NO10G01600.1, NO10G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01600.1
Unique NameNO10G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr10:456965..458545 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:456965..458545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01600.1 vs.
Match: EWM25450.1 (trna guanosine-2 -o-methyltransferase trm11-like protein [Nannochloropsis gaditana])

HSP 1 Score: 342.4 bits (877), Expect = 2.400e-90
Identity = 184/285 (64.56%), Postives = 215/285 (75.44%), Query Frame = 0 
Query:   52 PSPAFACVIDPSVPPRQVSTSKFLVLFKGGAAGNGDQGTSLACLRIAEFRGLAYRELGDLAAVAALRFEDALETDVSLAGGRKPDEDNEEDEKSSPASSLMYVHGLPSV-LILRRIVERAILVHAAYEVWATGSSLCECAAITKNILNDDPRMGPLRENSTWAASSYVFGTKHGRRKEVDTLPQKLSIFKILLRRLPGAVDLKAPAVRFVLLEDGDAADGDKLHQVWFTREVAKGSRGLTERLSLRRRPYVTTTSMEPKASLVMCNVASLQSGGKVLDPMAGGGG 336
            PSP  AC      PPR    SKFL+LFKGGAA +GDQGTSLACLR AEFRGLAYREL DL AVAALRFEDAL+TD+SL+GGR+  + NE   +   +SSL+YVHGLP    +++ IV+ A+LVHAAY VWA   +  ECA +   +L +D R+  LR N++WAA SYVF  K GRRK+V  LPQKL   +  LR++PG VDLKAP VR VLLEDGDA  G + HQVW TRE+A+GSRGLTERLSLRRRPYVTTTSMEPKASLVM +VA L+ G KV DPMAGGGG
Sbjct:   67 PSPGVAC----RAPPR----SKFLLLFKGGAADSGDQGTSLACLREAEFRGLAYRELQDLDAVAALRFEDALKTDLSLSGGRRKADKNEGRGRGCSSSSLVYVHGLPDDGKVMQAIVQSAVLVHAAYAVWACAPAFSECADVATRMLLEDARLSSLRANASWAAESYVFSAKSGRRKDVALLPQKLYEMRHFLRQVPGPVDLKAPDVRLVLLEDGDAEAGARPHQVWLTREIARGSRGLTERLSLRRRPYVTTTSMEPKASLVMSHVAGLREGDKVCDPMAGGGG 343
The following BLAST results are available for this feature:
BLAST of NO10G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25450.12.400e-9064.56trna guanosine-2 -o-methyltransferase trm11-like p... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01600NO10G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01600.1NO10G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01600.1.cds1NO10G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01600.1 ID=NO10G01600.1|Name=NO10G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
ATGACAAGGCATTGGCTGCCCCACCTACCCAGACTTCTATTTCTGGTCAC
CTGGGTCTCTTGCGCGTGTGCGTTTACGCCGTGGCAGCCACTAGCCCCGC
CAGCACCAGCATTATGGTCATCATTCCCCCACGCCACCTGTGGCGTGTCC
ACTCCTTCGCCCGCCTTCGCGTGTGTAATCGATCCATCAGTACCACCACG
ACAAGTCTCCACGTCAAAGTTCCTCGTACTTTTCAAAGGCGGTGCGGCTG
GCAATGGTGACCAGGGCACCAGCCTGGCCTGCCTACGGATAGCCGAGTTC
CGAGGACTTGCATATCGAGAGCTGGGGGATTTAGCAGCTGTTGCCGCACT
CCGCTTTGAAGACGCTTTGGAGACCGATGTATCCCTGGCAGGTGGGCGAA
AGCCAGACGAGGACAATGAGGAGGACGAGAAGAGCAGCCCGGCTTCATCC
CTTATGTATGTCCACGGACTGCCCTCCGTCCTCATTTTGCGGAGAATTGT
GGAACGTGCTATACTTGTGCACGCCGCGTATGAGGTCTGGGCTACAGGGT
CTTCCTTGTGCGAGTGTGCCGCCATCACCAAGAACATTCTGAACGACGAC
CCACGAATGGGGCCGCTACGAGAAAATTCGACGTGGGCGGCCAGCAGTTA
CGTCTTTGGAACTAAGCACGGTCGACGGAAGGAAGTCGACACACTACCCC
AAAAGCTGTCAATTTTTAAGATACTGCTTCGACGGTTGCCAGGTGCTGTG
GACTTGAAAGCCCCTGCTGTCCGGTTTGTGCTTTTGGAGGACGGAGATGC
CGCGGATGGGGATAAATTGCACCAAGTGTGGTTCACGCGAGAGGTGGCCA
AAGGGTCTCGAGGCTTGACCGAACGCTTGTCCTTGCGGCGACGGCCGTAT
GTTACTACTACCTCCATGGAGCCGAAAGCCAGCTTGGTCATGTGCAATGT
GGCTAGCTTGCAGTCGGGTGGGAAGGTTCTAGATCCTATGGCGGGAGGCG
GGGGTTTGTTGCTTGCTGCCGCTCAGCTCGGCGCTGGTTTGACGGTGGGT
GTAGACGTGAATTCGAGCATTGATGTCAGCCGCATCGATAGCAATTTTCA
CGACCTGGGTTTAAATCCTCCCGCGAATTTTATCTCTGGCGACGTGGGAG
ACCCGAATGTGCAAGAGCGGCTTCACCGATGGGGGCCATTCGACGTGATG
GTGGCCGATCCTCCCTACGGAAAGAGGGAGAGAGGGTCTGTCCGTGCGGA
AGGCGCGATCCAAGAAGCAGTCTATACACTGTACAACTTGGCCGCGAATA
ACAAACTGCTCCGGGTTGGTGGCCGATTGGATTATTTTTTGCCGATGGAC
CCTTGTTGGGCGTCGCGTGATGTGGTGCCGTTGCTTCCATCGCATCCGTG
CTTAACACTCATGGACGTCTCACGGCAGCCATTAAACACCCGGCTGGATC
GATATTTGATTACCTTACACAAGCACCGAGCCGCGCGCGAAGGAGAAAAA
GTGATCATGCCGGATGTTAAGGCGGGGACACAGTCAGAAGAAGACGAGGG
TTCCTCCTCTCGTGTGTGGCATTACAACTAG
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protein sequence of NO10G01600.1

>NO10G01600.1-protein ID=NO10G01600.1-protein|Name=NO10G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MTRHWLPHLPRLLFLVTWVSCACAFTPWQPLAPPAPALWSSFPHATCGVS
TPSPAFACVIDPSVPPRQVSTSKFLVLFKGGAAGNGDQGTSLACLRIAEF
RGLAYRELGDLAAVAALRFEDALETDVSLAGGRKPDEDNEEDEKSSPASS
LMYVHGLPSVLILRRIVERAILVHAAYEVWATGSSLCECAAITKNILNDD
PRMGPLRENSTWAASSYVFGTKHGRRKEVDTLPQKLSIFKILLRRLPGAV
DLKAPAVRFVLLEDGDAADGDKLHQVWFTREVAKGSRGLTERLSLRRRPY
VTTTSMEPKASLVMCNVASLQSGGKVLDPMAGGGGLLLAAAQLGAGLTVG
VDVNSSIDVSRIDSNFHDLGLNPPANFISGDVGDPNVQERLHRWGPFDVM
VADPPYGKRERGSVRAEGAIQEAVYTLYNLAANNKLLRVGGRLDYFLPMD
PCWASRDVVPLLPSHPCLTLMDVSRQPLNTRLDRYLITLHKHRAAREGEK
VIMPDVKAGTQSEEDEGSSSRVWHYN*
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mRNA from alignment at chr10:456965..458545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01600.1 ID=NO10G01600.1|Name=NO10G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp|location=Sequence derived from alignment at chr10:456965..458545+ (Nannochloropsis oceanica)
ATGACAAGGCATTGGCTGCCCCACCTACCCAGACTTCTATTTCTGGTCAC
CTGGGTCTCTTGCGCGTGTGCGTTTACGCCGTGGCAGCCACTAGCCCCGC
CAGCACCAGCATTATGGTCATCATTCCCCCACGCCACCTGTGGCGTGTCC
ACTCCTTCGCCCGCCTTCGCGTGTGTAATCGATCCATCAGTACCACCACG
ACAAGTCTCCACGTCAAAGTTCCTCGTACTTTTCAAAGGCGGTGCGGCTG
GCAATGGTGACCAGGGCACCAGCCTGGCCTGCCTACGGATAGCCGAGTTC
CGAGGACTTGCATATCGAGAGCTGGGGGATTTAGCAGCTGTTGCCGCACT
CCGCTTTGAAGACGCTTTGGAGACCGATGTATCCCTGGCAGGTGGGCGAA
AGCCAGACGAGGACAATGAGGAGGACGAGAAGAGCAGCCCGGCTTCATCC
CTTATGTATGTCCACGGACTGCCCTCCGTCCTCATTTTGCGGAGAATTGT
GGAACGTGCTATACTTGTGCACGCCGCGTATGAGGTCTGGGCTACAGGGT
CTTCCTTGTGCGAGTGTGCCGCCATCACCAAGAACATTCTGAACGACGAC
CCACGAATGGGGCCGCTACGAGAAAATTCGACGTGGGCGGCCAGCAGTTA
CGTCTTTGGAACTAAGCACGGTCGACGGAAGGAAGTCGACACACTACCCC
AAAAGCTGTCAATTTTTAAGATACTGCTTCGACGGTTGCCAGGTGCTGTG
GACTTGAAAGCCCCTGCTGTCCGGTTTGTGCTTTTGGAGGACGGAGATGC
CGCGGATGGGGATAAATTGCACCAAGTGTGGTTCACGCGAGAGGTGGCCA
AAGGGTCTCGAGGCTTGACCGAACGCTTGTCCTTGCGGCGACGGCCGTAT
GTTACTACTACCTCCATGGAGCCGAAAGCCAGCTTGGTCATGTGCAATGT
GGCTAGCTTGCAGTCGGGTGGGAAGGTTCTAGATCCTATGGCGGGAGGCG
GGGGTTTGTTGCTTGCTGCCGCTCAGCTCGGCGCTGGTTTGACGGTGGGT
GTAGACGTGAATTCGAGCATTGATGTCAGCCGCATCGATAGCAATTTTCA
CGACCTGGGTTTAAATCCTCCCGCGAATTTTATCTCTGGCGACGTGGGAG
ACCCGAATGTGCAAGAGCGGCTTCACCGATGGGGGCCATTCGACGTGATG
GTGGCCGATCCTCCCTACGGAAAGAGGGAGAGAGGGTCTGTCCGTGCGGA
AGGCGCGATCCAAGAAGCAGTCTATACACTGTACAACTTGGCCGCGAATA
ACAAACTGCTCCGGGTTGGTGGCCGATTGGATTATTTTTTGCCGATGGAC
CCTTGTTGGGCGTCGCGTGATGTGGTGCCGTTGCTTCCATCGCATCCGTG
CTTAACACTCATGGACGTCTCACGGCAGCCATTAAACACCCGGCTGGATC
GATATTTGATTACCTTACACAAGCACCGAGCCGCGCGCGAAGGAGAAAAA
GTGATCATGCCGGATGTTAAGGCGGGGACACAGTCAGAAGAAGACGAGGG
TTCCTCCTCTCGTGTGTGGCATTACAACTAG
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Coding sequence (CDS) from alignment at chr10:456965..458545+

>NO10G01600.1 ID=NO10G01600.1|Name=NO10G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr10:456965..458545+ (Nannochloropsis oceanica)
ATGACAAGGCATTGGCTGCCCCACCTACCCAGACTTCTATTTCTGGTCAC
CTGGGTCTCTTGCGCGTGTGCGTTTACGCCGTGGCAGCCACTAGCCCCGC
CAGCACCAGCATTATGGTCATCATTCCCCCACGCCACCTGTGGCGTGTCC
ACTCCTTCGCCCGCCTTCGCGTGTGTAATCGATCCATCAGTACCACCACG
ACAAGTCTCCACGTCAAAGTTCCTCGTACTTTTCAAAGGCGGTGCGGCTG
GCAATGGTGACCAGGGCACCAGCCTGGCCTGCCTACGGATAGCCGAGTTC
CGAGGACTTGCATATCGAGAGCTGGGGGATTTAGCAGCTGTTGCCGCACT
CCGCTTTGAAGACGCTTTGGAGACCGATGTATCCCTGGCAGGTGGGCGAA
AGCCAGACGAGGACAATGAGGAGGACGAGAAGAGCAGCCCGGCTTCATCC
CTTATGTATGTCCACGGACTGCCCTCCGTCCTCATTTTGCGGAGAATTGT
GGAACGTGCTATACTTGTGCACGCCGCGTATGAGGTCTGGGCTACAGGGT
CTTCCTTGTGCGAGTGTGCCGCCATCACCAAGAACATTCTGAACGACGAC
CCACGAATGGGGCCGCTACGAGAAAATTCGACGTGGGCGGCCAGCAGTTA
CGTCTTTGGAACTAAGCACGGTCGACGGAAGGAAGTCGACACACTACCCC
AAAAGCTGTCAATTTTTAAGATACTGCTTCGACGGTTGCCAGGTGCTGTG
GACTTGAAAGCCCCTGCTGTCCGGTTTGTGCTTTTGGAGGACGGAGATGC
CGCGGATGGGGATAAATTGCACCAAGTGTGGTTCACGCGAGAGGTGGCCA
AAGGGTCTCGAGGCTTGACCGAACGCTTGTCCTTGCGGCGACGGCCGTAT
GTTACTACTACCTCCATGGAGCCGAAAGCCAGCTTGGTCATGTGCAATGT
GGCTAGCTTGCAGTCGGGTGGGAAGGTTCTAGATCCTATGGCGGGAGGCG
GGGGTTTGTTGCTTGCTGCCGCTCAGCTCGGCGCTGGTTTGACGGTGGGT
GTAGACGTGAATTCGAGCATTGATGTCAGCCGCATCGATAGCAATTTTCA
CGACCTGGGTTTAAATCCTCCCGCGAATTTTATCTCTGGCGACGTGGGAG
ACCCGAATGTGCAAGAGCGGCTTCACCGATGGGGGCCATTCGACGTGATG
GTGGCCGATCCTCCCTACGGAAAGAGGGAGAGAGGGTCTGTCCGTGCGGA
AGGCGCGATCCAAGAAGCAGTCTATACACTGTACAACTTGGCCGCGAATA
ACAAACTGCTCCGGGTTGGTGGCCGATTGGATTATTTTTTGCCGATGGAC
CCTTGTTGGGCGTCGCGTGATGTGGTGCCGTTGCTTCCATCGCATCCGTG
CTTAACACTCATGGACGTCTCACGGCAGCCATTAAACACCCGGCTGGATC
GATATTTGATTACCTTACACAAGCACCGAGCCGCGCGCGAAGGAGAAAAA
GTGATCATGCCGGATGTTAAGGCGGGGACACAGTCAGAAGAAGACGAGGG
TTCCTCCTCTCGTGTGTGGCATTACAACTAG
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Synonyms
Publications