NO10G01710.1, NO10G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01710.1
Unique NameNO10G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length912
Alignment locationchr10:479228..480139 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:479228..480139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01710.1 vs.
Match: EWM25441.1 (atp-dependent clp protease proteolytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 510.8 bits (1314), Expect = 3.000e-141
Identity = 266/303 (87.79%), Postives = 278/303 (91.75%), Query Frame = 0 
Query:    1 MRSSQILTLAVALCGSFSMTLTSAYQSPSFAPAPSRASRWMLGSRSAGVAPTATFNPPAASARGARGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIFDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRTTEQIVIDLDRDNYLSAQEALDHGLIDEIVELEKAMEREENPNVNLDPVRAFAGVAKDDDPLKYLP 304
            MR S   TL VA+C  F  T+T AY++PSFA  PSRAS+WMLGSRSAG+A   T  P A+S+RG RGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAI+DVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGR TEQIV+DLDRDNYLSAQEAL+HGLIDEIVELEKAME  E+PN  LDPVRAFAGV KDDDPLKYLP
Sbjct:    1 MRPSIFFTLGVAVCCCFLSTVTRAYRAPSFAAEPSRASKWMLGSRSAGIALAPTIKPAASSSRGGRGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNRLYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIAGLAIYDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIHQPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRATEQIVMDLDRDNYLSAQEALEHGLIDEIVELEKAME-PESPNAQLDPVRAFAGVGKDDDPLKYLP 302
The following BLAST results are available for this feature:
BLAST of NO10G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25441.13.000e-14187.79atp-dependent clp protease proteolytic subunit [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01710NO10G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01710.1NO10G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01710.1.cds1NO10G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01710.1 ID=NO10G01710.1|Name=NO10G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=912bp
ATGCGGTCGTCACAGATCCTCACGCTGGCCGTTGCCCTATGCGGAAGCTT
CTCGATGACCTTGACGTCCGCCTACCAGTCGCCCTCCTTCGCCCCTGCTC
CTTCCCGTGCTAGTAGGTGGATGCTTGGCAGTCGTTCCGCGGGTGTTGCC
CCCACAGCCACTTTCAACCCTCCTGCTGCCTCAGCTCGTGGTGCTCGTGG
TGGGGCGGGGTCATTGGTGATGATGCCGATTGGTGTGCCCAAGGTGGCGT
ACCGCGTGCCGGGCTCGGGAAGTGCGGACTGGGTGGACATTTACAACCGT
CTGTACCGGGAACGCATTATTTTCCTGGGGCAAGAGATCGATGACGACTA
TGCCAATCAGATTATCGGTGTACTCTTGTACTTGGATCAGGAGGATAGCT
CCCGGCCGATTTATATGTACATCAATTGCCCCGGTGGCTCTGTGATTGCA
GGGTTGGCTATCTTTGACGTGATGCAGCTTATTCGCTCCGAGATTGTCAC
AATCAACATTGGCATGGCAGCATCCATGGCCTCGTTTTTGCTAGCGGCGG
GAAAGAAGGGGAAGCGTTTGGCTTTGCCGCATTCGCGGGTAATGATTCAT
CAGCCTATGGGCGGGGCACAAGGCCAGGCAGAGGATATTAAGGTTGAAGC
TGCGCAAATTTTGCGGATTAAAAAGAATCTGGTGGGGATGTATAGCAAAA
TGACGGGGAGGACCACGGAGCAGATTGTGATTGATTTGGACAGGGACAAT
TACTTGTCAGCGCAGGAGGCTCTGGACCACGGGTTGATCGATGAGATTGT
GGAGTTGGAAAAGGCCATGGAGAGGGAGGAGAACCCTAATGTTAACTTGG
ACCCCGTCAGGGCCTTTGCAGGGGTGGCGAAGGACGATGACCCATTGAAG
TACTTGCCTTAG
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protein sequence of NO10G01710.1

>NO10G01710.1-protein ID=NO10G01710.1-protein|Name=NO10G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MRSSQILTLAVALCGSFSMTLTSAYQSPSFAPAPSRASRWMLGSRSAGVA
PTATFNPPAASARGARGGAGSLVMMPIGVPKVAYRVPGSGSADWVDIYNR
LYRERIIFLGQEIDDDYANQIIGVLLYLDQEDSSRPIYMYINCPGGSVIA
GLAIFDVMQLIRSEIVTINIGMAASMASFLLAAGKKGKRLALPHSRVMIH
QPMGGAQGQAEDIKVEAAQILRIKKNLVGMYSKMTGRTTEQIVIDLDRDN
YLSAQEALDHGLIDEIVELEKAMEREENPNVNLDPVRAFAGVAKDDDPLK
YLP*
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mRNA from alignment at chr10:479228..480139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01710.1 ID=NO10G01710.1|Name=NO10G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at chr10:479228..480139- (Nannochloropsis oceanica)
ATGCGGTCGTCACAGATCCTCACGCTGGCCGTTGCCCTATGCGGAAGCTT
CTCGATGACCTTGACGTCCGCCTACCAGTCGCCCTCCTTCGCCCCTGCTC
CTTCCCGTGCTAGTAGGTGGATGCTTGGCAGTCGTTCCGCGGGTGTTGCC
CCCACAGCCACTTTCAACCCTCCTGCTGCCTCAGCTCGTGGTGCTCGTGG
TGGGGCGGGGTCATTGGTGATGATGCCGATTGGTGTGCCCAAGGTGGCGT
ACCGCGTGCCGGGCTCGGGAAGTGCGGACTGGGTGGACATTTACAACCGT
CTGTACCGGGAACGCATTATTTTCCTGGGGCAAGAGATCGATGACGACTA
TGCCAATCAGATTATCGGTGTACTCTTGTACTTGGATCAGGAGGATAGCT
CCCGGCCGATTTATATGTACATCAATTGCCCCGGTGGCTCTGTGATTGCA
GGGTTGGCTATCTTTGACGTGATGCAGCTTATTCGCTCCGAGATTGTCAC
AATCAACATTGGCATGGCAGCATCCATGGCCTCGTTTTTGCTAGCGGCGG
GAAAGAAGGGGAAGCGTTTGGCTTTGCCGCATTCGCGGGTAATGATTCAT
CAGCCTATGGGCGGGGCACAAGGCCAGGCAGAGGATATTAAGGTTGAAGC
TGCGCAAATTTTGCGGATTAAAAAGAATCTGGTGGGGATGTATAGCAAAA
TGACGGGGAGGACCACGGAGCAGATTGTGATTGATTTGGACAGGGACAAT
TACTTGTCAGCGCAGGAGGCTCTGGACCACGGGTTGATCGATGAGATTGT
GGAGTTGGAAAAGGCCATGGAGAGGGAGGAGAACCCTAATGTTAACTTGG
ACCCCGTCAGGGCCTTTGCAGGGGTGGCGAAGGACGATGACCCATTGAAG
TACTTGCCTTAG
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Coding sequence (CDS) from alignment at chr10:479228..480139-

>NO10G01710.1 ID=NO10G01710.1|Name=NO10G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr10:479228..480139- (Nannochloropsis oceanica)
ATGCGGTCGTCACAGATCCTCACGCTGGCCGTTGCCCTATGCGGAAGCTT
CTCGATGACCTTGACGTCCGCCTACCAGTCGCCCTCCTTCGCCCCTGCTC
CTTCCCGTGCTAGTAGGTGGATGCTTGGCAGTCGTTCCGCGGGTGTTGCC
CCCACAGCCACTTTCAACCCTCCTGCTGCCTCAGCTCGTGGTGCTCGTGG
TGGGGCGGGGTCATTGGTGATGATGCCGATTGGTGTGCCCAAGGTGGCGT
ACCGCGTGCCGGGCTCGGGAAGTGCGGACTGGGTGGACATTTACAACCGT
CTGTACCGGGAACGCATTATTTTCCTGGGGCAAGAGATCGATGACGACTA
TGCCAATCAGATTATCGGTGTACTCTTGTACTTGGATCAGGAGGATAGCT
CCCGGCCGATTTATATGTACATCAATTGCCCCGGTGGCTCTGTGATTGCA
GGGTTGGCTATCTTTGACGTGATGCAGCTTATTCGCTCCGAGATTGTCAC
AATCAACATTGGCATGGCAGCATCCATGGCCTCGTTTTTGCTAGCGGCGG
GAAAGAAGGGGAAGCGTTTGGCTTTGCCGCATTCGCGGGTAATGATTCAT
CAGCCTATGGGCGGGGCACAAGGCCAGGCAGAGGATATTAAGGTTGAAGC
TGCGCAAATTTTGCGGATTAAAAAGAATCTGGTGGGGATGTATAGCAAAA
TGACGGGGAGGACCACGGAGCAGATTGTGATTGATTTGGACAGGGACAAT
TACTTGTCAGCGCAGGAGGCTCTGGACCACGGGTTGATCGATGAGATTGT
GGAGTTGGAAAAGGCCATGGAGAGGGAGGAGAACCCTAATGTTAACTTGG
ACCCCGTCAGGGCCTTTGCAGGGGTGGCGAAGGACGATGACCCATTGAAG
TACTTGCCTTAG
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Synonyms
Publications