAAACAGCAGCTGCAGTACTGGCAGCA
TGTACTTCTTTACGAGTAGCGAGGGCTACGTGTTGTACATGGGGAAAGAC
AAGTATGAAAACGAGGAGCTGATTCGTTTTGGACTTCCAGAAGACGTGTG
GTTTCACGTTGATGACTTGTCTTCAGCGCACGTATACTTGCGGCAGAAGC
CGGGGGAAAAGCTAGATGATATAAGTCCCGACTTGCTACTGGAGTGTGCC
TCCCTCGTCAAGGCCAATTCGATCGAGGGCTGCAAAAAGAAGGAAGTGCA
GGTGGTATACACGAGGTGGCGAAATCTGAAGAAGACCAAGAGCATGGAGG
CGGGCCAGATCGGCTTTCATGACCAAAGCAAGGTTCGAAAAATTAAAGTC
GAGAAATGCAACTCTATCGTGAATGCCCTCAATAGGACCAAAGAGGAACG
TTTCCCTGACCTGCAAGCGGAGCAAGAAGTCCGGGCAGCTGAGTACCGGG
CAGTGCAAAAAAGCTTGAAGCGAGGGCAGGAAAGAGAGGAAAGAGAAGAG
AGAAAAAGGCAGGAGGAGGAGGCCAAGCTGCGAAGCTACGAGTAA
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Synonyms
Publications