NO10G01860.1, NO10G01860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01860.1
Unique NameNO10G01860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1054
Alignment locationchr10:520730..521966 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:520730..521966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G01860.1 vs.
Match: EWM25422.1 (Photosystem II PsbP, oxygen evolving complex [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 1.100e-57
Identity = 135/257 (52.53%), Postives = 170/257 (66.15%), Query Frame = 0
Query:    4 PPLQRFWASVATLWALFGLALSPALSNAYVLPSCCLSRQRFLFMNAGHRTGGVKPLSQSSSAWYSRADVFRGGLVLLPGAMLTCLAP--WGVRPVSAAEEEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQRGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQEGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAIITQMLASFQ 259
            P   R   S+ T+ AL  LA  P  S AY L +  LSR     + A  + G   P         SR+ V  GG+  + G+ L CL      ++PV AA+E      S TF+   +SS  F F YP++W  APKL+QTHQEEVTLKS    GFSAGVAVDPVRIE I+Q+G+P++VG RIV LEGKKEGV KVELL SAQEG++YTFDY VESTRG+NRFLA+AI+  +KL+VFT+Q+P+ AYE+NEA I++ML S Q
Sbjct:    9 PLHSRLCWSLVTMLALGILATFPTHSKAYTLAN--LSR-----LPAHKKCGAFFPRRPLVDRDLSRSQVLSGGISAISGSFLVCLGASFLQIKPVIAADEGSGDKGSPTFVTCASSSGIFRFLYPETWTSAPKLLQTHQEEVTLKSKNVLGFSAGVAVDPVRIESIQQSGSPSEVGARIVALEGKKEGVSKVELLGSAQEGDFYTFDYEVESTRGRNRFLARAIVADKKLIVFTIQIPMDAYEANEATISRMLQSLQ 258          
The following BLAST results are available for this feature:
BLAST of NO10G01860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25422.11.100e-5752.53Photosystem II PsbP, oxygen evolving complex [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01860NO10G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01860.1NO10G01860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01860.1.cds1NO10G01860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01860.1.cds2NO10G01860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01860.1.cds3NO10G01860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01860.1 ID=NO10G01860.1|Name=NO10G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1054bp
ACAGGTCTAGGCGCGAGGGACTGGGTGCAAGAGACCAGAAAAAAAGGAGA
AGCAGCTCGCAACAGCTCGACTCTTGACTGTCGGAGCCCGGACCACCTCT
TTACCACAACCACAGCCAAATTGAGGATGCCATTTCCGCCCTTACAACGT
TTCTGGGCCTCGGTAGCCACACTCTGGGCGCTATTTGGGCTCGCACTTTC
ACCGGCCCTTTCAAATGCCTATGTTCTCCCATCATGCTGCCTCAGCCGGC
AGCGGTTTCTATTCATGAATGCGGGGCACAGGACAGGAGGCGTGAAGCCT
TTATCCCAGTCTTCTTCAGCATGGTACAGTCGTGCTGACGTGTTTCGAGG
AGGGCTTGTACTCTTGCCAGGTGCCATGTTAACATGCTTAGCTCCATGGG
GAGTCCGACCTGTCTCAGCCGCCGAGGAGGAAAAGGAAAAGGTGGAATCC
TCCACCTTCATTCCTTTTGTCGCCTCCAGCAAGACCTTCACATTTGACTA
CCCCGACTCTTGGAAGCTGGCCCCCAAACTTGTGCAGACACATCAAGAAG
AGGTGACACTCAAAAGCACAGTCCAACGAGGCTTCTCCGCGGGAGTAGCG
GTGGACCCCGTCCGGATCGAGCGGATCGAGCAAACTGGCACGCCTGCCCA
AGTCGGTGGTCGCATTGTGAACCTGGAAGGGAAGAAGGAAGGCGTCCAAA
AGGTGGAGTTGCTGGACAGTGCGCAAGAGGGCAACTATTACACGTTCGAC
TACAGGGTGGAGTCGACGCGGGGCAAGAATCGCTTCCTGGCCAAGGCCAT
TATCTATGCCCAGAAGCTGGTTGTCTTCACCGTGCAGGTCCCCATCCCCG
CCTATGAGTCTAATGAGGCGATAATTACACAAATGCTTGCCTCTTTTCAA
GCACCACCACCGGCCGAGGCTAGGTGACGAATTAACCAGGCTTCAAGGGG
AGCAGACATTAAGGGTAAGGGAGCATGTATTATTTATTAGCCTTTAGAAC
AGGCTTAAATCAAAAGAAAGAAATAAGCTACGTCCGAGACGCAATTGATT
TTCG
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protein sequence of NO10G01860.1

>NO10G01860.1-protein ID=NO10G01860.1-protein|Name=NO10G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MPFPPLQRFWASVATLWALFGLALSPALSNAYVLPSCCLSRQRFLFMNAG
HRTGGVKPLSQSSSAWYSRADVFRGGLVLLPGAMLTCLAPWGVRPVSAAE
EEKEKVESSTFIPFVASSKTFTFDYPDSWKLAPKLVQTHQEEVTLKSTVQ
RGFSAGVAVDPVRIERIEQTGTPAQVGGRIVNLEGKKEGVQKVELLDSAQ
EGNYYTFDYRVESTRGKNRFLAKAIIYAQKLVVFTVQVPIPAYESNEAII
TQMLASFQAPPPAEAR*
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mRNA from alignment at chr10:520730..521966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01860.1 ID=NO10G01860.1|Name=NO10G01860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1237bp|location=Sequence derived from alignment at chr10:520730..521966- (Nannochloropsis oceanica)
ACAGGTCTAGGCGCGAGGGACTGGGTGCAAGAGACCAGAAAAAAAGGAGA AGCAGCTCGCAACAGCTCGACTCTTGACTGTCGGAGCCCGGACCACCTCT TTACCACAACCACAGCCAAATTGAGGATGCCATTTCCGCCCTTACAACGT TTCTGGGCCTCGGTAGCCACACTCTGGGCGCTATTTGGGCTCGCACTTTC ACCGGCCCTTTCAAATGCCTATGTTCTCCCATCATGCTGCCTCAGCCGGC AGCGGTTTCTATTCATGAATGCGGGGCACAGGACAGGAGGCGTGAAGCCT TTATCCCAGTCTTCTTCAGCATGGTACAGTCGTGCTGACGTGTTTCGAGG AGGGCTTGTACTCTTGCCAGGTGCCATGTTAACATGCTTAGCTCCATGGG GAGTCCGACCTGTCTCAGCCGCCGAGGAGGAAAAGGAAAAGGTGGAATCC TCCACCTTCATTCCTTTTGTCGCCTCCAGCAAGACCTTCACATTTGACTA CCCCGACTCTTGGAAGCTGGCCCCCAAACTTGTGCAGACACATCAAGAAG AGGTAAGAGGATGTGTGGTCATAATGGCCAGTCAATGAGGTGACCGAGGG TAAACGCATTTGCCCCCTGCCATACGCTTCCAATAGGTGACACTCAAAAG CACAGTCCAACGAGGCTTCTCCGCGGGAGTAGCGGTAAGTAGGAAGAGGG AAGAGTGGAAATAAAATGAGAAATGCAAGGCGATGGGGGCAGGAAAAGAA TATCCCACTTGGTTCCCCTAACTCGGTTCATAGGTGGACCCCGTCCGGAT CGAGCGGATCGAGCAAACTGGCACGCCTGCCCAAGTCGGTGGTCGCATTG TGAACCTGGAAGGGAAGAAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGAC AGTGCGCAAGAGGGCAACTATTACACGTTCGACTACAGGGTGGAGTCGAC GCGGGGCAAGAATCGCTTCCTGGCCAAGGCCATTATCTATGCCCAGAAGC TGGTTGTCTTCACCGTGCAGGTCCCCATCCCCGCCTATGAGTCTAATGAG GCGATAATTACACAAATGCTTGCCTCTTTTCAAGCACCACCACCGGCCGA GGCTAGGTGACGAATTAACCAGGCTTCAAGGGGAGCAGACATTAAGGGTA AGGGAGCATGTATTATTTATTAGCCTTTAGAACAGGCTTAAATCAAAAGA AAGAAATAAGCTACGTCCGAGACGCAATTGATTTTCG
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Coding sequence (CDS) from alignment at chr10:520730..521966-

>NO10G01860.1 ID=NO10G01860.1|Name=NO10G01860.1|organism=Nannochloropsis oceanica|type=CDS|length=801bp|location=Sequence derived from alignment at chr10:520730..521966- (Nannochloropsis oceanica)
ATGCCATTTCCGCCCTTACAACGTTTCTGGGCCTCGGTAGCCACACTCTG
GGCGCTATTTGGGCTCGCACTTTCACCGGCCCTTTCAAATGCCTATGTTC
TCCCATCATGCTGCCTCAGCCGGCAGCGGTTTCTATTCATGAATGCGGGG
CACAGGACAGGAGGCGTGAAGCCTTTATCCCAGTCTTCTTCAGCATGGTA
CAGTCGTGCTGACGTGTTTCGAGGAGGGCTTGTACTCTTGCCAGGTGCCA
TGTTAACATGCTTAGCTCCATGGGGAGTCCGACCTGTCTCAGCCGCCGAG
GAGGAAAAGGAAAAGGTGGAATCCTCCACCTTCATTCCTTTTGTCGCCTC
CAGCAAGACCTTCACATTTGACTACCCCGACTCTTGGAAGCTGGCCCCCA
AACTTGTGCAGACACATCAAGAAGAGGTGACACTCAAAAGCACAGTCCAA
CGAGGCTTCTCCGCGGGAGTAGCGGTGGACCCCGTCCGGATCGAGCGGAT
CGAGCAAACTGGCACGCCTGCCCAAGTCGGTGGTCGCATTGTGAACCTGG
AAGGGAAGAAGGAAGGCGTCCAAAAGGTGGAGTTGCTGGACAGTGCGCAA
GAGGGCAACTATTACACGTTCGACTACAGGGTGGAGTCGACGCGGGGCAA
GAATCGCTTCCTGGCCAAGGCCATTATCTATGCCCAGAAGCTGGTTGTCT
TCACCGTGCAGGTCCCCATCCCCGCCTATGAGTCTAATGAGGCGATAATT
ACACAAATGCTTGCCTCTTTTCAAGCACCACCACCGGCCGAGGCTAGGTG
A
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Synonyms
Publications