NO10G01680.1, NO10G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01680.1
Unique NameNO10G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length468
Alignment locationchr10:472837..473304 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:472837..473304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G01680.1 vs.
Match: EWM25379.1 (Protein of unknown function DUF1674 [Nannochloropsis gaditana])

HSP 1 Score: 112.8 bits (281), Expect = 9.300e-22
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 0
Query:   63 DNVAAVKVTRATAVDKEEEDGKVVVADKHMITTIKKPACGPDPVEEHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGRCSDFS 156
            D   A     + A  KE+E G ++       + +KK  CG   VEE EDEMEEMFVMGPSG +EWGGPTRGG+HKEPTR+GDWERKGRC+DFS
Sbjct:   76 DEAQATSPGPSNARVKEDEGGVIIEVGTTSQSAVKKDTCGE--VEEAEDEMEEMFVMGPSGRVEWGGPTRGGRHKEPTRFGDWERKGRCTDFS 166          
The following BLAST results are available for this feature:
BLAST of NO10G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25379.19.300e-2259.14Protein of unknown function DUF1674 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01680NO10G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01680.1NO10G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01680.1.cds1NO10G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01680.1 ID=NO10G01680.1|Name=NO10G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp
ATGACTGTGCCCGGAAACCTTGTCCGTAGATTCCTGGCTATCTCAGGAGC
AGCATCATTGTCTGTCGCCCCGGCATGCGACACGTTATTGCTGCGGCATT
CTGTGCGCCACGCAAAGCGCAACGCACACCCGCAGCCAATCGTATCAGTG
TCACGGGGAAGACGTTTGACCACCGCTCCTTTTCCAGATAATGTCGCTGC
TGTCAAGGTTACCCGCGCCACCGCTGTCGACAAAGAGGAGGAAGACGGCA
AAGTAGTGGTGGCAGATAAGCACATGATAACAACCATCAAGAAGCCGGCG
TGCGGCCCGGACCCTGTGGAAGAGCACGAAGACGAGATGGAGGAGATGTT
TGTGATGGGCCCATCGGGTACAATGGAGTGGGGGGGGCCCACACGGGGAG
GGCAGCACAAGGAGCCGACTCGATATGGAGACTGGGAGCGCAAGGGCCGG
TGCTCTGACTTCAGCTAG
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protein sequence of NO10G01680.1

>NO10G01680.1-protein ID=NO10G01680.1-protein|Name=NO10G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MTVPGNLVRRFLAISGAASLSVAPACDTLLLRHSVRHAKRNAHPQPIVSV
SRGRRLTTAPFPDNVAAVKVTRATAVDKEEEDGKVVVADKHMITTIKKPA
CGPDPVEEHEDEMEEMFVMGPSGTMEWGGPTRGGQHKEPTRYGDWERKGR
CSDFS*
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mRNA from alignment at chr10:472837..473304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01680.1 ID=NO10G01680.1|Name=NO10G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp|location=Sequence derived from alignment at chr10:472837..473304+ (Nannochloropsis oceanica)
ATGACTGTGCCCGGAAACCTTGTCCGTAGATTCCTGGCTATCTCAGGAGC AGCATCATTGTCTGTCGCCCCGGCATGCGACACGTTATTGCTGCGGCATT CTGTGCGCCACGCAAAGCGCAACGCACACCCGCAGCCAATCGTATCAGTG TCACGGGGAAGACGTTTGACCACCGCTCCTTTTCCAGATAATGTCGCTGC TGTCAAGGTTACCCGCGCCACCGCTGTCGACAAAGAGGAGGAAGACGGCA AAGTAGTGGTGGCAGATAAGCACATGATAACAACCATCAAGAAGCCGGCG TGCGGCCCGGACCCTGTGGAAGAGCACGAAGACGAGATGGAGGAGATGTT TGTGATGGGCCCATCGGGTACAATGGAGTGGGGGGGGCCCACACGGGGAG GGCAGCACAAGGAGCCGACTCGATATGGAGACTGGGAGCGCAAGGGCCGG TGCTCTGACTTCAGCTAG
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Coding sequence (CDS) from alignment at chr10:472837..473304+

>NO10G01680.1 ID=NO10G01680.1|Name=NO10G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at chr10:472837..473304+ (Nannochloropsis oceanica)
ATGACTGTGCCCGGAAACCTTGTCCGTAGATTCCTGGCTATCTCAGGAGC
AGCATCATTGTCTGTCGCCCCGGCATGCGACACGTTATTGCTGCGGCATT
CTGTGCGCCACGCAAAGCGCAACGCACACCCGCAGCCAATCGTATCAGTG
TCACGGGGAAGACGTTTGACCACCGCTCCTTTTCCAGATAATGTCGCTGC
TGTCAAGGTTACCCGCGCCACCGCTGTCGACAAAGAGGAGGAAGACGGCA
AAGTAGTGGTGGCAGATAAGCACATGATAACAACCATCAAGAAGCCGGCG
TGCGGCCCGGACCCTGTGGAAGAGCACGAAGACGAGATGGAGGAGATGTT
TGTGATGGGCCCATCGGGTACAATGGAGTGGGGGGGGCCCACACGGGGAG
GGCAGCACAAGGAGCCGACTCGATATGGAGACTGGGAGCGCAAGGGCCGG
TGCTCTGACTTCAGCTAG
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Synonyms
Publications