NO10G02000.1, NO10G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G02000.1
Unique NameNO10G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1090
Alignment locationchr10:552773..553862 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:552773..553862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G02000.1 vs.
Match: XP_002904537.1 (N(6)-adenine-specific DNA methyltransferase 2, putative [Phytophthora infestans T30-4]; EEY53906.1 N(6)-adenine-specific DNA methyltransferase 2, putative [Phytophthora infestans T30-4])

HSP 1 Score: 112.8 bits (281), Expect = 1.600e-21
Identity = 74/216 (34.26%), Postives = 113/216 (52.31%), Query Frame = 0 
Query:   51 VESELSQHTLAMLKEHLAEKEHEGPAHLLGKENYGLAQFWYSEETAKALLMEALSHVTDGGVVAVLSAPS-----LMVPAQELEGGKHF---SKLQLFEIDERFGVQFPDNFYHYDYNAATVLPTKMLRQVTAFVIDPPRLNIDTLKEYFISTRLLAKPC------TDGSVPPCIVVTAAVLEDAVREEFGLRPVLKFEIIHTSKLGNPLQAYTNY 253
            +ESELS  TLA L+ HL  + HE  A +   E++ L+QFWY E+T +AL  EA+ H ++   +A +S P+     L + ++E +  K       + +FE D RFG ++ D+F  YDYNA T LP K        +++PP L+ D L+++  + R L+K         D  V P   + + +L   ++ + G  P   F     SKL N L  YTNY
Sbjct:    5 LESELSAETLAALQAHLLGRHHEEDAPV--SEDFRLSQFWYDEKTGRALAQEAIDHSSNELKIAFVSTPAAYRDFLKIQSEEEDEAKRAVMGDNVYIFEYDRRFGEKYGDHFCFYDYNAPTDLPEKFHHFFDFVLMEPPHLSPDCLEKFSDTMRWLSKDVEAVPGKKDRVVNPSTFINSQLLRKEMKADLGFTPT-GFYPSFESKLSNHLLTYTNY 217
The following BLAST results are available for this feature:
BLAST of NO10G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002904537.11.600e-2134.26N(6)-adenine-specific DNA methyltransferase 2, put... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02000NO10G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G02000.1NO10G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G02000.1.cds1NO10G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G02000.1 ID=NO10G02000.1|Name=NO10G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp
GAGGTTATCTTCATGGGCCAACGCCGTCCTCTGGCTTCTACGGCACAACC
CAAGCCGAGCAGCGCTAGTCAAATACCCACACCATCCTCGCCCCCTACGT
TATCATGCCACTCTGCAGGAAGAGTACACGCAAGCTTGGTCTTGGCAGGA
AAAGCCCCCCCCTGGACGCTCAGTCAAGCAAGCCAGGAGTGATCATGGCT
ACGAGGACCCCGCAGCAAGAAGACGACGAGACGACGGCCGTATCGGAGGT
GGACGTGGAGAGCGAATTAAGCCAGCACACCCTGGCCATGTTGAAGGAGC
ACTTGGCCGAGAAAGAGCACGAGGGCCCTGCTCACCTCTTAGGCAAAGAG
AATTACGGCCTTGCCCAATTCTGGTATTCAGAGGAGACTGCGAAGGCGCT
CTTGATGGAAGCCCTATCCCACGTAACGGATGGTGGTGTAGTGGCCGTAT
TAAGTGCCCCCTCTCTAATGGTGCCGGCACAGGAGTTAGAGGGCGGCAAG
CATTTTTCTAAGCTGCAGCTTTTTGAGATTGATGAACGTTTCGGAGTCCA
ATTTCCCGACAATTTCTATCACTACGATTATAATGCAGCGACCGTCCTCC
CCACCAAAATGTTGAGGCAAGTGACGGCCTTTGTGATCGACCCTCCACGC
CTGAATATTGATACGTTGAAAGAGTATTTTATTTCAACACGTCTTCTCGC
CAAACCGTGCACGGACGGCAGTGTGCCGCCATGCATTGTGGTGACGGCTG
CTGTACTCGAGGACGCTGTGAGGGAGGAGTTCGGGCTGCGACCAGTACTA
AAATTTGAGATAATCCACACTAGCAAGCTAGGAAATCCGCTGCAGGCGTA
TACAAACTACCCGCCCAAGGTCTTAGACGCCTCTTCTTGGCAGGAGACTG
TATGAGTGAAGGAGAGAAAAAGAAGTGAAGACGCAGCTCACAAGTCATGC
GTGTCTTTTGCTATTTTGGCTTGTGGACTTCAATAATATGTTGTACCTGC
GCCAGGCGGAAGTTTTTCGATTTCAACTTTTGTAAAATAAAATATTGAAT
GAGAAGGAGCGAAAGGAAAAAAGCATGAAACAAAGTCAGG
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protein sequence of NO10G02000.1

>NO10G02000.1-protein ID=NO10G02000.1-protein|Name=NO10G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MPLCRKSTRKLGLGRKSPPLDAQSSKPGVIMATRTPQQEDDETTAVSEVD
VESELSQHTLAMLKEHLAEKEHEGPAHLLGKENYGLAQFWYSEETAKALL
MEALSHVTDGGVVAVLSAPSLMVPAQELEGGKHFSKLQLFEIDERFGVQF
PDNFYHYDYNAATVLPTKMLRQVTAFVIDPPRLNIDTLKEYFISTRLLAK
PCTDGSVPPCIVVTAAVLEDAVREEFGLRPVLKFEIIHTSKLGNPLQAYT
NYPPKVLDASSWQETV*
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mRNA from alignment at chr10:552773..553862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G02000.1 ID=NO10G02000.1|Name=NO10G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at chr10:552773..553862- (Nannochloropsis oceanica)
GAGGTTATCTTCATGGGCCAACGCCGTCCTCTGGCTTCTACGGCACAACC
CAAGCCGAGCAGCGCTAGTCAAATACCCACACCATCCTCGCCCCCTACGT
TATCATGCCACTCTGCAGGAAGAGTACACGCAAGCTTGGTCTTGGCAGGA
AAAGCCCCCCCCTGGACGCTCAGTCAAGCAAGCCAGGAGTGATCATGGCT
ACGAGGACCCCGCAGCAAGAAGACGACGAGACGACGGCCGTATCGGAGGT
GGACGTGGAGAGCGAATTAAGCCAGCACACCCTGGCCATGTTGAAGGAGC
ACTTGGCCGAGAAAGAGCACGAGGGCCCTGCTCACCTCTTAGGCAAAGAG
AATTACGGCCTTGCCCAATTCTGGTATTCAGAGGAGACTGCGAAGGCGCT
CTTGATGGAAGCCCTATCCCACGTAACGGATGGTGGTGTAGTGGCCGTAT
TAAGTGCCCCCTCTCTAATGGTGCCGGCACAGGAGTTAGAGGGCGGCAAG
CATTTTTCTAAGCTGCAGCTTTTTGAGATTGATGAACGTTTCGGAGTCCA
ATTTCCCGACAATTTCTATCACTACGATTATAATGCAGCGACCGTCCTCC
CCACCAAAATGTTGAGGCAAGTGACGGCCTTTGTGATCGACCCTCCACGC
CTGAATATTGATACGTTGAAAGAGTATTTTATTTCAACACGTCTTCTCGC
CAAACCGTGCACGGACGGCAGTGTGCCGCCATGCATTGTGGTGACGGCTG
CTGTACTCGAGGACGCTGTGAGGGAGGAGTTCGGGCTGCGACCAGTACTA
AAATTTGAGATAATCCACACTAGCAAGCTAGGAAATCCGCTGCAGGCGTA
TACAAACTACCCGCCCAAGGTCTTAGACGCCTCTTCTTGGCAGGAGACTG
TATGAGTGAAGGAGAGAAAAAGAAGTGAAGACGCAGCTCACAAGTCATGC
GTGTCTTTTGCTATTTTGGCTTGTGGACTTCAATAATATGTTGTACCTGC
GCCAGGCGGAAGTTTTTCGATTTCAACTTTTGTAAAATAAAATATTGAAT
GAGAAGGAGCGAAAGGAAAAAAGCATGAAACAAAGTCAGG
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Coding sequence (CDS) from alignment at chr10:552773..553862-

>NO10G02000.1 ID=NO10G02000.1|Name=NO10G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr10:552773..553862- (Nannochloropsis oceanica)
ATGCCACTCTGCAGGAAGAGTACACGCAAGCTTGGTCTTGGCAGGAAAAG
CCCCCCCCTGGACGCTCAGTCAAGCAAGCCAGGAGTGATCATGGCTACGA
GGACCCCGCAGCAAGAAGACGACGAGACGACGGCCGTATCGGAGGTGGAC
GTGGAGAGCGAATTAAGCCAGCACACCCTGGCCATGTTGAAGGAGCACTT
GGCCGAGAAAGAGCACGAGGGCCCTGCTCACCTCTTAGGCAAAGAGAATT
ACGGCCTTGCCCAATTCTGGTATTCAGAGGAGACTGCGAAGGCGCTCTTG
ATGGAAGCCCTATCCCACGTAACGGATGGTGGTGTAGTGGCCGTATTAAG
TGCCCCCTCTCTAATGGTGCCGGCACAGGAGTTAGAGGGCGGCAAGCATT
TTTCTAAGCTGCAGCTTTTTGAGATTGATGAACGTTTCGGAGTCCAATTT
CCCGACAATTTCTATCACTACGATTATAATGCAGCGACCGTCCTCCCCAC
CAAAATGTTGAGGCAAGTGACGGCCTTTGTGATCGACCCTCCACGCCTGA
ATATTGATACGTTGAAAGAGTATTTTATTTCAACACGTCTTCTCGCCAAA
CCGTGCACGGACGGCAGTGTGCCGCCATGCATTGTGGTGACGGCTGCTGT
ACTCGAGGACGCTGTGAGGGAGGAGTTCGGGCTGCGACCAGTACTAAAAT
TTGAGATAATCCACACTAGCAAGCTAGGAAATCCGCTGCAGGCGTATACA
AACTACCCGCCCAAGGTCTTAGACGCCTCTTCTTGGCAGGAGACTGTATG
A
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Synonyms
Publications