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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:539868..542724 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01940.1 vs.
Match: EWM25386.1 (Type II pantothenate kinase [Nannochloropsis gaditana]) HSP 1 Score: 912.5 bits (2357), Expect = 8.400e-262 Identity = 511/750 (68.13%), Postives = 568/750 (75.73%), Query Frame = 0
Query: 2 APSTGGGRASR---VGSGLSKATLFILISIGTIVAVAARTRSKKRRRSMSYALGPDGKHVDIGAIFGLDVGGTLSKLVYFEQTRKSRKVERTQQQKKRSNYFDNPLKKATTLKRSASLENLNTPRHTKALDAFYDFMQAEGSPVRAELRDDNLTFFSRVLGGELHFMRFETRYMDRVVDIVKSNRLHHSINSMGCTGGGAYKFSDLFQERLGITLRKMDELDCLMRGLEFVLQHVVGECYTYKPDKSLTMPLPSPGSSGLDHRMSWRGSYAPAPAPAPLLMTSSTVSSSSPPQRDPVVGIPPLPKGKVSRPGVLGTSTSSTAEVDDSAAMMGNSEQYAFPVEDDSRLVLSLDGQPSSGGDEEDPEVSPRLQSSFPSSFTTPSSPAISDDGEEARRPPQSSGSANSNSLKQEWKYKVQRSGEHVIYPYLVVNIGSGVSILKVEGPGKYERISGSSLGGGTYWGLCRLLTGCKSFDEVLDLAEMGDANVVDMTVGDIYGRGYDKFHLSPSVIASSFGKLATRQDPGEGIKEEDMARALLMMITGNIGQVAYLNAVIHQATHIYFVGNFLRHNKISCRRLAYAIDYWSAGKMEALFLEHEGYFGSLGAFLNSSYVEDLHAHTQEAARGLAQTVGPGVIPTGSTARAAAEAPVTATAEAVAGGGKGDEKAEKAARRAMLLRKQESSPLPTDPRIKGGGVRRVEKLRLQESYGGFLDSAMDNGPVASSPSL--DAGLAGGEITNPAARAAVAAHV 747
A GGG S G G + TLF+L++ G +VAVAARTRSKKRRR+MSY LGPDGKHVDIGAIFGLDVGGTLSKLVYFEQTRKSRKVER QQQK+R NY D P +K+T LKRSASLENL+TPRHTKALDAFY F+QAEGSPVRAELRDDNLTFFSRVLGGELHFMRFETRYMDRVV+IVKSNRLHHSINSMGCTGGGAYKFSDLFQERLGI LRKMDELDCLMRGLEFVLQHVVGECYTYKPDKSL++PLPSPG+ GLD+RMSWRGS+AP + S +S + P+ PP K K R L S S+ V A E+ P DD L LS + + D P + P+S ++PSSP G+E RRPP S+G+AN+ +LKQEWKYKVQRSGEHVIYPYLVVNIGSGVSILKVEGPG+YERISGSSLGGGTYWGLCRLLTGCKSFDEVLDLAEMGDA +VDMTVGDIYGRGYDKFHLS SVIASSFGKLAT DPGE I+EEDMARALLMMITGNIGQVAYLNAVIH+ATHIYFVGNFLRHNKISCRRLAYAIDYWSAGKMEALFLEHEGYFG+LGAFLNSSYVEDLHAH QE+ G +Q A + + GGKG KA+ AA R L+ ES P+ +DPRI+ R+E LRL++SYGGFL+ +D + P L D ++ G + AAVA V
Sbjct: 5 AVQAGGGVGSGRRGTGGGSWQTTLFVLLAAGAVVAVAARTRSKKRRRTMSYVLGPDGKHVDIGAIFGLDVGGTLSKLVYFEQTRKSRKVERMQQQKRR-NYTDKPFQKST-LKRSASLENLSTPRHTKALDAFYAFIQAEGSPVRAELRDDNLTFFSRVLGGELHFMRFETRYMDRVVEIVKSNRLHHSINSMGCTGGGAYKFSDLFQERLGIVLRKMDELDCLMRGLEFVLQHVVGECYTYKPDKSLSLPLPSPGAGGLDNRMSWRGSHAPGLSSPHSSSCSGAISPTQLPEA------PPHEKAKPRRLPGLNLSASAPLTV----AAGSTEERRPPPYGDDRGLGLSTAAEVAGESLCNDNSEVPTRERDQPAS-SSPSSPPGRGYGQEPRRPPTSTGAANAGNLKQEWKYKVQRSGEHVIYPYLVVNIGSGVSILKVEGPGRYERISGSSLGGGTYWGLCRLLTGCKSFDEVLDLAEMGDATMVDMTVGDIYGRGYDKFHLSSSVIASSFGKLATCHDPGEVIREEDMARALLMMITGNIGQVAYLNAVIHRATHIYFVGNFLRHNKISCRRLAYAIDYWSAGKMEALFLEHEGYFGALGAFLNSSYVEDLHAHAQESV-GASQAKRSHRATPNKDNIVAEPGTSESCGMSNGKGGKGANKADHAAAR---LQHHESMPIHSDPRIR--DAPRLESLRLEKSYGGFLEPVVDE---SGDPLLGTDQRVSDGRTNRSSQSAAVATEV 732
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01940.1 ID=NO10G01940.1|Name=NO10G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp CAGTCTACTAGGCACCATGGCACCTTCCACAGGGGGCGGTCGGGCCAGCC GGGTGGGATCGGGCCTCTCCAAAGCTACTCTCTTCATCCTGATTTCCATA GGGACCATCGTGGCGGTGGCGGCCCGCACACGGTCAAAGAAGCGACGGCG GAGCATGTCCTACGCGCTGGGTCCTGATGGAAAGCACGTAGATATTGGAG CCATTTTTGGTCTGGACGTAGGCGGCACGCTGAGTAAGCTCGTGTACTTT GAGCAGACACGCAAGTCCCGCAAGGTGGAACGAACCCAGCAGCAAAAAAA GCGGTCCAACTACTTCGACAACCCCCTCAAGAAAGCCACCACCTTGAAAC GGAGCGCCTCCCTCGAGAATCTCAACACCCCGCGACACACCAAGGCATTA GATGCTTTTTACGACTTCATGCAAGCAGAAGGCAGCCCCGTGCGAGCCGA GCTGCGTGATGATAATTTGACGTTCTTCTCACGGGTGCTGGGCGGCGAGT TGCATTTTATGCGGTTTGAGACCCGGTACATGGACCGAGTGGTGGACATC GTCAAGTCCAACCGCCTCCATCATAGCATTAACAGCATGGGTTGCACCGG TGGGGGCGCCTACAAATTTTCCGACCTTTTTCAAGAACGTCTCGGCATTA CCCTGCGCAAAATGGACGAGCTCGACTGCCTAATGCGAGGGCTGGAATTT GTCTTACAGCATGTTGTCGGCGAATGCTACACCTACAAGCCCGACAAGTC CCTAACCATGCCCCTCCCTTCGCCTGGGAGCAGCGGGCTCGACCACCGCA TGAGCTGGCGAGGGTCATATGCCCCGGCCCCTGCTCCTGCACCTCTTTTG ATGACATCCTCTACTGTCTCCTCCTCCTCGCCGCCACAGCGAGACCCAGT CGTGGGCATTCCCCCCCTGCCCAAGGGGAAGGTCAGCCGACCCGGCGTTC TGGGCACCTCGACTTCCTCCACGGCAGAGGTGGACGACAGTGCAGCGATG ATGGGCAATTCAGAGCAGTACGCATTTCCGGTTGAAGATGATAGCAGGCT GGTCTTGTCTTTGGACGGCCAGCCTTCTTCGGGGGGAGATGAGGAGGATC CTGAGGTGTCCCCGCGCTTGCAGAGCTCTTTCCCTTCATCCTTCACGACT CCGTCTTCGCCGGCAATTTCTGACGATGGGGAGGAAGCAAGAAGGCCACC GCAGAGCTCGGGCAGCGCCAACTCGAATTCATTGAAACAAGAATGGAAAT ACAAAGTCCAGCGATCAGGCGAACACGTTATTTACCCGTACCTTGTCGTG AACATCGGCTCGGGTGTCAGCATCCTGAAGGTCGAAGGCCCGGGAAAATA TGAACGTATCTCCGGCAGCAGCTTGGGAGGTGGTACTTACTGGGGACTCT GTCGCCTCCTGACGGGTTGTAAAAGCTTTGATGAGGTTCTGGATCTAGCG GAGATGGGCGATGCAAATGTGGTGGATATGACGGTAGGAGATATATATGG AAGGGGGTACGATAAATTTCATTTGTCGCCCTCGGTGATAGCCTCGTCGT TTGGGAAGCTTGCCACGAGGCAAGACCCAGGGGAGGGGATCAAGGAGGAA GATATGGCGAGGGCATTATTGATGATGATAACGGGTAACATCGGCCAGGT TGCGTATTTGAATGCTGTGATTCATCAGGCGACGCATATTTATTTTGTGG GGAACTTCTTGCGGCACAATAAGATTTCGTGTCGTCGGCTCGCGTATGCG ATTGACTATTGGAGCGCGGGGAAGATGGAAGCGCTCTTTCTTGAGCACGA AGGATATTTCGGTTCCCTTGGCGCCTTTCTCAACTCTAGCTACGTCGAAG ACTTGCACGCACACACCCAAGAAGCGGCAAGGGGACTCGCGCAAACCGTC GGACCAGGGGTGATTCCTACGGGAAGTACCGCCCGGGCTGCGGCTGAGGC TCCTGTTACTGCCACTGCTGAAGCTGTGGCTGGAGGGGGAAAGGGAGATG AGAAGGCGGAAAAGGCAGCGCGGAGGGCGATGCTGTTGCGGAAGCAAGAG TCCTCGCCATTGCCGACGGATCCGAGGATTAAAGGGGGGGGCGTGCGGAG GGTGGAAAAATTACGGTTGCAGGAAAGTTATGGGGGATTCTTGGACTCCG CCATGGACAATGGGCCGGTGGCCTCTTCTCCTAGCTTGGATGCTGGGCTT GCTGGCGGCGAGATAACTAATCCGGCTGCACGGGCTGCTGTGGCTGCGCA TGTGTAGGAGAGCTCAATTGGAGCTTGCTTTGCTCAAGAAGAGAATTAAA AGTTGATGACTTAGAAATCGTTTCAAATTTAACACTTAACGTTGGTA back to topprotein sequence of NO10G01940.1 >NO10G01940.1-protein ID=NO10G01940.1-protein|Name=NO10G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=747bp MAPSTGGGRASRVGSGLSKATLFILISIGTIVAVAARTRSKKRRRSMSYA LGPDGKHVDIGAIFGLDVGGTLSKLVYFEQTRKSRKVERTQQQKKRSNYF DNPLKKATTLKRSASLENLNTPRHTKALDAFYDFMQAEGSPVRAELRDDN LTFFSRVLGGELHFMRFETRYMDRVVDIVKSNRLHHSINSMGCTGGGAYK FSDLFQERLGITLRKMDELDCLMRGLEFVLQHVVGECYTYKPDKSLTMPL PSPGSSGLDHRMSWRGSYAPAPAPAPLLMTSSTVSSSSPPQRDPVVGIPP LPKGKVSRPGVLGTSTSSTAEVDDSAAMMGNSEQYAFPVEDDSRLVLSLD GQPSSGGDEEDPEVSPRLQSSFPSSFTTPSSPAISDDGEEARRPPQSSGS ANSNSLKQEWKYKVQRSGEHVIYPYLVVNIGSGVSILKVEGPGKYERISG SSLGGGTYWGLCRLLTGCKSFDEVLDLAEMGDANVVDMTVGDIYGRGYDK FHLSPSVIASSFGKLATRQDPGEGIKEEDMARALLMMITGNIGQVAYLNA VIHQATHIYFVGNFLRHNKISCRRLAYAIDYWSAGKMEALFLEHEGYFGS LGAFLNSSYVEDLHAHTQEAARGLAQTVGPGVIPTGSTARAAAEAPVTAT AEAVAGGGKGDEKAEKAARRAMLLRKQESSPLPTDPRIKGGGVRRVEKLR LQESYGGFLDSAMDNGPVASSPSLDAGLAGGEITNPAARAAVAAHV* back to topmRNA from alignment at chr10:539868..542724- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01940.1 ID=NO10G01940.1|Name=NO10G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2857bp|location=Sequence derived from alignment at chr10:539868..542724- (Nannochloropsis oceanica) CAGTCTACTAGGCACCATGGCACCTTCCACAGGGGGCGGTCGGGCCAGCC
GGGTGGGATCGGGCCTCTCCAAAGCTACTCTCTTCATCCTGATTTCCATA
GGGACCATCGTGGCGGTGGCGGCCCGCACACGGTCAAAGAAGCGACGGCG
GAGCATGTCCTACGCGCTGGGTCCTGATGGAAAGCACGTAGATATTGGAG
GTGAGTGATAACGGAGAGGTTGGACCGAATAATTAGAGAGGGGAGGGAAA
GGGACCGATGGAATGCCTCGCTCACCCCTTCTTGATATTTCCCCCCTTAT
CATAATAGCCATTTTTGGTCTGGACGTAGGCGGCACGCTGAGTAAGCTCG
TGTACTTTGAGCAGACACGCAAGTCCCGCAAGGTGGAACGAACCCAGCAG
CAAAAAAAGCGGTCCAACTACTTCGACAACCCCCTCAAGAAAGCCACCAC
CTTGAAACGGAGCGCCTCCCTCGAGAATCTCAACACCCCGCGACACACCA
AGGCATTAGATGCTTTTTACGACTTCATGCAAGCAGAAGGCAGCCCCGTG
CGAGCCGAGCTGCGTGATGATAATTTGACGTTCTTCTCACGGGTGCTGGG
CGGCGAGTTGCATTTTATGCGGTTTGAGACCCGGTACATGGACCGAGTGG
TGGACATCGTCAAGTCCAACCGGTGAGTTGTGCGGAAGGTAGTAACAACA
GGCTAGCTAAAAGAATGCTGTGAGTCATACAAGTGTTTCATTTCCGTGGT
CACCGCTGACTTACCCTCACATTTTCCCTTTTTTTCTCGTTCCAATCCTT
CACTTGTACCTTGCAGCCTCCATCATAGCATTAACAGCATGGGTTGCACC
GGTGGGGGCGCCTACAAATTTTCCGACCTTTTTCAAGAACGTCTCGGCAT
TACCCTGCGCAAAATGGACGAGCTCGACTGCCTAATGCGAGGGCTGGAAT
TTGTCTTACAGCATGTTGTCGGCGAATGCTACACCTACAAGCCCGACAAG
TCCCTAACCATGCCCCTCCCTTCGCCTGGGAGCAGCGGGCTCGACCACCG
CATGAGCTGGCGAGGGTCATATGCCCCGGCCCCTGCTCCTGCACCTCTTT
TGATGACATCCTCTACTGTCTCCTCCTCCTCGCCGCCACAGCGAGACCCA
GTCGTGGGCATTCCCCCCCTGCCCAAGGGGAAGGTCAGCCGACCCGGCGT
TCTGGGCACCTCGACTTCCTCCACGGCAGAGGTGGACGACAGTGCAGCGA
TGATGGGCAATTCAGAGCAGTACGCATTTCCGGTTGAAGATGATAGCAGG
CTGGTCTTGTCTTTGGACGGCCAGCCTTCTTCGGGGGGAGATGAGGAGGA
TCCTGAGGTGTCCCCGCGCTTGCAGAGCTCTTTCCCTTCATCCTTCACGA
CTCCGTCTTCGCCGGCAATTTCTGACGATGGGGAGGAAGCAAGAAGGCCA
CCGCAGGTAAGAAATAAGAAAGAGAGCGTTAAGGTATCATAATTGTGACA
TAATTGTTCATGTAGCAATGGGTCGTGTGCTTACTTCTCGTCTCCTGTCT
TTCATTCTGTCCATTTTCGCCCAGAGCTCGGGCAGCGCCAACTCGAATTC
ATTGAAACAAGAATGGAAATACAAAGTCCAGCGATCAGGTAAGACAGCAC
ATGCAGAGAAGGCTTGAGGCATCCCTCCCCATCACGCACTCTGGTTCCAG
CGTTCTTGTCACATGTGCTAAGCCCTCTTCTCCTTCCTCCTCCTCCCTTC
CACTACCCTTACCCTTTACGGAAATCAGGCGAACACGTTATTTACCCGTA
CCTTGTCGTGAACATCGGCTCGGGTGTCAGCATCCTGAAGGTCGAAGGCC
CGGGAAAATATGAACGTATCTCCGGCAGCAGCTTGGGAGGTGGTACTTAC
TGGGGACTCTGTCGCCTCCTGACGGGTTGTAAAAGCTTTGATGAGGTTCT
GGATCTAGCGGAGATGGGCGATGCAAATGTGGTGGATATGACGGTAGGAG
ATATATATGGAAGGGGGTACGATAAATTTCATTTGTCGCCCTCGGTGATA
GCCTCGTCGTTTGGGAAGCTTGCCACGAGGCAAGACCCAGGGGAGGGGAT
CAAGGAGGAAGATATGGCGAGGGCATTATTGATGATGATAACGGGTAACA
TCGGCCAGGTTGCGTATTTGAATGCTGTGATTCATCAGGCGACGCATATT
TATTTTGTGGGGAACTTCTTGCGGCACAATAAGATTTCGTGTCGTCGGCT
CGCGTATGCGATTGACTATTGGAGCGCGGGGAAGATGGAAGCGCTCTTTC
TTGAGCACGAAGGATATTTCGGTTCCCTTGGCGCCTTTCTCAACTCTAGC
TACGTCGAAGACTTGCACGCACACACCCAAGAAGCGGCAAGGGGACTCGC
GCAAACCGTCGGACCAGGGGTGATTCCTACGGGAAGTACCGCCCGGGCTG
CGGCTGAGGCTCCTGTTACTGCCACTGCTGAAGCTGTGGCTGGAGGGGGA
AAGGGAGATGAGAAGGCGGAAAAGGCAGCGCGGAGGGCGATGCTGTTGCG
GAAGCAAGAGTCCTCGCCATTGCCGACGGATCCGAGGATTAAAGGGGGGG
GCGTGCGGAGGGTGGAAAAATTACGGTTGCAGGAAAGTTATGGGGGATTC
TTGGACTCCGCCATGGACAATGGGCCGGTGGCCTCTTCTCCTAGCTTGGA
TGCTGGGCTTGCTGGCGGCGAGATAACTAATCCGGCTGCACGGGCTGCTG
TGGCTGCGCATGTGTAGGAGAGCTCAATTGGAGCTTGCTTTGCTCAAGAA
GAGAATTAAAAGTTGATGACTTAGAAATCGTTTCAAATTTAACACTTAAC
GTTGGTA back to topCoding sequence (CDS) from alignment at chr10:539868..542724- >NO10G01940.1 ID=NO10G01940.1|Name=NO10G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=2241bp|location=Sequence derived from alignment at chr10:539868..542724- (Nannochloropsis oceanica) ATGGCACCTTCCACAGGGGGCGGTCGGGCCAGCCGGGTGGGATCGGGCCT CTCCAAAGCTACTCTCTTCATCCTGATTTCCATAGGGACCATCGTGGCGG TGGCGGCCCGCACACGGTCAAAGAAGCGACGGCGGAGCATGTCCTACGCG CTGGGTCCTGATGGAAAGCACGTAGATATTGGAGCCATTTTTGGTCTGGA CGTAGGCGGCACGCTGAGTAAGCTCGTGTACTTTGAGCAGACACGCAAGT CCCGCAAGGTGGAACGAACCCAGCAGCAAAAAAAGCGGTCCAACTACTTC GACAACCCCCTCAAGAAAGCCACCACCTTGAAACGGAGCGCCTCCCTCGA GAATCTCAACACCCCGCGACACACCAAGGCATTAGATGCTTTTTACGACT TCATGCAAGCAGAAGGCAGCCCCGTGCGAGCCGAGCTGCGTGATGATAAT TTGACGTTCTTCTCACGGGTGCTGGGCGGCGAGTTGCATTTTATGCGGTT TGAGACCCGGTACATGGACCGAGTGGTGGACATCGTCAAGTCCAACCGCC TCCATCATAGCATTAACAGCATGGGTTGCACCGGTGGGGGCGCCTACAAA TTTTCCGACCTTTTTCAAGAACGTCTCGGCATTACCCTGCGCAAAATGGA CGAGCTCGACTGCCTAATGCGAGGGCTGGAATTTGTCTTACAGCATGTTG TCGGCGAATGCTACACCTACAAGCCCGACAAGTCCCTAACCATGCCCCTC CCTTCGCCTGGGAGCAGCGGGCTCGACCACCGCATGAGCTGGCGAGGGTC ATATGCCCCGGCCCCTGCTCCTGCACCTCTTTTGATGACATCCTCTACTG TCTCCTCCTCCTCGCCGCCACAGCGAGACCCAGTCGTGGGCATTCCCCCC CTGCCCAAGGGGAAGGTCAGCCGACCCGGCGTTCTGGGCACCTCGACTTC CTCCACGGCAGAGGTGGACGACAGTGCAGCGATGATGGGCAATTCAGAGC AGTACGCATTTCCGGTTGAAGATGATAGCAGGCTGGTCTTGTCTTTGGAC GGCCAGCCTTCTTCGGGGGGAGATGAGGAGGATCCTGAGGTGTCCCCGCG CTTGCAGAGCTCTTTCCCTTCATCCTTCACGACTCCGTCTTCGCCGGCAA TTTCTGACGATGGGGAGGAAGCAAGAAGGCCACCGCAGAGCTCGGGCAGC GCCAACTCGAATTCATTGAAACAAGAATGGAAATACAAAGTCCAGCGATC AGGCGAACACGTTATTTACCCGTACCTTGTCGTGAACATCGGCTCGGGTG TCAGCATCCTGAAGGTCGAAGGCCCGGGAAAATATGAACGTATCTCCGGC AGCAGCTTGGGAGGTGGTACTTACTGGGGACTCTGTCGCCTCCTGACGGG TTGTAAAAGCTTTGATGAGGTTCTGGATCTAGCGGAGATGGGCGATGCAA ATGTGGTGGATATGACGGTAGGAGATATATATGGAAGGGGGTACGATAAA TTTCATTTGTCGCCCTCGGTGATAGCCTCGTCGTTTGGGAAGCTTGCCAC GAGGCAAGACCCAGGGGAGGGGATCAAGGAGGAAGATATGGCGAGGGCAT TATTGATGATGATAACGGGTAACATCGGCCAGGTTGCGTATTTGAATGCT GTGATTCATCAGGCGACGCATATTTATTTTGTGGGGAACTTCTTGCGGCA CAATAAGATTTCGTGTCGTCGGCTCGCGTATGCGATTGACTATTGGAGCG CGGGGAAGATGGAAGCGCTCTTTCTTGAGCACGAAGGATATTTCGGTTCC CTTGGCGCCTTTCTCAACTCTAGCTACGTCGAAGACTTGCACGCACACAC CCAAGAAGCGGCAAGGGGACTCGCGCAAACCGTCGGACCAGGGGTGATTC CTACGGGAAGTACCGCCCGGGCTGCGGCTGAGGCTCCTGTTACTGCCACT GCTGAAGCTGTGGCTGGAGGGGGAAAGGGAGATGAGAAGGCGGAAAAGGC AGCGCGGAGGGCGATGCTGTTGCGGAAGCAAGAGTCCTCGCCATTGCCGA CGGATCCGAGGATTAAAGGGGGGGGCGTGCGGAGGGTGGAAAAATTACGG TTGCAGGAAAGTTATGGGGGATTCTTGGACTCCGCCATGGACAATGGGCC GGTGGCCTCTTCTCCTAGCTTGGATGCTGGGCTTGCTGGCGGCGAGATAA CTAATCCGGCTGCACGGGCTGCTGTGGCTGCGCATGTGTAG back to top
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