NO10G01740.1, NO10G01740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01740.1
Unique NameNO10G01740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length918
Alignment locationchr10:484902..486385 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:484902..486385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01740.1 vs.
Match: EWM25343.1 (subfamily member 9 [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 1.200e-89
Identity = 190/272 (69.85%), Postives = 215/272 (79.04%), Query Frame = 0 
Query:    1 MSSPQAQINQAFGTKKTLYEILGVPADATVAVIRKAYFKMALTCHPDKCPDDPGANARFQALSIIHATLSDDDKRRSYDETGEVESEDVELKQSEQEWYEYWRELFPTVTVDKIKKFQGEYQGSEEEKGDVLKAYKEGQGKMSWVIDNVMLATDQDEERFREMIEGAIAAKEVKRLKGFKADVLKDAKRKKRAEKEAKEAEELLRAIHAKRGVNALATMATDRRNQMSSFYDSLEEKYGKKGGNGGGDGENGRARIGKKRKA--KKEEEEGG 271
            M++PQAQ+ +AFG KKTLYEIL V  DA  AVIRKAYFKMALTCHPDKCP+DP A ARFQALSI+HATLSD DKRR+YDETGE+ SED EL QSEQEWY+YWR LFPTVTV+KI +F+ EY+ SEEE  DVLKAY+E QGKMS VID+VMLATD+DE RFR+MIE AI  K VKRLK FKA+V KD KRKKRAEKEAKEAEELL AI A+RG +ALATM  DR+ QMSSF  SLEEKYGK    G    + G  R G +  A    ++E GG
Sbjct:    7 MTTPQAQVAKAFGKKKTLYEILDVAKDAASAVIRKAYFKMALTCHPDKCPEDPEATARFQALSIVHATLSDADKRRNYDETGEIGSEDAELNQSEQEWYDYWRALFPTVTVEKIDRFKEEYRESEEEARDVLKAYEEAQGKMSLVIDSVMLATDEDEGRFRKMIEEAIVNKRVKRLKCFKAEVRKDLKRKKRAEKEAKEAEELLEAIQARRGPDALATMGRDRQQQMSSFLQSLEEKYGK----GKKPKDRGHRRCGFRAPAGLPLQKESGG 274
The following BLAST results are available for this feature:
BLAST of NO10G01740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25343.11.200e-8969.85subfamily member 9 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01740NO10G01740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01740.1NO10G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01740.1.cds1NO10G01740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01740.1.cds2NO10G01740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01740.1.cds3NO10G01740.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01740.1 ID=NO10G01740.1|Name=NO10G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=918bp
ATGTCCAGCCCCCAAGCCCAGATCAACCAAGCCTTTGGCACAAAGAAGAC
ACTCTACGAGATCCTCGGCGTGCCTGCGGATGCTACGGTTGCTGTTATTA
GGAAGGCCTACTTTAAGATGGCCTTGACTTGTCATCCGGACAAGTGCCCG
GACGACCCCGGGGCCAATGCTCGCTTTCAAGCCCTCTCAATTATCCACGC
CACCCTCAGCGACGACGACAAGCGTCGGAGCTACGACGAGACGGGAGAAG
TTGAATCGGAAGACGTTGAACTGAAACAAAGCGAGCAGGAATGGTATGAG
TACTGGCGGGAGCTTTTCCCCACGGTGACGGTAGACAAGATCAAAAAGTT
TCAAGGGGAGTATCAAGGGAGCGAGGAAGAAAAGGGAGACGTGCTGAAGG
CCTACAAGGAGGGCCAAGGAAAGATGAGTTGGGTGATTGATAATGTGATG
CTGGCGACGGATCAGGACGAGGAACGCTTTCGGGAGATGATTGAGGGTGC
CATCGCGGCCAAGGAAGTGAAGCGACTCAAGGGCTTCAAGGCGGACGTCC
TGAAGGACGCCAAGCGGAAGAAGCGGGCAGAAAAGGAGGCCAAAGAAGCC
GAAGAGCTGCTGCGTGCCATCCACGCAAAGCGGGGTGTGAACGCCCTTGC
CACAATGGCTACAGACAGGAGGAATCAAATGTCCAGTTTTTACGATTCTC
TGGAGGAAAAGTACGGAAAGAAGGGCGGCAATGGTGGCGGAGATGGAGAG
AATGGTAGGGCGCGGATTGGGAAGAAGAGGAAGGCGAAGAAGGAAGAAGA
GGAGGGGGGGGAAGAGAAGGACATTGACGATGAGGAGTTTGAACGGATTC
GAGCTTCGTTGGGGAGGAATGAGAAAGTGGCCGCAGCGGGGAGAAGGAGT
GATAAGATGAGCGAATGA
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protein sequence of NO10G01740.1

>NO10G01740.1-protein ID=NO10G01740.1-protein|Name=NO10G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MSSPQAQINQAFGTKKTLYEILGVPADATVAVIRKAYFKMALTCHPDKCP
DDPGANARFQALSIIHATLSDDDKRRSYDETGEVESEDVELKQSEQEWYE
YWRELFPTVTVDKIKKFQGEYQGSEEEKGDVLKAYKEGQGKMSWVIDNVM
LATDQDEERFREMIEGAIAAKEVKRLKGFKADVLKDAKRKKRAEKEAKEA
EELLRAIHAKRGVNALATMATDRRNQMSSFYDSLEEKYGKKGGNGGGDGE
NGRARIGKKRKAKKEEEEGGEEKDIDDEEFERIRASLGRNEKVAAAGRRS
DKMSE*
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mRNA from alignment at chr10:484902..486385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01740.1 ID=NO10G01740.1|Name=NO10G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at chr10:484902..486385- (Nannochloropsis oceanica)
ATGTCCAGCCCCCAAGCCCAGATCAACCAAGCCTTTGGCACAAAGAAGAC
ACTCTACGAGATCCTCGGCGTGCCTGCGGATGCTACGGTTGCTGTTATTA
GGAAGGCCTACTTTAAGATGGCCTTGACTTGTGTGAGTATGGGGGAATGA
GCTTGGAGCGAAGGAGGGAGTGGGTGTAAAAATGGTGTAGCGTGCCTTGC
CTCCGTCTCGTAAAATTGCTCTTTGGCGAAAAGGTTGTTCCCACTGATTG
CGTGCAAGTGACAGAGGAGAAGATGGTTGCCGCTCTGGTATCAAATGATC
GCCTCGCTCCACTGCTCCCCGTGCTTTCTGATTTTGCCGAAGCGGGACGA
ACACTATTATTTTCGTTTAAAAACAAACCCATAATATTTTGCCTGCCTTT
TTCTCTTCCGCCGATAGTTCAATGTCATATGTCACACTTATCCCCCCCCT
CCTTTGCCAAACACACAGCATCCGGACAAGTGCCCGGACGACCCCGGGGC
CAATGCTCGCTTTCAAGCCCTCTCAATTATCCACGCCACCCTCAGCGACG
ACGACAAGCGTCGGAGCTACGACGAGACGGGAGAAGTTGAATCGGAAGAC
GTTGAACTGAAACAAAGCGAGCAGGAATGGTATGAGTACTGGCGGGAGCT
TTTCCCCACGGTGACGGTAGACAAGATCAAAAAGTTTCAAGGGGAGTATC
AAGGGAGCGAGGAAGAAAAGGGAGACGTGCTGAAGGCCTACAAGGAGGGC
CAAGGAAAGATGAGTTGGGTGATTGATAATGTGATGCTGGCGACGGATCA
GGACGAGGAACGCTTTCGGGAGATGATTGAGGGTGCCATCGCGGCCAAGG
AAGTGAAGCGACTCAAGGGCTTCAAGGCGGACGTCCTGAAGGACGCCAAG
CGGAAGAAGCGGGCAGAAAAGGTCAGAATAGACGGTGGGAGAGGTGTTGG
GATATAAAGTCGCAAGTATATGCTTTGGTCACCACAAGTCAAGAGAGCTG
CGTCATTAGGGGCGCAATGACGAACCTCTTGTGACCTCTGTTCTTGCTGG
ATCGCCTCTCGCGGCTGAAGGCTGATGCCCCGAAAGTGTTGTCCTCTCAA
CATCTCTCCGTCACCCCCTCTCTCCTTTTCTTTCTTCCCTTTGATCCGCA
GGAGGCCAAAGAAGCCGAAGAGCTGCTGCGTGCCATCCACGCAAAGCGGG
GTGTGAACGCCCTTGCCACAATGGCTACAGACAGGAGGAATCAAATGTCC
AGTTTTTACGATTCTCTGGAGGAAAAGTACGGAAAGAAGGGCGGCAATGG
TGGCGGAGATGGAGAGAATGGTAGGGCGCGGATTGGGAAGAAGAGGAAGG
CGAAGAAGGAAGAAGAGGAGGGGGGGGAAGAGAAGGACATTGACGATGAG
GAGTTTGAACGGATTCGAGCTTCGTTGGGGAGGAATGAGAAAGTGGCCGC
AGCGGGGAGAAGGAGTGATAAGATGAGCGAATGA
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Coding sequence (CDS) from alignment at chr10:484902..486385-

>NO10G01740.1 ID=NO10G01740.1|Name=NO10G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at chr10:484902..486385- (Nannochloropsis oceanica)
ATGTCCAGCCCCCAAGCCCAGATCAACCAAGCCTTTGGCACAAAGAAGAC
ACTCTACGAGATCCTCGGCGTGCCTGCGGATGCTACGGTTGCTGTTATTA
GGAAGGCCTACTTTAAGATGGCCTTGACTTGTCATCCGGACAAGTGCCCG
GACGACCCCGGGGCCAATGCTCGCTTTCAAGCCCTCTCAATTATCCACGC
CACCCTCAGCGACGACGACAAGCGTCGGAGCTACGACGAGACGGGAGAAG
TTGAATCGGAAGACGTTGAACTGAAACAAAGCGAGCAGGAATGGTATGAG
TACTGGCGGGAGCTTTTCCCCACGGTGACGGTAGACAAGATCAAAAAGTT
TCAAGGGGAGTATCAAGGGAGCGAGGAAGAAAAGGGAGACGTGCTGAAGG
CCTACAAGGAGGGCCAAGGAAAGATGAGTTGGGTGATTGATAATGTGATG
CTGGCGACGGATCAGGACGAGGAACGCTTTCGGGAGATGATTGAGGGTGC
CATCGCGGCCAAGGAAGTGAAGCGACTCAAGGGCTTCAAGGCGGACGTCC
TGAAGGACGCCAAGCGGAAGAAGCGGGCAGAAAAGGAGGCCAAAGAAGCC
GAAGAGCTGCTGCGTGCCATCCACGCAAAGCGGGGTGTGAACGCCCTTGC
CACAATGGCTACAGACAGGAGGAATCAAATGTCCAGTTTTTACGATTCTC
TGGAGGAAAAGTACGGAAAGAAGGGCGGCAATGGTGGCGGAGATGGAGAG
AATGGTAGGGCGCGGATTGGGAAGAAGAGGAAGGCGAAGAAGGAAGAAGA
GGAGGGGGGGGAAGAGAAGGACATTGACGATGAGGAGTTTGAACGGATTC
GAGCTTCGTTGGGGAGGAATGAGAAAGTGGCCGCAGCGGGGAGAAGGAGT
GATAAGATGAGCGAATGA
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Synonyms
Publications