NO10G01840.1, NO10G01840.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G01840.1
Unique Name	NO10G01840.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4473
Alignment location	chr10:512428..517774 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:512428..517774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO10G01840.1 vs.
Match: EWM25382.1 (atp-binding cassette superfamily [Nannochloropsis gaditana])

HSP 1 Score: 1459.1 bits (3776), Expect = 0.000e+0
Identity = 754/991 (76.08%), Postives = 844/991 (85.17%), Query Frame = 0

Query:  247 RKALLKHVTMTVLPGEVAFVMGPSGAGKSTLLDALAGRIKNGIMSGHMYFNGRPRDASFYANSAYVRQDDVHIPNLTVEETLYFAARLRLGEEYTDTERRMRVNAVSDLLGLRTCLISMVGDAGIRGISGGQLKRLSIAVEIMNMPSLIFLDEPTSGLDSVMAHDVMTFTNRLADQNRTILATIHQPSSDTFALASKVILVTAGRVAFCGPASEAQAYFTSPRLGFSAATYTNPADFIIAVVSGAEVSTNLVIGAHNTDAKKLSELYESSAYFQAPLTNAPSTTDG-GLTRLPQHFPTSTTDQTLTLIRRFWIAQSRQWEFVVAQLGKNIIVASVCGAIFFGQGREISTPTFTNVSFNVSSLWYFAMLYTVLSCLQIIPHLFFYKVLYTRERSANVYSTFAYWAANAIVSVPLLIVSHVVFVEISYWMVGLYPNASIHFFALFVTFLNNLISFYCAQYIAAVSPSAEVALAMFPLVFLFLGSFAGFTIPLGELPAGWKWASYISYPRWTYEALIINEFENRLDRAAVLAFYSFDRFDKYFSLPILCAFIVFTNVLVYVGLSPAQSKLRFEGPTSPGDSPKKE-IIVVMEDPISPLSPTTLTLEDFKVRSAQRFPATAGLSLIFRDLQYSIGKSPERAARILKGVSGTVFPGQMCALMGGSGAGKSTLLDLLAYRKTGGYITGEYLIGGRTEKPASKWCSYVTQDSVHISLFTVQETLEYAALLRLDEKTSLQKRKERAVDVMKMLGLEDVADVLVGSSLLKGISGGQARRLSIGVEIMQLPDVIFLDEPTTGLDSQISHEVMSSVRNIANHNRTVVCTIHSPSEAVYNLFDSLLLLALGRQTYFGPVSDASAYFSQVELGWRMPMGKNPADFIMEANQGLLTGVDGSRRTIRELNQLFLSSANYTGIKNVIDKILLAKANQQQNERKQRNHGSEGHRTFQGRAAVAAVPLRIRGDSFMVTLLEPERYPRSTFAQMYILSHRQFRKAWKMKR 1236
            RK LLKH+TMTVLPGE+AFVMGPSGAGKSTLLDALAGRIK+G+MSGH+YFNGRPR + FY+NSAYVRQDDVHIPNLTV ETL+FAA+LRLG EYT  ER+ R+ AVSDLLGL +C++S+VGDAG+RGISGGQLKRLSIAVEIMNMPSLIFLDEPTSGLDSVMAHDVMTFTNRLADQNRTILATIHQPSS+T+ALASKVILV+AGR+ FCGPA+EAQ+YF S  LGFSA  + NPADFIIAVVSGAE S++   G  +TDAK LS+LYE+S YFQ P T +   +    +   P  FPTS T QT TL+ RFWIAQSRQWEFVVAQLGKN++VAS+CGAIFFGQGRE S  TF+NVSFNVSSLWYFAMLYTVLSCLQIIP LFF+ VLY RERSANVYSTFAYWAANAIV VPLL++SHV+FVEISYWMVGLYPNA+ H FAL VTFLNNLISFYCAQ IAA+SPSAEVALAMFPLVFLFLGSFAGFTIPLGELP GWKWASYISYPRWTY+ALIINEF+ R DR AVL FYSF  F+KY +LPIL AFIV  NV VY+GL P QS+L+FE  TSP +SPK + +IVV + P+   SP +LTL+DFK+RSAQRFP+T GLSL+FRDLQYS+GKSP+RAARILKGVSG VFPGQMCALMGGSGAGKSTLLDLLA+RKTGG+ITGEY IGG+ EKP+SKWCSYVTQD+VHISLFTV+ETLE+AALLRL E   ++KR+ERA DVMKMLGLEDVADV VG++L+KGISGGQARRLSIGVEIM LPDV+FLDEPTTGLDSQISHEVMSSVRNIANHNRTVVCTIHSPS+AVY LFDSLLLLALGRQTYFG    A  YFS + LGW MP+GKNPADF+MEANQGLL   DG+RRTIRELN LFL+S N   I   I++ L  +   +   ++Q           Q   AV  +P RIR DS   TL +PE YPRST AQMYIL+ RQFRKAWKM R
Sbjct:   27 RKELLKHITMTVLPGEIAFVMGPSGAGKSTLLDALAGRIKDGVMSGHIYFNGRPRSSDFYSNSAYVRQDDVHIPNLTVGETLFFAAQLRLGGEYTINERQSRIKAVSDLLGLNSCILSLVGDAGMRGISGGQLKRLSIAVEIMNMPSLIFLDEPTSGLDSVMAHDVMTFTNRLADQNRTILATIHQPSSETYALASKVILVSAGRIMFCGPANEAQSYFIS--LGFSAQMFGNPADFIIAVVSGAEPSSSSTTGTKDTDAKSLSDLYEASKYFQVPATRSQIHSGARNIGSQPHAFPTSVTSQTYTLVNRFWIAQSRQWEFVVAQLGKNVVVASICGAIFFGQGREKSLSTFSNVSFNVSSLWYFAMLYTVLSCLQIIPQLFFFGVLYNRERSANVYSTFAYWAANAIVCVPLLLLSHVIFVEISYWMVGLYPNAACHLFALLVTFLNNLISFYCAQCIAAISPSAEVALAMFPLVFLFLGSFAGFTIPLGELPPGWKWASYISYPRWTYQALIINEFQYRADRTAVLTFYSFTGFNKYLALPILAAFIVLMNVFVYIGLLPKQSRLQFENQTSPAESPKDDAVIVVKKPPVLLTSPKSLTLDDFKIRSAQRFPSTTGLSLMFRDLQYSVGKSPDRAARILKGVSGHVFPGQMCALMGGSGAGKSTLLDLLAHRKTGGFITGEYYIGGQAEKPSSKWCSYVTQDNVHISLFTVRETLEFAALLRLKEGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKGISGGQARRLSIGVEIMHLPDVLFLDEPTTGLDSQISHEVMSSVRNIANHNRTVVCTIHSPSKAVYELFDSLLLLALGRQTYFGSAEAAPTYFSLLTLGWCMPIGKNPADFLMEANQGLLVASDGTRRTIRELNHLFLNSRNCMDIDGQIEETLRIRLINRHRSKEQ-----------QWEKAV-DLPRRIRTDSIFATLTKPETYPRSTVAQMYILTMRQFRKAWKMVR 1003

The following BLAST results are available for this feature:

BLAST of NO10G01840.1 vs.

BLAST of NO10G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25382.1	0.000e+0	76.08	atp-binding cassette superfamily [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G01840	NO10G01840	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G01840.1	NO10G01840.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G01840.1.cds1	NO10G01840.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01840.1.cds2	NO10G01840.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01840.1.cds3	NO10G01840.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01840.1.cds4	NO10G01840.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01840.1.cds5	NO10G01840.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01840.1.cds6	NO10G01840.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01840.1.cds7	NO10G01840.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G01840.1.cds8	NO10G01840.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:512428..517774+
coding sequence from alignment at chr10:512428..517774+

mRNA sequence

>NO10G01840.1 ID=NO10G01840.1|Name=NO10G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=4473bp
ATGCTTCCTACAGATGATAATGATGCAAGCCATAGCAGCAAGGCCGATAA
TTCCGTGCAGCGCAGTAGCATCAGCAGGCCGAAATCTACGGCTATGGACC
GTTCACGTGATAAAGAACAAGGCTCGAGAACCAGTGTTCCCGCTGCTGGC
GCCGCCGCCTCCACAACGATGAGCATGACGCGTACTGGACGACTAAGTTT
TCACGATCGTGAAGTGCACATTCCACCGAACCCAAAGGATATGAAGACGA
CCGTAACGACAGCGGCAGACACGACAATAACGACGGCGGTGGCCTCTTCC
CAAGCCCTTCCCGGCCTGCCAGCAGACCTTCCCTCCTCGCCTGAAGACAA
CCCGGCTTCCTCCTCCACCGACGTCACAATCAATGATAATAACAACCCTC
GAAAGTCTGTCATCCTCAAATCCTTGCAAAGCATGATTGGGGGCGGTTCC
TTCCGCACCGACTACACCGTCGGCCAGCTCTCCCTTTCCAACACTATCAA
CGTAAGCGCCCGTTCCAAGATGGACATGTCCATTTTCCAGACCAAGAAGA
ACGGCTCCTGGGCAATACGAGGAGTCACACTTGTCACAGATAACCTTAGC
TACTTTGTGGAGAAGCAGAAAGGTAGCTGGTGGTCACGACACCTTGTCGC
TAATGCAAAGACTACGACAACTCCAACGCCCAATACCGGCACCACTACCA
CCGCAGCCCCCTCGACAAAGAGCGGCTCCGCGCCAACACGCAAGGCCTTG
CTAAAGCACGTGACCATGACGGTGCTCCCGGGTGAAGTTGCATTTGTCAT
GGGGCCCAGCGGCGCAGGCAAGTCCACCCTACTGGACGCACTGGCAGGAC
GCATCAAGAATGGTATCATGAGCGGGCACATGTATTTTAATGGCCGCCCT
CGAGACGCAAGCTTCTACGCCAATTCGGCATATGTTCGGCAAGATGATGT
ACACATTCCCAACTTGACTGTGGAGGAGACCTTGTACTTCGCGGCGCGGC
TGCGACTCGGGGAAGAGTACACGGACACCGAGCGACGTATGCGTGTCAAC
GCTGTCTCTGACCTCCTGGGCCTTAGAACCTGTCTGATCAGCATGGTGGG
GGACGCAGGAATTCGGGGCATTTCAGGAGGGCAGTTGAAGCGCCTGAGCA
TCGCGGTGGAGATAATGAATATGCCTAGCCTGATCTTCTTGGACGAGCCT
ACGAGTGGTTTGGACTCGGTGATGGCGCACGACGTCATGACCTTCACCAA
TCGCCTAGCCGACCAGAACCGGACCATCCTCGCCACAATTCACCAGCCTT
CCAGTGACACCTTCGCACTGGCCAGTAAGGTGATCCTGGTGACTGCCGGG
CGGGTGGCGTTTTGTGGGCCGGCGAGCGAGGCGCAGGCCTATTTCACTTC
CCCGCGCCTGGGCTTCTCGGCGGCCACATACACCAACCCGGCCGATTTTA
TCATAGCGGTGGTCAGCGGCGCGGAGGTATCAACCAACTTGGTTATTGGT
GCTCACAATACGGATGCTAAAAAGCTGAGCGAGCTCTATGAGTCGTCAGC
TTATTTCCAGGCGCCTCTCACCAATGCACCCTCCACAACCGACGGTGGCC
TTACGCGCCTGCCGCAGCACTTCCCAACCAGCACCACTGACCAGACCCTG
ACTCTGATACGGCGTTTTTGGATCGCACAAAGCCGGCAGTGGGAATTCGT
GGTGGCACAATTAGGCAAGAACATCATCGTGGCCTCGGTGTGTGGCGCCA
TCTTCTTTGGGCAAGGCCGAGAGATTAGCACCCCAACGTTCACCAACGTC
AGCTTCAACGTGAGCTCGCTCTGGTACTTCGCTATGCTTTACACGGTCTT
AAGTTGTCTACAAATCATCCCCCATTTGTTCTTCTATAAGGTCCTCTACA
CCCGGGAACGCAGCGCTAACGTTTATTCCACCTTTGCTTATTGGGCTGCC
AACGCCATCGTCAGCGTCCCTCTGCTTATCGTCTCCCACGTGGTGTTTGT
TGAGATCAGCTACTGGATGGTGGGGCTTTACCCAAACGCTTCCATCCATT
TTTTTGCCTTATTTGTAACCTTCTTGAATAATCTTATCTCCTTCTACTGC
GCCCAGTACATTGCCGCCGTCTCTCCCAGCGCTGAAGTGGCCTTGGCAAT
GTTTCCGCTGGTTTTTCTTTTTCTCGGCAGCTTTGCAGGCTTTACGATCC
CCCTTGGAGAGCTACCAGCGGGCTGGAAGTGGGCGTCTTACATTTCGTAC
CCACGCTGGACGTACGAGGCCCTTATCATCAACGAGTTTGAAAACCGACT
GGACCGAGCTGCGGTCCTGGCCTTTTATAGCTTCGACCGATTCGACAAGT
ACTTCTCCCTGCCTATCCTTTGCGCATTTATTGTCTTCACAAACGTATTG
GTCTACGTTGGCCTCTCGCCTGCTCAGTCGAAGCTACGCTTCGAAGGGCC
GACCTCTCCGGGAGACTCACCGAAGAAAGAGATTATAGTGGTAATGGAGG
ATCCAATCTCGCCACTTTCTCCCACGACACTCACGCTTGAAGACTTTAAG
GTGCGTTCCGCGCAGCGCTTTCCCGCAACCGCGGGCCTGAGCCTGATCTT
TCGGGATCTGCAATATTCTATCGGAAAGTCCCCCGAGCGGGCGGCCCGCA
TCCTTAAGGGAGTGAGTGGAACCGTCTTTCCCGGGCAGATGTGCGCCTTG
ATGGGTGGCAGTGGAGCGGGAAAATCGACGCTGCTGGACTTGCTGGCCTA
CCGTAAGACAGGTGGCTATATCACGGGCGAGTACCTCATTGGGGGGCGAA
CAGAGAAGCCAGCCTCCAAGTGGTGCAGCTATGTGACCCAGGACAGCGTT
CATATATCTCTTTTTACGGTGCAGGAGACGCTTGAGTACGCTGCCCTTTT
GCGGCTGGACGAGAAAACGTCCCTGCAGAAGAGAAAGGAGCGTGCGGTGG
ATGTGATGAAGATGTTGGGTTTGGAGGATGTGGCTGATGTGTTGGTGGGC
AGCTCGCTGCTGAAGGGAATTTCCGGGGGGCAAGCACGGCGACTTTCCAT
TGGGGTGGAGATCATGCAATTGCCTGATGTCATTTTCCTCGATGAACCAA
CGACGGGCCTAGATTCCCAAATCTCCCACGAGGTTATGTCATCAGTCCGG
AATATCGCCAACCACAACCGCACCGTCGTCTGCACCATCCATTCCCCTTC
GGAAGCCGTATACAACCTCTTCGACTCGCTCCTCCTCCTAGCGCTCGGCC
GACAGACTTACTTTGGTCCCGTGAGTGATGCCTCTGCCTACTTTAGCCAG
GTCGAACTCGGCTGGCGTATGCCGATGGGCAAAAATCCCGCTGACTTTAT
AATGGAAGCGAACCAAGGCTTGCTCACCGGTGTCGATGGCTCGCGGCGCA
CTATTCGAGAGCTGAATCAGCTGTTTTTGAGCTCCGCGAACTACACCGGC
ATCAAAAACGTCATCGACAAGATTCTCCTCGCCAAGGCGAATCAGCAGCA
GAATGAGAGGAAGCAGAGGAACCATGGCAGTGAAGGACATAGGACATTCC
AAGGACGAGCCGCTGTGGCGGCAGTACCTCTAAGGATCCGAGGCGACAGC
TTCATGGTCACGCTCCTCGAGCCCGAGAGATACCCGCGGTCTACCTTTGC
CCAGATGTACATCTTGAGTCACCGGCAGTTTCGCAAGGCCTGGAAAATGA
AACGCGACGTGTTCTACAGCATGCTCCGCAACATTTTAGTGGCCGTCTTT
CACGGGAGCCTCTACACGAACTTGTCGCCGGGCGCCATCCAGTCGCGGCT
ATCTCTCCTTTTCTTCGCCATTATGTTCGTTATGATGGCCAACCAGTCCT
TCATTCCCAATGTTACTGATGACCGCCTGCTCTTTTACCGCGAACGAGGA
GCGGGCGTGTACGGCACTGTGCCCTACTGGTTCAGCTCCTCCTTGGCCTA
TATTCCCCAGTGTGCCCTCGCTAGCATCACCTACTGCACCGTCGTCTACA
AGATGTCCGGGCTGAACGCCGCTGCAGGCGCCTTTGGTTACTTTTGCCTG
GTCGTGACCATGTGCGGGCTCTGCGGCATGTACTTCTGCCAACTGGTCTC
GTTGGCGTCCCCCAACTCCCAAATCGCTGTCTCCGTCTTCCCCGCGGCGC
TATTTTTGGTTGTAGCTTTTGCGGGCTTCGTTGTCCGGTTGCCTTCCTTG
CCTGACTGGTTGGGTTCGTGGGCACCGATCATTAGTTTCGCCCGGTGGGG
GTTTCAGGGGTTGGTCATCAACGAGTTTAAGGGCAACGAGAAGATCGACT
ATTACGAGATCATTCAGATGCAGATTCCCGAACCCTATCAAGCCTTTATC
GAAAACTTTGGGTTTGAAGGCTATTCGAAGTACGACTCACTGCCTATTCT
TGCCATATGTCTGGCCATTTTGTGGCTAGCCACCATAATTCCCATCAAAT
TCGTGTCGTTTGAGAAGCGATGA

protein sequence of NO10G01840.1

>NO10G01840.1-protein ID=NO10G01840.1-protein|Name=NO10G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1491bp
MLPTDDNDASHSSKADNSVQRSSISRPKSTAMDRSRDKEQGSRTSVPAAG
AAASTTMSMTRTGRLSFHDREVHIPPNPKDMKTTVTTAADTTITTAVASS
QALPGLPADLPSSPEDNPASSSTDVTINDNNNPRKSVILKSLQSMIGGGS
FRTDYTVGQLSLSNTINVSARSKMDMSIFQTKKNGSWAIRGVTLVTDNLS
YFVEKQKGSWWSRHLVANAKTTTTPTPNTGTTTTAAPSTKSGSAPTRKAL
LKHVTMTVLPGEVAFVMGPSGAGKSTLLDALAGRIKNGIMSGHMYFNGRP
RDASFYANSAYVRQDDVHIPNLTVEETLYFAARLRLGEEYTDTERRMRVN
AVSDLLGLRTCLISMVGDAGIRGISGGQLKRLSIAVEIMNMPSLIFLDEP
TSGLDSVMAHDVMTFTNRLADQNRTILATIHQPSSDTFALASKVILVTAG
RVAFCGPASEAQAYFTSPRLGFSAATYTNPADFIIAVVSGAEVSTNLVIG
AHNTDAKKLSELYESSAYFQAPLTNAPSTTDGGLTRLPQHFPTSTTDQTL
TLIRRFWIAQSRQWEFVVAQLGKNIIVASVCGAIFFGQGREISTPTFTNV
SFNVSSLWYFAMLYTVLSCLQIIPHLFFYKVLYTRERSANVYSTFAYWAA
NAIVSVPLLIVSHVVFVEISYWMVGLYPNASIHFFALFVTFLNNLISFYC
AQYIAAVSPSAEVALAMFPLVFLFLGSFAGFTIPLGELPAGWKWASYISY
PRWTYEALIINEFENRLDRAAVLAFYSFDRFDKYFSLPILCAFIVFTNVL
VYVGLSPAQSKLRFEGPTSPGDSPKKEIIVVMEDPISPLSPTTLTLEDFK
VRSAQRFPATAGLSLIFRDLQYSIGKSPERAARILKGVSGTVFPGQMCAL
MGGSGAGKSTLLDLLAYRKTGGYITGEYLIGGRTEKPASKWCSYVTQDSV
HISLFTVQETLEYAALLRLDEKTSLQKRKERAVDVMKMLGLEDVADVLVG
SSLLKGISGGQARRLSIGVEIMQLPDVIFLDEPTTGLDSQISHEVMSSVR
NIANHNRTVVCTIHSPSEAVYNLFDSLLLLALGRQTYFGPVSDASAYFSQ
VELGWRMPMGKNPADFIMEANQGLLTGVDGSRRTIRELNQLFLSSANYTG
IKNVIDKILLAKANQQQNERKQRNHGSEGHRTFQGRAAVAAVPLRIRGDS
FMVTLLEPERYPRSTFAQMYILSHRQFRKAWKMKRDVFYSMLRNILVAVF
HGSLYTNLSPGAIQSRLSLLFFAIMFVMMANQSFIPNVTDDRLLFYRERG
AGVYGTVPYWFSSSLAYIPQCALASITYCTVVYKMSGLNAAAGAFGYFCL
VVTMCGLCGMYFCQLVSLASPNSQIAVSVFPAALFLVVAFAGFVVRLPSL
PDWLGSWAPIISFARWGFQGLVINEFKGNEKIDYYEIIQMQIPEPYQAFI
ENFGFEGYSKYDSLPILAICLAILWLATIIPIKFVSFEKR*

mRNA from alignment at chr10:512428..517774+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G01840.1 ID=NO10G01840.1|Name=NO10G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=5347bp|location=Sequence derived from alignment at chr10:512428..517774+ (Nannochloropsis oceanica)
ATGCTTCCTACAGATGATAATGATGCAAGCCATAGCAGCAAGGCCGATAA
TTCCGTGCAGCGCAGTAGCATCAGCAGGCCGAAATCTACGGCTATGGACC
GTTCACGTGATAAAGAACAAGGCTCGAGAACCAGTGTTCCCGCTGCTGGC
GCCGCCGCCTCCACAACGATGAGCATGACGCGTACTGGACGACTAAGTTT
TCACGATCGTGAAGTGCACATTCCACCGAACCCAAAGGATATGAAGACGA
CCGTAACGACAGCGGCAGACACGACAATAACGACGGCGGTGGCCTCTTCC
CAAGCCCTTCCCGGCCTGCCAGCAGACCTTCCCTCCTCGCCTGAAGACAA
CCCGGCTTCCTCCTCCACCGACGTCACAATCAATGATAATAACAACCCTC
GAAAGTCTGTCATCCTCAAATCCTTGCAAAGCATGATTGGGGGCGGTTCC
TTCCGCACCGACTACACCGTCGGCCAGCTCTCCCTTTCCAACACTATCAA
CGTAAGCGCCCGTTCCAAGATGGACATGTCCATTTTCCAGACCAAGAAGA
ACGGCTCCTGGGCAATACGAGGAGTCACACTTGTCACAGATAACCTTAGC
TACTTTGTGGAGAAGCAGAAAGGTAGCTGGTGGTCACGACACCTTGTCGC
TAATGCAAAGACTACGACAACTCCAACGCCCAATACCGGCACCACTACCA
CCGCAGCCCCCTCGACAAAGAGCGGCTCCGCGCCAACACGCAAGGCCTTG
CTAAAGCACGTGACCATGACGGTGCTCCCGGGTGAAGTTGCATTTGTCAT
GGGGCCCAGCGGCGCAGGCAAGTCCACCCTACTGGACGCACTGGCAGGAC
GCATCAAGAATGGTATCATGAGCGGGCACATGTATTTTAATGGCCGCCCT
CGAGACGCAAGCTTCTACGCCAATTCGGCATATGTTCGGCAAGATGATGT
ACACATTCCCAACTTGACTGTGGAGGAGACCTTGTACTTCGCGGCGCGGC
TGCGACTCGGGGAAGAGTACACGGACACCGAGCGACGTATGCGTGTCAAC
GCTGTCTCTGACCTCCTGGGCCTTAGAACCTGTCTGATCAGCATGGTGGG
GGACGCAGGAATTCGGGGCATTTCAGGAGGGCAGTTGAAGCGCCTGAGCA
TCGCGGTGGAGATAATGAATATGCCTAGCCTGATCTTCTTGGACGAGCCT
ACGAGTGGTTTGGACTCGGTGATGGCGCACGACGTCATGACCTTCACCAA
TCGCCTAGCCGACCAGAACCGGACCATCCTCGCCACAATTCACCAGCCTT
CCAGTGACACCTTCGCACTGGCCAGTAAGGTGATCCTGGTGACTGCCGGG
CGGGTGGCGTTTTGTGGGCCGGCGAGCGAGGCGCAGGCCTATTTCACTTC
CCCGCGCCTGGGCTTCTCGGCGGCCACATACACCAACCCGGCCGATTTTA
TCATAGCGGTGGTCAGCGGCGCGGAGGTATCAACCAACTTGGTTATTGGT
GCTCACAATACGGATGCTAAAAAGCTGAGCGAGCTCTATGAGTCGTCAGC
TTATTTCCAGGCGCCTCTCACCAATGCACCCTCCACAACCGACGGTGGCC
TTACGCGCCTGCCGCAGCACTTCCCAACCAGCACCACTGACCAGACCCTG
ACTCTGATACGGCGTTTTTGGATCGCACAAAGCCGGCAGTGGGAATTCGT
GGTGGCACAATTAGGCAAGAACATCATCGTGGCCTCGGTGTGTGGCGCCA
TCTTCTTTGGGCAAGGCCGAGAGATTAGCACCCCAACGTTCACCAACGTC
AGCTTCAACGTGAGCTCGCTCTGGTACTTCGCTATGCTTTACACGGTCTT
AAGTTGTCTACAAATCATCCCCCATTTGTTCTTCTATAAGGTCCTCTACA
CCCGGGAACGCAGCGCTAACGTTTATTCCACCTTTGCTTATTGGGCTGCC
AACGCCATCGTCAGCGTCCCTCTGCTTATCGTCTCCCACGTGGTGTTTGT
TGAGATCAGCTACTGGATGGTGGGGCTTTACCCAAACGCTTCCATCCATT
TTTTTGCCTTATTTGTAACCTTCTTGAATAATCTTATCTCCTTCTACTGC
GCCCAGTACATTGCCGCCGTCTCTCCCAGCGCTGAAGTGGCCTTGGCAAT
GTTTCCGCTGGTTTTTCTTTTTCTCGGCAGCTTTGCAGGCTTTACGATCC
CCCTTGGAGAGCTACCAGCGGGTAGGTTTCTCGTTTCACTAGATAGTGTT
GTCGAGAGAATGAATTTTTGTGTGGACGTCAAACCCTCATCCTTCATCTT
TATAAAATTTCCACCTCTTCCACTCTTGCAGGCTGGAAGTGGGCGTCTTA
CATTTCGTACCCACGCTGGACGTACGAGGCCCTTATCATCAACGAGTTTG
AAAACCGACTGGACCGAGCTGCGGTCCTGGCCTTTTATAGCTTCGACCGA
TTCGACAAGTACTTCTCCCTGCCTATCCTTTGCGCATTTATTGTCTTCAC
AAACGTATTGGTCTACGTTGGCCTCTCGCCTGCTCAGTCGAAGCTACGCT
TCGAAGGGCCGACCTCTCCGGGAGACTCACCGAAGAAAGAGATTATAGTG
GTAATGGAGGATCCAATCTCGCCACTTTCTCCCACGACACTCACGGTATG
TCCATCCCGTTGAGCGTGACTGATTGTCGTCTTTTTGTCCCTCTCCATCA
TTTATCGAAATTCCTCTCTCGGCATTAGTTCACGCAACCCCTTCTTGCGC
GCCCCCGCCTTTATCTTTTTGATTCTTCCAAATTTTTTGTTCTCACATTT
TCTTCTTTTAAATTGCAGCTTGAAGACTTTAAGGTGCGTTCCGCGCAGCG
CTTTCCCGCAACCGCGGGCCTGAGCCTGATCTTTCGGGATCTGCAATATT
CTATCGGAAAGTCCCCCGAGCGGGCGGCCCGCATCCTTAAGGGAGTGAGT
GGAACCGTCTTTCCCGGGCAGATGTGCGCCTTGATGGGTGGCAGTGGAGC
GGGAAAATCGACGCTGCTGGACTTGCTGGCCTACCGTAAGACAGGTGGCT
ATATCACGGGCGAGTACCTCATTGGGGGGCGAACAGAGAAGCCAGCCTCC
AAGTGGTGCAGCTATGTGACCCAGGACAGCGTTCATATATCTCTTTTTAC
GGTGCAGGAGACGCTTGAGTACGCTGCCCTTTTGCGGCTGGACGAGAAAA
CGTCCCTGCAGAAGAGAAAGGAGCGTGCGGTGGATGTGATGAAGATGTTG
GGTTTGGAGGATGTGGCTGATGTGTTGGTGGGCAGCTCGCTGCTGAAGGG
AATTTCCGGGGGGCAAGCACGGCGACTTTCCATTGGGGTGGAGATCATGC
AATTGCCTGATGGTAGGTGCATTTTCGATCGTTTTTAAAATATCTAAATT
GTCGTGCGCTCGTTTTGCTGCTAGTTCCCTAATGCTCGGGTGAGGGAAAC
TTGGTATCACGACACTGTACGTGTAGACCTCCTTATATGACCTTTTTTCA
TTAATCTCATCCCCCCTCATCCTTCCCTCATCGATGTAGTCATTTTCCTC
GATGAACCAACGACGGGCCTAGATTCCCAAATCTCCCACGAGGTAACTAC
TGTCGCAAGCACGGGAGGGAGGCAGACCGGAAGGGGAAAACGTTACCGTC
AATGTCATAAATATTACTCTTATCTGGCCTGCACACTCACATATTTCTGT
ACATCTTCTCTCGTAACTATATTCTCCTCCATAAGGTTATGTCATCAGTC
CGGAATATCGCCAACCACAACCGCACCGTCGTCTGCACCATCCATTCCCC
TTCGGAAGCCGTATACAACCTCTTCGACTCGCTCCTCCTCCTAGCGCTCG
GCCGACAGACTTACTTTGGTCCCGTGAGTGATGCCTCTGCCTACTTTAGC
CAGGTCGAACTCGGCTGGCGTATGCCGATGGGCAAAAATCCCGCTGACTT
TATAATGGAAGCGAACCAAGGCTTGCTCACCGGTGTCGATGGCTCGCGGC
GCACTATTCGAGAGCTGAATCAGCTGTTTTTGAGCTCCGCGAACTACACC
GGCATCAAAAACGTCATCGACAAGATTCTCCTCGCCAAGGCGAATCAGCA
GCAGAATGAGAGGAAGCAGAGGAACCATGGCAGTGAAGGACATAGGACAT
TCCAAGGACGAGCCGCTGTGGCGGCAGTACCTCTAAGGATCCGAGGCGAC
AGCTTCATGGTCACGCTCCTCGAGCCCGAGAGATACCCGCGGTCTACCTT
TGCCCAGATGTACATCTTGAGTCACCGGCAGTTTCGCAAGGCCTGGAAAA
TGGTATATCTGAGCTTCACTTTAGCGCGGGAAAAAGGGAGATTTATATTT
CTGTAAATGATACTGACACGCTCAATTTTTCACTTTCCCCCCCCTCCTTC
GTTGACCCTTTCCCCATACAGAAACGCGACGTGTTCTACAGCATGCTCCG
CAACATTTTAGTGGCCGTCTTTCACGGGAGCCTCTACACGAACTTGTCGC
CGGGCGCCATCCAGTCGCGGCTATCTCTCCTTTTCTTCGCCATTATGTTC
GTTATGATGGCCAACCAGTCCTTCATTCCCAAGTACGTCTCTCTTTTAAA
CCACATAGTCAATCCTTCGGCCCCAAACTTACTTGTCTTCACCGTCAACT
CACTAACAGTGTTACTGATGACCGCCTGCTCTTTTACCGCGAACGAGGAG
CGGGCGTGTACGGCACTGTGCCCTACTGGTTCAGCTCCTCCTTGGCCTAT
ATTCCCCAGTGTGCCCTCGCTAGCATCACCTACTGCACCGTCGTCTACAA
GATGTCCGGGCTGAACGCCGCTGCAGGTACGTAAGGAGCGAACAAAGGAG
ATGAGCCCCTCCTAAATAATTGTACGCGTATTCACTTTCTCGACAAAACA
GGCGCCTTTGGTTACTTTTGCCTGGTCGTGACCATGTGCGGGCTCTGCGG
CATGTACTTCTGCCAACTGGTCTCGTTGGCGTCCCCCAACTCCCAAATCG
CTGTCTCCGTCTTCCCCGCGGCGCTATTTTTGGTTGTAGCTTTTGCGGGC
TTCGTTGTCCGGTTGCCTTCCTTGCCTGACTGGTTGGGTTCGTGGGCACC
GATCATTAGTTTCGCCCGGTGGGGGTTTCAGGGGTTGGTCATCAACGAGT
TTAAGGGCAACGAGAAGATCGACTATTACGAGATCATTCAGATGCAGATT
CCCGAACCCTATCAAGCCTTTATCGAAAACTTTGGGTTTGAAGGCTATTC
GAAGTACGACTCACTGCCTATTCTTGCCATATGTCTGGCCATTTTGTGGC
TAGCCACCATAATTCCCATCAAATTCGTGTCGTTTGAGAAGCGATGA

Coding sequence (CDS) from alignment at chr10:512428..517774+

>NO10G01840.1 ID=NO10G01840.1|Name=NO10G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=4473bp|location=Sequence derived from alignment at chr10:512428..517774+ (Nannochloropsis oceanica)
ATGCTTCCTACAGATGATAATGATGCAAGCCATAGCAGCAAGGCCGATAA
TTCCGTGCAGCGCAGTAGCATCAGCAGGCCGAAATCTACGGCTATGGACC
GTTCACGTGATAAAGAACAAGGCTCGAGAACCAGTGTTCCCGCTGCTGGC
GCCGCCGCCTCCACAACGATGAGCATGACGCGTACTGGACGACTAAGTTT
TCACGATCGTGAAGTGCACATTCCACCGAACCCAAAGGATATGAAGACGA
CCGTAACGACAGCGGCAGACACGACAATAACGACGGCGGTGGCCTCTTCC
CAAGCCCTTCCCGGCCTGCCAGCAGACCTTCCCTCCTCGCCTGAAGACAA
CCCGGCTTCCTCCTCCACCGACGTCACAATCAATGATAATAACAACCCTC
GAAAGTCTGTCATCCTCAAATCCTTGCAAAGCATGATTGGGGGCGGTTCC
TTCCGCACCGACTACACCGTCGGCCAGCTCTCCCTTTCCAACACTATCAA
CGTAAGCGCCCGTTCCAAGATGGACATGTCCATTTTCCAGACCAAGAAGA
ACGGCTCCTGGGCAATACGAGGAGTCACACTTGTCACAGATAACCTTAGC
TACTTTGTGGAGAAGCAGAAAGGTAGCTGGTGGTCACGACACCTTGTCGC
TAATGCAAAGACTACGACAACTCCAACGCCCAATACCGGCACCACTACCA
CCGCAGCCCCCTCGACAAAGAGCGGCTCCGCGCCAACACGCAAGGCCTTG
CTAAAGCACGTGACCATGACGGTGCTCCCGGGTGAAGTTGCATTTGTCAT
GGGGCCCAGCGGCGCAGGCAAGTCCACCCTACTGGACGCACTGGCAGGAC
GCATCAAGAATGGTATCATGAGCGGGCACATGTATTTTAATGGCCGCCCT
CGAGACGCAAGCTTCTACGCCAATTCGGCATATGTTCGGCAAGATGATGT
ACACATTCCCAACTTGACTGTGGAGGAGACCTTGTACTTCGCGGCGCGGC
TGCGACTCGGGGAAGAGTACACGGACACCGAGCGACGTATGCGTGTCAAC
GCTGTCTCTGACCTCCTGGGCCTTAGAACCTGTCTGATCAGCATGGTGGG
GGACGCAGGAATTCGGGGCATTTCAGGAGGGCAGTTGAAGCGCCTGAGCA
TCGCGGTGGAGATAATGAATATGCCTAGCCTGATCTTCTTGGACGAGCCT
ACGAGTGGTTTGGACTCGGTGATGGCGCACGACGTCATGACCTTCACCAA
TCGCCTAGCCGACCAGAACCGGACCATCCTCGCCACAATTCACCAGCCTT
CCAGTGACACCTTCGCACTGGCCAGTAAGGTGATCCTGGTGACTGCCGGG
CGGGTGGCGTTTTGTGGGCCGGCGAGCGAGGCGCAGGCCTATTTCACTTC
CCCGCGCCTGGGCTTCTCGGCGGCCACATACACCAACCCGGCCGATTTTA
TCATAGCGGTGGTCAGCGGCGCGGAGGTATCAACCAACTTGGTTATTGGT
GCTCACAATACGGATGCTAAAAAGCTGAGCGAGCTCTATGAGTCGTCAGC
TTATTTCCAGGCGCCTCTCACCAATGCACCCTCCACAACCGACGGTGGCC
TTACGCGCCTGCCGCAGCACTTCCCAACCAGCACCACTGACCAGACCCTG
ACTCTGATACGGCGTTTTTGGATCGCACAAAGCCGGCAGTGGGAATTCGT
GGTGGCACAATTAGGCAAGAACATCATCGTGGCCTCGGTGTGTGGCGCCA
TCTTCTTTGGGCAAGGCCGAGAGATTAGCACCCCAACGTTCACCAACGTC
AGCTTCAACGTGAGCTCGCTCTGGTACTTCGCTATGCTTTACACGGTCTT
AAGTTGTCTACAAATCATCCCCCATTTGTTCTTCTATAAGGTCCTCTACA
CCCGGGAACGCAGCGCTAACGTTTATTCCACCTTTGCTTATTGGGCTGCC
AACGCCATCGTCAGCGTCCCTCTGCTTATCGTCTCCCACGTGGTGTTTGT
TGAGATCAGCTACTGGATGGTGGGGCTTTACCCAAACGCTTCCATCCATT
TTTTTGCCTTATTTGTAACCTTCTTGAATAATCTTATCTCCTTCTACTGC
GCCCAGTACATTGCCGCCGTCTCTCCCAGCGCTGAAGTGGCCTTGGCAAT
GTTTCCGCTGGTTTTTCTTTTTCTCGGCAGCTTTGCAGGCTTTACGATCC
CCCTTGGAGAGCTACCAGCGGGCTGGAAGTGGGCGTCTTACATTTCGTAC
CCACGCTGGACGTACGAGGCCCTTATCATCAACGAGTTTGAAAACCGACT
GGACCGAGCTGCGGTCCTGGCCTTTTATAGCTTCGACCGATTCGACAAGT
ACTTCTCCCTGCCTATCCTTTGCGCATTTATTGTCTTCACAAACGTATTG
GTCTACGTTGGCCTCTCGCCTGCTCAGTCGAAGCTACGCTTCGAAGGGCC
GACCTCTCCGGGAGACTCACCGAAGAAAGAGATTATAGTGGTAATGGAGG
ATCCAATCTCGCCACTTTCTCCCACGACACTCACGCTTGAAGACTTTAAG
GTGCGTTCCGCGCAGCGCTTTCCCGCAACCGCGGGCCTGAGCCTGATCTT
TCGGGATCTGCAATATTCTATCGGAAAGTCCCCCGAGCGGGCGGCCCGCA
TCCTTAAGGGAGTGAGTGGAACCGTCTTTCCCGGGCAGATGTGCGCCTTG
ATGGGTGGCAGTGGAGCGGGAAAATCGACGCTGCTGGACTTGCTGGCCTA
CCGTAAGACAGGTGGCTATATCACGGGCGAGTACCTCATTGGGGGGCGAA
CAGAGAAGCCAGCCTCCAAGTGGTGCAGCTATGTGACCCAGGACAGCGTT
CATATATCTCTTTTTACGGTGCAGGAGACGCTTGAGTACGCTGCCCTTTT
GCGGCTGGACGAGAAAACGTCCCTGCAGAAGAGAAAGGAGCGTGCGGTGG
ATGTGATGAAGATGTTGGGTTTGGAGGATGTGGCTGATGTGTTGGTGGGC
AGCTCGCTGCTGAAGGGAATTTCCGGGGGGCAAGCACGGCGACTTTCCAT
TGGGGTGGAGATCATGCAATTGCCTGATGTCATTTTCCTCGATGAACCAA
CGACGGGCCTAGATTCCCAAATCTCCCACGAGGTTATGTCATCAGTCCGG
AATATCGCCAACCACAACCGCACCGTCGTCTGCACCATCCATTCCCCTTC
GGAAGCCGTATACAACCTCTTCGACTCGCTCCTCCTCCTAGCGCTCGGCC
GACAGACTTACTTTGGTCCCGTGAGTGATGCCTCTGCCTACTTTAGCCAG
GTCGAACTCGGCTGGCGTATGCCGATGGGCAAAAATCCCGCTGACTTTAT
AATGGAAGCGAACCAAGGCTTGCTCACCGGTGTCGATGGCTCGCGGCGCA
CTATTCGAGAGCTGAATCAGCTGTTTTTGAGCTCCGCGAACTACACCGGC
ATCAAAAACGTCATCGACAAGATTCTCCTCGCCAAGGCGAATCAGCAGCA
GAATGAGAGGAAGCAGAGGAACCATGGCAGTGAAGGACATAGGACATTCC
AAGGACGAGCCGCTGTGGCGGCAGTACCTCTAAGGATCCGAGGCGACAGC
TTCATGGTCACGCTCCTCGAGCCCGAGAGATACCCGCGGTCTACCTTTGC
CCAGATGTACATCTTGAGTCACCGGCAGTTTCGCAAGGCCTGGAAAATGA
AACGCGACGTGTTCTACAGCATGCTCCGCAACATTTTAGTGGCCGTCTTT
CACGGGAGCCTCTACACGAACTTGTCGCCGGGCGCCATCCAGTCGCGGCT
ATCTCTCCTTTTCTTCGCCATTATGTTCGTTATGATGGCCAACCAGTCCT
TCATTCCCAATGTTACTGATGACCGCCTGCTCTTTTACCGCGAACGAGGA
GCGGGCGTGTACGGCACTGTGCCCTACTGGTTCAGCTCCTCCTTGGCCTA
TATTCCCCAGTGTGCCCTCGCTAGCATCACCTACTGCACCGTCGTCTACA
AGATGTCCGGGCTGAACGCCGCTGCAGGCGCCTTTGGTTACTTTTGCCTG
GTCGTGACCATGTGCGGGCTCTGCGGCATGTACTTCTGCCAACTGGTCTC
GTTGGCGTCCCCCAACTCCCAAATCGCTGTCTCCGTCTTCCCCGCGGCGC
TATTTTTGGTTGTAGCTTTTGCGGGCTTCGTTGTCCGGTTGCCTTCCTTG
CCTGACTGGTTGGGTTCGTGGGCACCGATCATTAGTTTCGCCCGGTGGGG
GTTTCAGGGGTTGGTCATCAACGAGTTTAAGGGCAACGAGAAGATCGACT
ATTACGAGATCATTCAGATGCAGATTCCCGAACCCTATCAAGCCTTTATC
GAAAACTTTGGGTTTGAAGGCTATTCGAAGTACGACTCACTGCCTATTCT
TGCCATATGTCTGGCCATTTTGTGGCTAGCCACCATAATTCCCATCAAAT
TCGTGTCGTTTGAGAAGCGATGA

Synonyms

Publications