NO10G01880.1, NO10G01880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01880.1
Unique NameNO10G01880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1719
Alignment locationchr10:524558..526492 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:524558..526492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01880.1 vs.
Match: EWM25378.1 (folate biopterin transporter [Nannochloropsis gaditana])

HSP 1 Score: 680.2 bits (1754), Expect = 5.400e-192
Identity = 359/459 (78.21%), Postives = 401/459 (87.36%), Query Frame = 0 
Query:   88 RRRMTPTVTSMQSKDSSSTTPPTPLVWSNVLRDKLLLGVEPSPDVYAILIVYFVQGAIGLARLATTFYLKDDLHLSPAESAALTGIFSTPWLLKPLYGFLSDGFPLGGYRRRSYLALSGLLGALSYLALASPGVVDSVGTATVAITLGSLSVAVSDVVADSLVVEKIQAAGPGGDPKLAGGLQSLCWGSSAMGGITSAYFSGVLLETIGTRGLFGITASLPLLVTLVSLSIRETRLSFDYSSSISLAKEQAMLLRLALTQKSVYLPLFFLVLWQGSPSSDSAFFYFLTNELHMQPEFLGRVRLGTSIASLAGVWLYQRYLREVPIAKILFWTTLASVPLGLTQLILVYHLNTGLGIPNEIFTFGDSVVLTVLGQIAFMPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSK 547
            ++R+  T   +Q +D+S+T P T L W+  +R+ L LGVEPSPDV AIL+VYFVQGAIGLARLATTFYLKDDLHLSPA+SAAL GIF+ PWLLKPLYGFLSDGFPLGGYRRRSYLA+SGLLGA+SY  LA PG+VDSV  AT+A T GSLSVAVSDVVADS+VVEKI+   P G+ KLAGGLQSLCWGSSA+GGI SAYFSG LLE +GTR +FGITA LPLLVTL+S+ I+E R++ DYS S + A++Q   L  A++QKSVYLPLFFL+LWQGSPSSDSAFFYFLT EL M PEFLGRVRLGTSIASLAGVWLYQRYLREVPI+K+L WTTLASVPLGLTQL+LVYH+N GLGIP+E+FTFGDSVVLTVLGQIAFMPTLVLAARLCPPGIEGTLFATLMSVFNGAGALG ELGA LTSALGVTE NF+NLGLLI ICNLS+LLSLPFLSLL  E  K
Sbjct:   67 KKRVAGTRMLLQGEDASNT-PSTGLKWNQAIRNNLFLGVEPSPDVTAILVVYFVQGAIGLARLATTFYLKDDLHLSPAQSAALMGIFTAPWLLKPLYGFLSDGFPLGGYRRRSYLAISGLLGAVSYFVLAFPGLVDSVAAATLACTFGSLSVAVSDVVADSIVVEKIRTESPAGNLKLAGGLQSLCWGSSAVGGIVSAYFSGFLLEHLGTRAVFGITAILPLLVTLISMGIQERRVTVDYSHSWNRARDQVAALWSAVSQKSVYLPLFFLILWQGSPSSDSAFFYFLTGELGMGPEFLGRVRLGTSIASLAGVWLYQRYLREVPISKVLLWTTLASVPLGLTQLVLVYHINAGLGIPDEVFTFGDSVVLTVLGQIAFMPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGTELGALLTSALGVTERNFENLGLLIIICNLSSLLSLPFLSLLGNEDDK 524
The following BLAST results are available for this feature:
BLAST of NO10G01880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25378.15.400e-19278.21folate biopterin transporter [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01880NO10G01880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01880.1NO10G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01880.1.cds1NO10G01880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01880.1.cds2NO10G01880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01880.1 ID=NO10G01880.1|Name=NO10G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp
ATGGAGCCTTATCCCATACTAAATTTAATACCACCACTCACAGGGAAGGC
AAGAAAGTACAGGAGCGCAGAAGAAGACCAACAGCTGGTCATGCAGCAAC
GCGCGAAGAGGCCGAGGCGGTGTGGTGAGGAGGTCATTGTGATGCTGCTG
ATGGTGCTGTTTGTGCTCGTCGTCTCGTCTGTGCAAGCGTTTGGGCCACC
ACCACTACCATGGACCTATATGCAGCCTCTTCATCGACCTGGCGGTGCGA
TCACAGGAAGAAGAAGAAGGATGACCCCGACGGTGACGTCGATGCAGAGC
AAGGACAGCTCGAGCACCACCCCTCCTACACCTCTAGTATGGTCCAACGT
GTTGCGCGACAAGTTGCTCCTAGGTGTGGAGCCCTCGCCGGACGTGTACG
CCATCCTTATCGTGTATTTTGTGCAAGGTGCCATCGGCTTGGCCCGCCTT
GCCACAACCTTCTACCTCAAGGACGACCTACACTTGTCCCCTGCGGAGTC
CGCCGCCCTCACAGGCATTTTTTCGACGCCTTGGCTGCTTAAACCTCTTT
ACGGCTTTTTATCCGACGGGTTTCCTTTGGGCGGGTATCGTCGTCGATCC
TACTTAGCGCTCTCTGGTCTCTTAGGAGCACTTTCCTATTTGGCTTTGGC
CTCCCCCGGCGTAGTGGACTCAGTGGGCACGGCCACGGTCGCCATCACGC
TGGGCTCGCTCTCGGTGGCGGTCAGTGATGTGGTGGCCGATTCTCTCGTG
GTAGAGAAGATTCAGGCAGCGGGCCCTGGGGGAGATCCCAAGCTAGCGGG
CGGCTTACAGTCCTTATGCTGGGGCAGCTCAGCCATGGGAGGGATTACAA
GTGCTTACTTCTCTGGGGTGTTGCTGGAAACGATCGGAACGAGGGGTTTG
TTTGGAATTACGGCCTCGTTACCCTTGTTGGTGACTTTAGTTTCGCTGTC
TATTCGGGAGACACGGCTGTCATTTGATTACAGCAGCTCTATCAGTCTGG
CCAAGGAGCAAGCCATGCTCTTGCGGTTAGCCCTCACGCAGAAATCAGTG
TACCTTCCCCTCTTCTTTCTGGTCTTGTGGCAAGGCAGCCCTTCCAGTGA
CTCGGCCTTCTTTTATTTCCTCACGAATGAGCTGCACATGCAGCCCGAGT
TCCTCGGCCGGGTGCGCTTAGGGACCAGCATCGCCTCCCTCGCTGGGGTG
TGGCTCTACCAGCGCTACCTGCGGGAGGTGCCGATTGCCAAAATCCTCTT
TTGGACCACGCTCGCTTCAGTACCGCTGGGGTTGACGCAACTTATCCTGG
TGTACCACCTAAACACCGGTCTGGGGATCCCCAACGAGATCTTCACCTTC
GGCGACAGTGTAGTGCTGACTGTACTCGGCCAGATAGCCTTCATGCCGAC
GCTGGTCTTGGCTGCGCGTTTGTGTCCTCCAGGCATTGAGGGGACACTCT
TTGCGACGTTGATGAGCGTGTTTAACGGTGCGGGGGCTTTGGGCGCAGAG
CTGGGGGCATTTTTGACGTCCGCGCTGGGTGTCACCGAGAATAATTTTCA
GAATTTGGGTCTGCTAATCGCCATTTGCAACCTCAGCACCCTTTTGTCTC
TACCATTTTTGTCCTTGCTCCCAGCGGAAAAAAGCAAGAGTGGCGAAGGG
GGCGATGCACGAGGAGTTGAGCAGGAGGAACAGAAGATGGAGGGACATGT
CCACGAGACAAAAAATTAG
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protein sequence of NO10G01880.1

>NO10G01880.1-protein ID=NO10G01880.1-protein|Name=NO10G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MEPYPILNLIPPLTGKARKYRSAEEDQQLVMQQRAKRPRRCGEEVIVMLL
MVLFVLVVSSVQAFGPPPLPWTYMQPLHRPGGAITGRRRRMTPTVTSMQS
KDSSSTTPPTPLVWSNVLRDKLLLGVEPSPDVYAILIVYFVQGAIGLARL
ATTFYLKDDLHLSPAESAALTGIFSTPWLLKPLYGFLSDGFPLGGYRRRS
YLALSGLLGALSYLALASPGVVDSVGTATVAITLGSLSVAVSDVVADSLV
VEKIQAAGPGGDPKLAGGLQSLCWGSSAMGGITSAYFSGVLLETIGTRGL
FGITASLPLLVTLVSLSIRETRLSFDYSSSISLAKEQAMLLRLALTQKSV
YLPLFFLVLWQGSPSSDSAFFYFLTNELHMQPEFLGRVRLGTSIASLAGV
WLYQRYLREVPIAKILFWTTLASVPLGLTQLILVYHLNTGLGIPNEIFTF
GDSVVLTVLGQIAFMPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAE
LGAFLTSALGVTENNFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEG
GDARGVEQEEQKMEGHVHETKN*
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mRNA from alignment at chr10:524558..526492+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01880.1 ID=NO10G01880.1|Name=NO10G01880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at chr10:524558..526492+ (Nannochloropsis oceanica)
ATGGAGCCTTATCCCATACTAAATTTAATACCACCACTCACAGGGAAGGC
AAGAAAGTACAGGAGCGCAGAAGAAGACCAACAGCTGGTCATGCAGCAAC
GCGCGAAGAGGCCGAGGCGGTGTGGTGAGGAGGTCATTGTGATGCTGCTG
ATGGTGCTGTTTGTGCTCGTCGTCTCGTCTGTGCAAGCGTTTGGGCCACC
ACCACTACCATGGACCTATATGCAGCCTCTTCATCGACCTGGCGGTGCGA
TCACAGGAAGAAGAAGAAGGATGACCCCGACGGTGACGTCGATGCAGAGC
AAGGACAGCTCGAGCACCACCCCTCCTACACCTCTAGTATGGTCCAACGT
GTTGCGCGACAAGTTGCTCCTAGGTGTGGAGCCCTCGCCGGACGTGTACG
CCATCCTTATCGTGTATTTTGTGCAAGGTGCCATCGGCTTGGCCCGCCTT
GCCACAACCTTCTACCTCAAGGACGACCTACACTTGTCCCCTGCGGAGTC
CGCCGCCCTCACAGGCATTTTTTCGACGCCTTGGCTGCTTAAACCTCTTT
ACGGCTTTTTATCCGACGGGTTTCCTTTGGGCGGGTATCGTCGTCGATCC
TACTTAGCGCTCTCTGGTCTCTTAGGAGCACTTTCCTATTTGGCTTTGGC
CTCCCCCGGCGTAGTGGACTCAGTGGGCACGGCCACGGTCGCCATCACGC
TGGGCTCGCTCTCGGTGGCGGTCAGTGATGTGGTGGCCGATTCTCTCGTG
GTAGAGAAGATTCAGGCAGCGGGCCCTGGGGGAGATCCCAAGCTAGCGGG
CGGCTTACAGTCCTTATGCTGGGGCAGCTCAGCCATGGGAGGGATTACAA
GTGCTTACTTCTCTGGGGTGTTGCTGGAAACGATCGGAACGAGGGGTTTG
TTTGGAATTACGGCCTCGTTACCCTTGTTGGTGACTTTAGTTTCGCTGTC
TATTCGGGAGACACGGCTGTCATTTGATTACAGCAGCTCTATCAGTCTGG
CCAAGGAGCAAGCCATGCTCTTGCGGTTAGCCCTCACGCAGAAATCAGTG
TACCTTCCCCTCTTCTTTCTGGTCTTGTGGCAAGGCAGCCCTTCCAGTGA
CTCGGCCTTCTTTTATTTCCTCACGAATGAGCTGCACATGCAGCCCGAGT
TCCTCGGCCGGGTGCGCTTAGGGACCAGCATCGCCTCCCTCGCTGGGGTG
TGGCTCTACCAGCGCTACCTGCGGGAGGTGCCGATTGCCAAAATCCTCTT
TTGGACCACGCTCGCTTCAGTACCGGTACGTTCACGGTGGATGGTCACTT
GTTTCAAATGTGCTTACAAGTGTTTGCAGGCTTACAAATCAGTGCGTGCT
TCCTTACTTCTTCCCGGCTTATCCTAGCATGATATTTATTAAACATTCTT
CATTGGTTCTTTTCACGTGGGTAGTTTCAATTACAAATGATCACCCGAAT
CTCCTCCTTTTCTTTCGTCCTTATTTTTTTTGAAACCACAGCTGGGGTTG
ACGCAACTTATCCTGGTGTACCACCTAAACACCGGTCTGGGGATCCCCAA
CGAGATCTTCACCTTCGGCGACAGTGTAGTGCTGACTGTACTCGGCCAGA
TAGCCTTCATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGTCCTCCAGGC
ATTGAGGGGACACTCTTTGCGACGTTGATGAGCGTGTTTAACGGTGCGGG
GGCTTTGGGCGCAGAGCTGGGGGCATTTTTGACGTCCGCGCTGGGTGTCA
CCGAGAATAATTTTCAGAATTTGGGTCTGCTAATCGCCATTTGCAACCTC
AGCACCCTTTTGTCTCTACCATTTTTGTCCTTGCTCCCAGCGGAAAAAAG
CAAGAGTGGCGAAGGGGGCGATGCACGAGGAGTTGAGCAGGAGGAACAGA
AGATGGAGGGACATGTCCACGAGACAAAAAATTAG
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Coding sequence (CDS) from alignment at chr10:524558..526492+

>NO10G01880.1 ID=NO10G01880.1|Name=NO10G01880.1|organism=Nannochloropsis oceanica|type=CDS|length=1719bp|location=Sequence derived from alignment at chr10:524558..526492+ (Nannochloropsis oceanica)
ATGGAGCCTTATCCCATACTAAATTTAATACCACCACTCACAGGGAAGGC
AAGAAAGTACAGGAGCGCAGAAGAAGACCAACAGCTGGTCATGCAGCAAC
GCGCGAAGAGGCCGAGGCGGTGTGGTGAGGAGGTCATTGTGATGCTGCTG
ATGGTGCTGTTTGTGCTCGTCGTCTCGTCTGTGCAAGCGTTTGGGCCACC
ACCACTACCATGGACCTATATGCAGCCTCTTCATCGACCTGGCGGTGCGA
TCACAGGAAGAAGAAGAAGGATGACCCCGACGGTGACGTCGATGCAGAGC
AAGGACAGCTCGAGCACCACCCCTCCTACACCTCTAGTATGGTCCAACGT
GTTGCGCGACAAGTTGCTCCTAGGTGTGGAGCCCTCGCCGGACGTGTACG
CCATCCTTATCGTGTATTTTGTGCAAGGTGCCATCGGCTTGGCCCGCCTT
GCCACAACCTTCTACCTCAAGGACGACCTACACTTGTCCCCTGCGGAGTC
CGCCGCCCTCACAGGCATTTTTTCGACGCCTTGGCTGCTTAAACCTCTTT
ACGGCTTTTTATCCGACGGGTTTCCTTTGGGCGGGTATCGTCGTCGATCC
TACTTAGCGCTCTCTGGTCTCTTAGGAGCACTTTCCTATTTGGCTTTGGC
CTCCCCCGGCGTAGTGGACTCAGTGGGCACGGCCACGGTCGCCATCACGC
TGGGCTCGCTCTCGGTGGCGGTCAGTGATGTGGTGGCCGATTCTCTCGTG
GTAGAGAAGATTCAGGCAGCGGGCCCTGGGGGAGATCCCAAGCTAGCGGG
CGGCTTACAGTCCTTATGCTGGGGCAGCTCAGCCATGGGAGGGATTACAA
GTGCTTACTTCTCTGGGGTGTTGCTGGAAACGATCGGAACGAGGGGTTTG
TTTGGAATTACGGCCTCGTTACCCTTGTTGGTGACTTTAGTTTCGCTGTC
TATTCGGGAGACACGGCTGTCATTTGATTACAGCAGCTCTATCAGTCTGG
CCAAGGAGCAAGCCATGCTCTTGCGGTTAGCCCTCACGCAGAAATCAGTG
TACCTTCCCCTCTTCTTTCTGGTCTTGTGGCAAGGCAGCCCTTCCAGTGA
CTCGGCCTTCTTTTATTTCCTCACGAATGAGCTGCACATGCAGCCCGAGT
TCCTCGGCCGGGTGCGCTTAGGGACCAGCATCGCCTCCCTCGCTGGGGTG
TGGCTCTACCAGCGCTACCTGCGGGAGGTGCCGATTGCCAAAATCCTCTT
TTGGACCACGCTCGCTTCAGTACCGCTGGGGTTGACGCAACTTATCCTGG
TGTACCACCTAAACACCGGTCTGGGGATCCCCAACGAGATCTTCACCTTC
GGCGACAGTGTAGTGCTGACTGTACTCGGCCAGATAGCCTTCATGCCGAC
GCTGGTCTTGGCTGCGCGTTTGTGTCCTCCAGGCATTGAGGGGACACTCT
TTGCGACGTTGATGAGCGTGTTTAACGGTGCGGGGGCTTTGGGCGCAGAG
CTGGGGGCATTTTTGACGTCCGCGCTGGGTGTCACCGAGAATAATTTTCA
GAATTTGGGTCTGCTAATCGCCATTTGCAACCTCAGCACCCTTTTGTCTC
TACCATTTTTGTCCTTGCTCCCAGCGGAAAAAAGCAAGAGTGGCGAAGGG
GGCGATGCACGAGGAGTTGAGCAGGAGGAACAGAAGATGGAGGGACATGT
CCACGAGACAAAAAATTAG
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Synonyms
Publications