NO10G01960.1, NO10G01960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01960.1
Unique NameNO10G01960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1266
Alignment locationchr10:544908..546287 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:544908..546287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G01960.1 vs.
Match: EWM25404.1 (hypothetical protein Naga_100005g60 [Nannochloropsis gaditana])

HSP 1 Score: 671.4 bits (1731), Expect = 1.800e-189
Identity = 346/418 (82.78%), Postives = 383/418 (91.63%), Query Frame = 0 
Query:    4 TALAAVKPEDLVIAPGGTNDDFTNEQELDYLEWLVRKYKRKGRLDEARELEADVRARQEYDVRAVTRLNDVFYQAFTEQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRSWIKITPEDCRVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWYIGHHHATLLKAPASDKPAQNQQQQNAALMQQLQQSLGLNGNKIINLGGLKGQNGAGGGGTGGSMGSLDDLAAQLGALERQLGAGESRKPRVRMLKDGKYQILSEDDDEDDDDEDDEGVQRDKALTRKTVRAIQQLFNDGRITIEQKRRLLNEIIQHSNHEVPSMVEIAYELLLRNDEEVVAPQSGGKSLPAGQKTGASTTNIAAPADGDASAAATSREEDILNEFLEQCRIIAQAGEEDDE 422
            T++ AVKPEDLVI+PGG+NDDF+NEQELDYLEWLVRK+KRKGR++EAREL+ADVR RQEYDVRAVTRLN+VFYQAFT+QDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKR+WI+ITPE+ +VVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMW+I HHHATLLKAPASDKP QNQQQQNAALMQQLQQSLGLNGNKIINLGGLKGQNGA G G GGSMGSLDDLAAQLGALERQLGAGE RKPRVRMLKDGKYQILS++++E+++DED+E V RDKALTR+TVRAIQQLFN+GRI+IEQKRRLLNEIIQHSNHEVPSMVEIAYELLLR+D+   +P    K+LPAGQK+ A+       +    S A  SR +DILNEFLEQCRIIA AGE+D+E
Sbjct:   46 TSVCAVKPEDLVISPGGSNDDFSNEQELDYLEWLVRKFKRKGRMEEARELQADVRVRQEYDVRAVTRLNEVFYQAFTKQDPKVMAELWLREPEVSCIHPGVAEVVVGYDRVMRVWKDILAPKRAWIRITPENSQVVVRGNTAFAYCFERVVPDAAGSNLEQRLFATNVFVRRQGMWFIAHHHATLLKAPASDKPPQNQQQQNAALMQQLQQSLGLNGNKIINLGGLKGQNGA-GNGAGGSMGSLDDLAAQLGALERQLGAGEPRKPRVRMLKDGKYQILSDEEEEEEEDEDEESVHRDKALTRRTVRAIQQLFNEGRISIEQKRRLLNEIIQHSNHEVPSMVEIAYELLLRDDDAENSPGGESKTLPAGQKSEAAEGERTKGSKSATSGA--SRADDILNEFLEQCRIIASAGEDDEE 460
The following BLAST results are available for this feature:
BLAST of NO10G01960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25404.11.800e-18982.78hypothetical protein Naga_100005g60 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01960NO10G01960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01960.1NO10G01960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01960.1.cds1NO10G01960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01960.1.cds2NO10G01960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01960.1 ID=NO10G01960.1|Name=NO10G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
ATGACGACCACCGCGTTGGCAGCCGTCAAGCCCGAAGACCTTGTCATTGC
ACCGGGTGGGACCAACGATGACTTCACAAATGAGCAGGAGTTGGACTATC
TTGAGTGGCTGGTGCGCAAATACAAGAGGAAGGGGCGGTTGGACGAGGCC
CGTGAGCTCGAAGCAGACGTCCGGGCACGTCAGGAGTACGATGTGCGGGC
CGTAACGCGACTGAATGATGTCTTCTACCAGGCCTTCACTGAGCAAGACC
CCAAGGTCATGGCCGAGCTCTGGTTGCGGGAGCCAGAGGTGTCGTGCATT
CATCCGGGGGTGGCGGAGGTGGTGGTGGGGTACGATCGGGTCATGCGTGT
GTGGAAGGACATCTTGGCACCCAAGCGGTCGTGGATTAAAATCACGCCGG
AGGACTGCCGTGTGGTCGTGCGTGGGAATACGGCTTTCGCCTATTGTTTT
GAGCGCGTAGTTCCCGATGCTGCGGGTTCTAATCTAGAGCAGCGGCTGTT
CGCCACGAATGTGTTCGTGCGGCGGCAGGGCATGTGGTACATCGGTCACC
ACCACGCCACTCTCCTGAAGGCCCCCGCCAGCGACAAACCTGCCCAAAAC
CAACAGCAGCAAAATGCGGCGCTCATGCAGCAGCTGCAGCAGAGCCTGGG
TTTAAACGGCAATAAGATAATCAATCTTGGTGGGCTGAAAGGGCAGAACG
GAGCAGGCGGGGGAGGTACGGGGGGCTCGATGGGCTCGTTGGACGATTTG
GCCGCACAGCTGGGGGCACTAGAAAGGCAGCTGGGCGCGGGGGAGTCGCG
GAAACCGCGTGTGCGTATGCTGAAGGATGGGAAGTACCAGATTCTATCGG
AGGATGACGATGAGGACGATGATGATGAGGATGATGAGGGGGTGCAAAGG
GATAAGGCTCTAACCCGGAAGACAGTGCGTGCGATTCAGCAATTGTTTAA
TGACGGGCGCATCACTATCGAGCAGAAGCGTCGATTGCTCAACGAGATCA
TCCAGCACTCCAACCACGAAGTCCCCTCCATGGTCGAGATAGCGTACGAG
CTCCTGCTCCGCAATGATGAAGAGGTCGTCGCACCTCAAAGCGGTGGGAA
AAGCTTGCCGGCAGGGCAAAAAACTGGTGCATCTACGACCAATATTGCCG
CCCCTGCCGATGGGGATGCCTCTGCGGCGGCGACGAGCAGGGAGGAGGAT
ATTTTGAACGAGTTTCTGGAGCAATGTCGGATCATTGCGCAGGCGGGGGA
GGAGGACGATGAGTAG
back to top

protein sequence of NO10G01960.1

>NO10G01960.1-protein ID=NO10G01960.1-protein|Name=NO10G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MTTTALAAVKPEDLVIAPGGTNDDFTNEQELDYLEWLVRKYKRKGRLDEA
RELEADVRARQEYDVRAVTRLNDVFYQAFTEQDPKVMAELWLREPEVSCI
HPGVAEVVVGYDRVMRVWKDILAPKRSWIKITPEDCRVVVRGNTAFAYCF
ERVVPDAAGSNLEQRLFATNVFVRRQGMWYIGHHHATLLKAPASDKPAQN
QQQQNAALMQQLQQSLGLNGNKIINLGGLKGQNGAGGGGTGGSMGSLDDL
AAQLGALERQLGAGESRKPRVRMLKDGKYQILSEDDDEDDDDEDDEGVQR
DKALTRKTVRAIQQLFNDGRITIEQKRRLLNEIIQHSNHEVPSMVEIAYE
LLLRNDEEVVAPQSGGKSLPAGQKTGASTTNIAAPADGDASAAATSREED
ILNEFLEQCRIIAQAGEEDDE*
back to top

mRNA from alignment at chr10:544908..546287+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01960.1 ID=NO10G01960.1|Name=NO10G01960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at chr10:544908..546287+ (Nannochloropsis oceanica)
ATGACGACCACCGCGTTGGCAGCCGTCAAGCCCGAAGACCTTGTCATTGC
ACCGGGTGGGACCAACGATGACGTAAGTATGCGCATGGGGCATGTATCGG
AGGGGTACAGGTGTGGGAAGCGCATGTTGCTCAGCAGGAGCAGCTTTTCC
TCTGACAACCAAATCAACGCCCAACACCCAACACAGTTCACAAATGAGCA
GGAGTTGGACTATCTTGAGTGGCTGGTGCGCAAATACAAGAGGAAGGGGC
GGTTGGACGAGGCCCGTGAGCTCGAAGCAGACGTCCGGGCACGTCAGGAG
TACGATGTGCGGGCCGTAACGCGACTGAATGATGTCTTCTACCAGGCCTT
CACTGAGCAAGACCCCAAGGTCATGGCCGAGCTCTGGTTGCGGGAGCCAG
AGGTGTCGTGCATTCATCCGGGGGTGGCGGAGGTGGTGGTGGGGTACGAT
CGGGTCATGCGTGTGTGGAAGGACATCTTGGCACCCAAGCGGTCGTGGAT
TAAAATCACGCCGGAGGACTGCCGTGTGGTCGTGCGTGGGAATACGGCTT
TCGCCTATTGTTTTGAGCGCGTAGTTCCCGATGCTGCGGGTTCTAATCTA
GAGCAGCGGCTGTTCGCCACGAATGTGTTCGTGCGGCGGCAGGGCATGTG
GTACATCGGTCACCACCACGCCACTCTCCTGAAGGCCCCCGCCAGCGACA
AACCTGCCCAAAACCAACAGCAGCAAAATGCGGCGCTCATGCAGCAGCTG
CAGCAGAGCCTGGGTTTAAACGGCAATAAGATAATCAATCTTGGTGGGCT
GAAAGGGCAGAACGGAGCAGGCGGGGGAGGTACGGGGGGCTCGATGGGCT
CGTTGGACGATTTGGCCGCACAGCTGGGGGCACTAGAAAGGCAGCTGGGC
GCGGGGGAGTCGCGGAAACCGCGTGTGCGTATGCTGAAGGATGGGAAGTA
CCAGATTCTATCGGAGGATGACGATGAGGACGATGATGATGAGGATGATG
AGGGGGTGCAAAGGGATAAGGCTCTAACCCGGAAGACAGTGCGTGCGATT
CAGCAATTGTTTAATGACGGGCGCATCACTATCGAGCAGAAGCGTCGATT
GCTCAACGAGATCATCCAGCACTCCAACCACGAAGTCCCCTCCATGGTCG
AGATAGCGTACGAGCTCCTGCTCCGCAATGATGAAGAGGTCGTCGCACCT
CAAAGCGGTGGGAAAAGCTTGCCGGCAGGGCAAAAAACTGGTGCATCTAC
GACCAATATTGCCGCCCCTGCCGATGGGGATGCCTCTGCGGCGGCGACGA
GCAGGGAGGAGGATATTTTGAACGAGTTTCTGGAGCAATGTCGGATCATT
GCGCAGGCGGGGGAGGAGGACGATGAGTAG
back to top

Coding sequence (CDS) from alignment at chr10:544908..546287+

>NO10G01960.1 ID=NO10G01960.1|Name=NO10G01960.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr10:544908..546287+ (Nannochloropsis oceanica)
ATGACGACCACCGCGTTGGCAGCCGTCAAGCCCGAAGACCTTGTCATTGC
ACCGGGTGGGACCAACGATGACTTCACAAATGAGCAGGAGTTGGACTATC
TTGAGTGGCTGGTGCGCAAATACAAGAGGAAGGGGCGGTTGGACGAGGCC
CGTGAGCTCGAAGCAGACGTCCGGGCACGTCAGGAGTACGATGTGCGGGC
CGTAACGCGACTGAATGATGTCTTCTACCAGGCCTTCACTGAGCAAGACC
CCAAGGTCATGGCCGAGCTCTGGTTGCGGGAGCCAGAGGTGTCGTGCATT
CATCCGGGGGTGGCGGAGGTGGTGGTGGGGTACGATCGGGTCATGCGTGT
GTGGAAGGACATCTTGGCACCCAAGCGGTCGTGGATTAAAATCACGCCGG
AGGACTGCCGTGTGGTCGTGCGTGGGAATACGGCTTTCGCCTATTGTTTT
GAGCGCGTAGTTCCCGATGCTGCGGGTTCTAATCTAGAGCAGCGGCTGTT
CGCCACGAATGTGTTCGTGCGGCGGCAGGGCATGTGGTACATCGGTCACC
ACCACGCCACTCTCCTGAAGGCCCCCGCCAGCGACAAACCTGCCCAAAAC
CAACAGCAGCAAAATGCGGCGCTCATGCAGCAGCTGCAGCAGAGCCTGGG
TTTAAACGGCAATAAGATAATCAATCTTGGTGGGCTGAAAGGGCAGAACG
GAGCAGGCGGGGGAGGTACGGGGGGCTCGATGGGCTCGTTGGACGATTTG
GCCGCACAGCTGGGGGCACTAGAAAGGCAGCTGGGCGCGGGGGAGTCGCG
GAAACCGCGTGTGCGTATGCTGAAGGATGGGAAGTACCAGATTCTATCGG
AGGATGACGATGAGGACGATGATGATGAGGATGATGAGGGGGTGCAAAGG
GATAAGGCTCTAACCCGGAAGACAGTGCGTGCGATTCAGCAATTGTTTAA
TGACGGGCGCATCACTATCGAGCAGAAGCGTCGATTGCTCAACGAGATCA
TCCAGCACTCCAACCACGAAGTCCCCTCCATGGTCGAGATAGCGTACGAG
CTCCTGCTCCGCAATGATGAAGAGGTCGTCGCACCTCAAAGCGGTGGGAA
AAGCTTGCCGGCAGGGCAAAAAACTGGTGCATCTACGACCAATATTGCCG
CCCCTGCCGATGGGGATGCCTCTGCGGCGGCGACGAGCAGGGAGGAGGAT
ATTTTGAACGAGTTTCTGGAGCAATGTCGGATCATTGCGCAGGCGGGGGA
GGAGGACGATGAGTAG
back to top
Synonyms
Publications