NO10G01720.1, NO10G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01720.1
Unique NameNO10G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr10:480588..482188 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:480588..482188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01720.1 vs.
Match: EWM25388.1 (5 - cytosolic iii [Nannochloropsis gaditana])

HSP 1 Score: 456.4 bits (1173), Expect = 7.700e-125
Identity = 229/352 (65.06%), Postives = 279/352 (79.26%), Query Frame = 0 
Query:    7 NGSGISCTVPAQASLNPSSPFSSSADGYVNHRVVINDPVAFQVKKEKLTMDGPSKLQLLFDWDFTMTHFFLDGRRACSCHKAIEDCDLLPASYHDKAQALQTFYYAKEVDPSLTLGQKIPFMEDWVREAHELLIEYNFRRSLLPTAVRNAHLAVREGCQEIMDVSARAAVPLLIFSAGIADVLEEVCRQQLSKPLPDTVHVVSNRMLFSSISSSN---------------------TKERNQGEEKDKEVLVGFTEPVFHVFNKRAASVLDSSSYFHQTDYEQRRNVLLVGDSLGDLHMSDGLDAKEILRIGFLNDRVEERLDEYSQRFDVVLLGDGDLSYVIALLNELVGE 338
            NG+ IS  V A + ++ S       DG     VVI DP +F  KK K+  DGPSKLQLLFDWDFT+THFFL+GRRACSCHKAIEDCDLL A+YH+KAQALQ +YYAKEVDPSL++ +K+P ME WVR AH+LLI + FRRSLLP AV++AHLAVREGCQE++D+SARAAVPLL+FSAGIADVLEEVCRQQL +PLPDTVHVVSNRM+FS +++++                      +E +Q   +D  VLVGFTEPVFHVFNKRA SVL++S+YFHQ DYE+R++ +LVGDSLGDLHMSDGL+ +EI+++G LNDRVEERLDEYSQ+FDVVLLGDGDL+Y+I LL EL+ +
Sbjct:   24 NGNKISNAVSASSRVDMSP---LPVDG---GHVVIRDPASFLAKKAKIASDGPSKLQLLFDWDFTLTHFFLNGRRACSCHKAIEDCDLLSAAYHEKAQALQEYYYAKEVDPSLSVAEKVPLMEAWVRRAHDLLIHHGFRRSLLPLAVKHAHLAVREGCQEVIDLSARAAVPLLVFSAGIADVLEEVCRQQLPRPLPDTVHVVSNRMVFSPVAAASPADAGAARPSVGAPQRGGRGGLEEPSQAGAED-GVLVGFTEPVFHVFNKRAESVLNTSAYFHQIDYEKRKHAILVGDSLGDLHMSDGLELEEIIKVGLLNDRVEERLDEYSQKFDVVLLGDGDLTYIIGLLRELISD 368
The following BLAST results are available for this feature:
BLAST of NO10G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25388.17.700e-12565.065 - cytosolic iii [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01720NO10G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01720.1NO10G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01720.1.cds1NO10G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01720.1.cds2NO10G01720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01720.1.cds3NO10G01720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01720.1.cds4NO10G01720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01720.1.cds5NO10G01720.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01720.1 ID=NO10G01720.1|Name=NO10G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp
ATGAGCAGAGGCAGCCGCAACGGCAGCGGCATTTCCTGCACGGTACCTGC
ACAGGCATCATTGAACCCCTCCAGTCCCTTCTCCTCTTCGGCCGATGGCT
ATGTCAACCACCGCGTGGTTATCAATGACCCCGTTGCGTTTCAGGTTAAG
AAGGAGAAGCTTACAATGGACGGCCCTAGCAAACTTCAGCTACTCTTTGA
CTGGGACTTTACGATGACACACTTTTTCTTGGATGGACGCCGGGCCTGCA
GCTGCCACAAAGCAATTGAGGACTGCGACTTGCTTCCCGCATCCTACCAC
GACAAAGCTCAAGCCCTCCAGACCTTCTACTACGCCAAGGAGGTCGACCC
TTCACTCACACTTGGCCAAAAAATCCCTTTCATGGAAGACTGGGTCCGGG
AGGCCCACGAGCTATTGATCGAGTACAATTTTCGTCGGTCTCTCCTCCCC
ACTGCTGTCCGAAACGCCCACCTCGCCGTGAGGGAGGGATGCCAAGAAAT
CATGGATGTCAGTGCACGGGCCGCGGTGCCTCTATTGATATTTTCGGCAG
GGATCGCTGATGTGTTGGAGGAGGTGTGTCGGCAGCAGTTGTCCAAGCCC
TTGCCGGACACGGTGCATGTCGTGTCGAATCGGATGCTGTTTTCTTCTAT
TTCCTCGTCCAACACAAAAGAAAGAAACCAAGGGGAAGAAAAAGATAAAG
AGGTGTTGGTCGGCTTTACTGAGCCCGTCTTTCACGTATTTAACAAGCGA
GCGGCGAGCGTGCTAGACTCCTCCTCTTACTTTCACCAAACTGATTACGA
ACAACGAAGGAATGTGTTGCTGGTGGGGGACAGCCTGGGAGACCTGCACA
TGAGTGATGGGCTGGACGCGAAGGAGATTTTGAGGATTGGGTTCTTGAAT
GATCGGGTGGAAGAGCGGTTGGACGAATACAGCCAAAGGTTCGACGTAGT
ACTACTTGGTGACGGGGATTTAAGCTATGTGATTGCATTGCTAAACGAAC
TTGTAGGAGAGGGCGAGGGTGGTGCCGGCGGAGGGAATGGTGCATCTTGA
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protein sequence of NO10G01720.1

>NO10G01720.1-protein ID=NO10G01720.1-protein|Name=NO10G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MSRGSRNGSGISCTVPAQASLNPSSPFSSSADGYVNHRVVINDPVAFQVK
KEKLTMDGPSKLQLLFDWDFTMTHFFLDGRRACSCHKAIEDCDLLPASYH
DKAQALQTFYYAKEVDPSLTLGQKIPFMEDWVREAHELLIEYNFRRSLLP
TAVRNAHLAVREGCQEIMDVSARAAVPLLIFSAGIADVLEEVCRQQLSKP
LPDTVHVVSNRMLFSSISSSNTKERNQGEEKDKEVLVGFTEPVFHVFNKR
AASVLDSSSYFHQTDYEQRRNVLLVGDSLGDLHMSDGLDAKEILRIGFLN
DRVEERLDEYSQRFDVVLLGDGDLSYVIALLNELVGEGEGGAGGGNGAS*
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mRNA from alignment at chr10:480588..482188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01720.1 ID=NO10G01720.1|Name=NO10G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at chr10:480588..482188- (Nannochloropsis oceanica)
ATGAGCAGAGGCAGCCGCAACGGCAGCGGCATTTCCTGCACGGTACGTCC
ACCCACATTCCTAGTCCTCCTTCCGACTTGACTTGGACAGGAAAAAATCA
AGCACACACCGTCTCTTCGTAATAATCCCCACACAAAATTGTCAATTGTT
CAATCCACTCCTCATTTTCTCACCCATCTATTCTTAGGTACCTGCACAGG
CATCATTGAACCCCTCCAGTCCCTTCTCCTCTTCGGCCGATGGCTATGTC
AACCACCGCGTGGTTATCAATGACCCCGTTGCGTTTCAGGTTAAGAAGGA
GAAGCTTACAATGGACGGCCCTAGCAAACTTCAGGTAGGCTGCAAGAGCG
AGCGGCAGCCGACGCTGCTGTCCCTTCATCTAATGTGCTTCATTATGCCC
CCCCTCATCTCCTCGTCCGCGTTACATTTAAATGCTACGAATGACATTGT
TGAAATCGTCTCTTCCACATGTTTATACCCTTTCAGCTTCCTTTCCCCAC
CCACTTCCCATCCATACTCCGTCCTTCCCCTTCCTCTCTTCCCCATAGCT
ACTCTTTGACTGGGACTTTACGATGACACACTTTTTCTTGGATGGACGCC
GGGCCTGCAGCTGCCACAAAGCAATTGAGGACTGCGACTTGCTTCCCGCA
TCCTACCACGAGTAAGTTAAGTCAAATTGTCGACAGGAGGCACCCATGCC
AACCTCTCCATTTCTTTCCACACACCCTTCCTGCCCTCCTTCTTCGACAG
CAAAGCTCAAGCCCTCCAGACCTTCTACTACGCCAAGGAGGTCGACCCTT
CACTCACACTTGGCCAAAAAATCCCTTTCATGGAAGACTGGGTCCGGGAG
GCCCACGAGCTATTGATCGAGTACAATTTTCGTCGGTCTCTCCTCCCCAC
TGCTGTCCGAAACGCCCACCTCGCCGTGAGGGAGGGATGCCAAGAAATCA
TGGATGTCAGTGCACGGGCCGCGGTGCCTCTATTGATATTTTCGGCAGGG
ATCGCTGATGTGTTGGAGGAGGTGTGTCGGCAGCAGTTGTCCAAGCCCTT
GCCGGACACGGTGCATGTCGTGTCGAATCGGATGCTGTTTTCTTCTATTT
CCTCGTCCAACACAAAAGAAAGAAACCAAGGGGAAGAAAAAGATAAAGAG
GTGTTGGTCGGCTTTACTGAGCCCGTCTTTCACGTATTTAACAAGCGAGC
GGCGAGCGTGCTAGACTCCTCCTCTTACTTTCACCAAACTGATTACGAAC
AACGAAGGAATGTGTTGCTGGTGGGGGACAGCCTGGGAGACCTGCACATG
AGTGATGGGCTGGACGCGAAGGAGATTTTGAGGATTGGGTTCTTGAATGA
TCGGTAAGTATAAAGATGATGGATGTTGTTTTCATTTCCTTTTCTCCCTC
CTTCCTGTCGTCATTTTTTCTCACCACTACTCTCATATTTACTCAACAAA
ATACAGGGTGGAAGAGCGGTTGGACGAATACAGCCAAAGGTTCGACGTAG
TACTACTTGGTGACGGGGATTTAAGCTATGTGATTGCATTGCTAAACGAA
CTTGTAGGAGAGGGCGAGGGTGGTGCCGGCGGAGGGAATGGTGCATCTTG
A
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Coding sequence (CDS) from alignment at chr10:480588..482188-

>NO10G01720.1 ID=NO10G01720.1|Name=NO10G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at chr10:480588..482188- (Nannochloropsis oceanica)
ATGAGCAGAGGCAGCCGCAACGGCAGCGGCATTTCCTGCACGGTACCTGC
ACAGGCATCATTGAACCCCTCCAGTCCCTTCTCCTCTTCGGCCGATGGCT
ATGTCAACCACCGCGTGGTTATCAATGACCCCGTTGCGTTTCAGGTTAAG
AAGGAGAAGCTTACAATGGACGGCCCTAGCAAACTTCAGCTACTCTTTGA
CTGGGACTTTACGATGACACACTTTTTCTTGGATGGACGCCGGGCCTGCA
GCTGCCACAAAGCAATTGAGGACTGCGACTTGCTTCCCGCATCCTACCAC
GACAAAGCTCAAGCCCTCCAGACCTTCTACTACGCCAAGGAGGTCGACCC
TTCACTCACACTTGGCCAAAAAATCCCTTTCATGGAAGACTGGGTCCGGG
AGGCCCACGAGCTATTGATCGAGTACAATTTTCGTCGGTCTCTCCTCCCC
ACTGCTGTCCGAAACGCCCACCTCGCCGTGAGGGAGGGATGCCAAGAAAT
CATGGATGTCAGTGCACGGGCCGCGGTGCCTCTATTGATATTTTCGGCAG
GGATCGCTGATGTGTTGGAGGAGGTGTGTCGGCAGCAGTTGTCCAAGCCC
TTGCCGGACACGGTGCATGTCGTGTCGAATCGGATGCTGTTTTCTTCTAT
TTCCTCGTCCAACACAAAAGAAAGAAACCAAGGGGAAGAAAAAGATAAAG
AGGTGTTGGTCGGCTTTACTGAGCCCGTCTTTCACGTATTTAACAAGCGA
GCGGCGAGCGTGCTAGACTCCTCCTCTTACTTTCACCAAACTGATTACGA
ACAACGAAGGAATGTGTTGCTGGTGGGGGACAGCCTGGGAGACCTGCACA
TGAGTGATGGGCTGGACGCGAAGGAGATTTTGAGGATTGGGTTCTTGAAT
GATCGGGTGGAAGAGCGGTTGGACGAATACAGCCAAAGGTTCGACGTAGT
ACTACTTGGTGACGGGGATTTAAGCTATGTGATTGCATTGCTAAACGAAC
TTGTAGGAGAGGGCGAGGGTGGTGCCGGCGGAGGGAATGGTGCATCTTGA
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Synonyms
Publications