NO10G02070.1, NO10G02070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02070.1
Unique NameNO10G02070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length405
Alignment locationchr10:571617..572155 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:571617..572155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G02070.1 vs.
Match: EWM21571.1 (histone-fold-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 242.7 bits (618), Expect = 6.700e-61
Identity = 129/135 (95.56%), Postives = 131/135 (97.04%), Query Frame = 0
Query:    1 MAGKGKAGRGAGKKG-VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKGAKGSASQDY 135
            MAGKGK+GRG GKKG VSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKK+RIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKK  KGSASQDY
Sbjct:    1 MAGKGKSGRGGGKKGGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLGGVTIASGGVLPNIHSVLLPKSKGKKSGKGSASQDY 135          
The following BLAST results are available for this feature:
BLAST of NO10G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21571.16.700e-6195.56histone-fold-containing protein [Nannochloropsis g... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02070NO10G02070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02070.1NO10G02070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02070.1.cds1NO10G02070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G02070.1.cds2NO10G02070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02070.1 ID=NO10G02070.1|Name=NO10G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=405bp
ATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTTTC
CCGTTCCTCCAAGGCTGGTCTTCAGTTCCCCGTGGGCCGTATCTCCCGCT
TCCTCAAGAAGGGCCGCTACGCCGCCCGTGTGGGATCCGGTGCCCCCGTG
TATCTGGCTGCCGTCCTCGAGTACTTGACGGCCGAGATCCTCGAGCTGGC
CGGGAACGCCGCCCGTGATAACAAAAAGTCTCGCATCATCCCCCGCCACG
TCCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTTGGCGGT
GTGACCATCGCGTCAGGCGGTGTGTTGCCGAACATTCACTCTGTGCTCTT
GCCCAAGAGCAAGGGCAAGAAGGGTGCCAAGGGCAGTGCCTCCCAGGATT
ACTAA
back to top

protein sequence of NO10G02070.1

>NO10G02070.1-protein ID=NO10G02070.1-protein|Name=NO10G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MAGKGKAGRGAGKKGVSRSSKAGLQFPVGRISRFLKKGRYAARVGSGAPV
YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGG
VTIASGGVLPNIHSVLLPKSKGKKGAKGSASQDY*
back to top

mRNA from alignment at chr10:571617..572155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02070.1 ID=NO10G02070.1|Name=NO10G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=539bp|location=Sequence derived from alignment at chr10:571617..572155- (Nannochloropsis oceanica)
ATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTTTC CCGTTCCTCCAAGGCTGGTCTTCAGTTCCCCGTGGGCCGTATCTCCCGCT TCCTCAAGAAGGGCCGCTACGCCGCCCGTGTGGGATCCGGTGCCCCCGTG TATCTGGCTGCCGTCCTCGAGTACTTGACGGCCGAGATCCTCGAGCTGGC CGGGAACGCCGCCCGTGATAACAAAAAGTCTCGCATCATCCCCCGCCACG TCCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTTGGCGGT GTGACCATCGCGTCAGGCGGTGTGTTGCCGAACATTCACTCTGGTACGTC TTGTTTTCTGTCTACCCCTCTAGATTGGGTGATTTCAACCACTGTCCATA GTTCCTCTATTCCGTATCTTCAAGCCCATCACTTTTCACGTCCTTCCCGC CATCTATTCCTTCTCACCATTACACAGTGCTCTTGCCCAAGAGCAAGGGC AAGAAGGGTGCCAAGGGCAGTGCCTCCCAGGATTACTAA
back to top

Coding sequence (CDS) from alignment at chr10:571617..572155-

>NO10G02070.1 ID=NO10G02070.1|Name=NO10G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at chr10:571617..572155- (Nannochloropsis oceanica)
ATGGCTGGCAAAGGAAAGGCTGGCCGTGGTGCCGGAAAGAAGGGCGTTTC
CCGTTCCTCCAAGGCTGGTCTTCAGTTCCCCGTGGGCCGTATCTCCCGCT
TCCTCAAGAAGGGCCGCTACGCCGCCCGTGTGGGATCCGGTGCCCCCGTG
TATCTGGCTGCCGTCCTCGAGTACTTGACGGCCGAGATCCTCGAGCTGGC
CGGGAACGCCGCCCGTGATAACAAAAAGTCTCGCATCATCCCCCGCCACG
TCCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTTGGCGGT
GTGACCATCGCGTCAGGCGGTGTGTTGCCGAACATTCACTCTGTGCTCTT
GCCCAAGAGCAAGGGCAAGAAGGGTGCCAAGGGCAGTGCCTCCCAGGATT
ACTAA
back to top
Synonyms
Publications