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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:449839..452200 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01570.1 vs.
Match: EWM25449.1 (gdh 6pgl endoplasmic bifunctional protein [Nannochloropsis gaditana]) HSP 1 Score: 466.1 bits (1198), Expect = 1.600e-127 Identity = 241/338 (71.30%), Postives = 269/338 (79.59%), Query Frame = 0
Query: 249 MGKGVVQAILPFRQANRHWLEALWTGRHVASVEVSMKETEDCEGRTSFYEGYGVIRDVLQNHLTQVLVLLKMDI-PEGSSSSSSVYGSHQHRTAVLEELVFLGDMKSPDGEETHASIHVGQYEGYHAHVASDRRSKPLFVKTSVPTAASVTLASKHPRWEGARFTLKAGKALDTRTSYARVVLCDD-REGGRKEGRRCGCEMLFNIQGGEFGTAIVWNKTACAKLIDPEALQTPPGWVVEEEDKVEGGRGL----HVLRPKDGESNLPNAYENVVEAVLAGDRSMFLGTEELLHQWRVWDKVLTRADAMEPELYPAGYALDEVELTGFFGVRAEGGEE 581
MGKGVVQAILPFR+ANR WLEALWTGRHV +VEVSMKETEDC+GRTSFYEGYGVIRDVLQNHLTQVLVLLKMDI P+ S+SS GSH HRTAVL ELV G+ +G E+ ASIHVGQY+GY HVASDRRS+P V+TSVPTAASVTLAS+HPRW G FTLKAGKALD RTSYARVVLCD EG K G C CE+LFNIQGG+FGTAI WN+TAC +I+P A+ TPPGW+ E EG GL VLRP GE N PNAY+ VV AVL+GDRSMFL TEELLHQWRVWD VL++AD MEPELYP G+ALDEVE++G G +E E+
Sbjct: 1 MGKGVVQAILPFRRANRGWLEALWTGRHVGAVEVSMKETEDCQGRTSFYEGYGVIRDVLQNHLTQVLVLLKMDIPPDKESTSSPSLGSHHHRTAVLRELVLGGE---TEGGESRASIHVGQYQGYLDHVASDRRSEPRVVRTSVPTAASVTLASRHPRWGGVSFTLKAGKALDERTSYARVVLCDGVPEGAAKAG--CACELLFNIQGGKFGTAIAWNRTACTGMIEPAAVVTPPGWLSVEN---EGENGLAADWQVLRPTAGE-NAPNAYDMVVAAVLSGDRSMFLDTEELLHQWRVWDNVLSKADTMEPELYPKGFALDEVEMSGLIGSVSEENED 329
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01570.1 ID=NO10G01570.1|Name=NO10G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2194bp
CGCCGAAGCGCCGAAGCAAATGAAAACGGGCGCCCGATGTGTTGGTAAGC
CTCGTCACGACGTGCGGGCGTGATCACGAAGAAGTGCTGTGGTTGTTGAG
TTGCCAACTCGTGTCATAAATAGGGATGTGATTATATCCATACAAGGGTA
TGAGATAAAATTACGAATGAAAAAAAGAACAGTGCTCTGACTCTGCCAAT
CGCTCATGCGCTTGCTTGTGCAGTGGGTACAAGATAAAGCCCATTCCACC
TTGCTTCCCTATCCCTTCACCCACTACTCGCATACCCGACATACTGCGCA
ACACAATTACAGACCACGCAATGAAGAAGAAAGTCGACAGCAGCCGCAGG
CGGGCCTTGCCACTCTTCTTGCTAGCGCTGCTCATCTTGCTTCTCCCCTC
CCTCGCCTCCCCCATCCTCTACGCCAAGCAGCGCACCGAGCCCTCCTCCT
CCTCATCGCGTCGACGGGTGGACATTGTACTGGTCGGCGCCACGTCGAGC
CTAGCCAAGAAGTACCTCTTCCAGAGTTTTTTCCGTTCGTACCTAGAAGA
GGAGCTCAAACCCTTGGGCGCCACGCTAGACTACCACTTCTATGGAGCCG
CTACACGCCCGTTTGAGGAAGGAGGCAAGCTCCTCACTGACTTTCTCGCC
TCCTCAACCTCGTGCAAAGGTGTCCAAAACATCGATTCAACCATTTGCGA
AGCCATGCTCAAGTCCTTCCGGAAAAACTTCCGGTACGTGCAACTGCGAG
GGGAGGACCACTACAAGCAGCTCGGGCGACGGCTGCAGCAAGAGCAAGAG
AATGGAGGGCAGCAATTGGAAGGCCGGCTGTTTTACCTGAGTATCTCTCC
GGACCTATACGGGGATATTGCAAAGTCAATTGCTGAGTACGTGCGACCGA
ATGCAACGGCTGCAGTAGGGAGTGAGAGCAGCAGCAGCCAGGCGGCATGG
GTGCGGGTCGTGTTTGAGAAGCCCTTCGGACGTGACCTGCCCTCCGCCGA
GGCGCTCGCACACGATTTGGCGCAACATCTTGAAGAAGAAGAAATTTACC
GGGTGGACCACTACATGGGCAAGGGCGTGGTGCAAGCCATTTTGCCCTTC
CGCCAAGCGAACAGACACTGGCTGGAGGCCCTGTGGACCGGGAGGCATGT
TGCATCTGTGGAGGTATCCATGAAAGAGACTGAAGACTGCGAAGGTCGCA
CATCCTTCTACGAAGGATACGGGGTCATCCGCGATGTTCTTCAGAACCAC
CTTACCCAAGTCTTGGTCCTCTTGAAAATGGACATACCTGAGGGCTCCTC
CTCGTCTTCCTCTGTCTATGGCTCCCACCAACACCGGACGGCCGTGCTTG
AAGAGCTAGTCTTCCTCGGAGACATGAAGTCACCGGATGGAGAGGAAACG
CATGCCAGCATCCACGTTGGTCAATACGAAGGGTACCATGCCCATGTTGC
GTCCGACCGCCGATCCAAGCCGCTGTTTGTCAAGACGTCTGTTCCCACTG
CTGCTTCGGTGACACTTGCCTCGAAGCATCCTCGTTGGGAAGGGGCTCGA
TTCACACTTAAAGCGGGTAAAGCCTTGGATACCCGGACAAGCTATGCGAG
GGTGGTGTTGTGTGATGATAGGGAGGGAGGGAGAAAGGAAGGGAGGAGGT
GTGGCTGTGAGATGTTGTTCAATATTCAGGGAGGGGAGTTTGGCACGGCG
ATTGTTTGGAATAAGACGGCGTGTGCGAAATTGATCGATCCAGAAGCATT
GCAGACGCCACCGGGATGGGTGGTAGAGGAAGAGGATAAGGTGGAGGGAG
GGAGGGGTTTGCACGTGTTGAGGCCGAAGGACGGGGAGAGTAATCTTCCG
AATGCATATGAAAATGTTGTGGAAGCAGTGCTGGCGGGAGACAGGTCGAT
GTTCTTGGGCACCGAGGAGTTGTTGCACCAGTGGCGGGTGTGGGATAAGG
TGTTGACGAGGGCAGATGCGATGGAACCTGAGCTGTATCCCGCGGGTTAT
GCGTTGGATGAGGTGGAGCTGACTGGGTTTTTTGGGGTGAGGGCGGAGGG
AGGGGAGGAGGAAGAAAAGCGGGAAGAGTTGTAAAAAACAGGATGGGAAT
GAAAAATAAAAAGCACCAAGAAAGGGAGAGAAAACTGTACCATAGCAAAA
CAAGAAAGATAAGCAAGCAAATATAACCAATAGCCTCCTCTCCG back to topprotein sequence of NO10G01570.1 >NO10G01570.1-protein ID=NO10G01570.1-protein|Name=NO10G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MKKKVDSSRRRALPLFLLALLILLLPSLASPILYAKQRTEPSSSSSRRRV
DIVLVGATSSLAKKYLFQSFFRSYLEEELKPLGATLDYHFYGAATRPFEE
GGKLLTDFLASSTSCKGVQNIDSTICEAMLKSFRKNFRYVQLRGEDHYKQ
LGRRLQQEQENGGQQLEGRLFYLSISPDLYGDIAKSIAEYVRPNATAAVG
SESSSSQAAWVRVVFEKPFGRDLPSAEALAHDLAQHLEEEEIYRVDHYMG
KGVVQAILPFRQANRHWLEALWTGRHVASVEVSMKETEDCEGRTSFYEGY
GVIRDVLQNHLTQVLVLLKMDIPEGSSSSSSVYGSHQHRTAVLEELVFLG
DMKSPDGEETHASIHVGQYEGYHAHVASDRRSKPLFVKTSVPTAASVTLA
SKHPRWEGARFTLKAGKALDTRTSYARVVLCDDREGGRKEGRRCGCEMLF
NIQGGEFGTAIVWNKTACAKLIDPEALQTPPGWVVEEEDKVEGGRGLHVL
RPKDGESNLPNAYENVVEAVLAGDRSMFLGTEELLHQWRVWDKVLTRADA
MEPELYPAGYALDEVELTGFFGVRAEGGEEEEKREEL* back to topmRNA from alignment at chr10:449839..452200- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01570.1 ID=NO10G01570.1|Name=NO10G01570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2362bp|location=Sequence derived from alignment at chr10:449839..452200- (Nannochloropsis oceanica)
CGCCGAAGCGCCGAAGCAAATGAAAACGGGCGCCCGATGTGTTGGTAAGC
CTCGTCACGACGTGCGGGCGTGATCACGAAGAAGTGCTGTGGTTGTTGAG
TTGCCAACTCGTGTCATAAATAGGGATGTGATTATATCCATACAAGGGTA
TGAGATAAAATTACGAATGAAAAAAAGAACAGTGCTCTGACTCTGCCAAT
CGCTCATGCGCTTGCTTGTGCAGTGGGTACAAGATAAAGCCCATTCCACC
TTGCTTCCCTATCCCTTCACCCACTACTCGCATACCCGACATACTGCGCA
ACACAATTACAGACCACGCAATGAAGAAGAAAGTCGACAGCAGCCGCAGG
CGGGCCTTGCCACTCTTCTTGCTAGCGCTGCTCATCTTGCTTCTCCCCTC
CCTCGCCTCCCCCATCCTCTACGCCAAGCAGCGCACCGAGCCCTCCTCCT
CCTCATCGCGTCGACGGGTGGACATTGTACTGGTCGGCGCCACGTCGAGC
CTAGCCAAGAAGTACCTCTTCCAGAGTTTTTTCCGTTCGTACCTAGAAGA
GGAGCTCAAACCCTTGGGCGCCACGCTAGACTACCACTTCTATGGAGCCG
CTACACGCCCGTTTGAGGAAGGAGGCAAGCTCCTCACTGACTTTCTCGCC
TCCTCAACCTCGTGCAAAGGTGTCCAAAACATCGATTCAACCATTTGCGA
AGCCATGCTCAAGTCCTTCCGGAAAAACTTCCGGTACGTGCAACTGCGAG
GGGAGGACCACTACAAGCAGCTCGGGCGACGGCTGCAGCAAGAGCAAGAG
AATGGAGGGCAGCAATTGGAAGGCCGGCTGTTTTACCTGAGTATCTCTCC
GGACCTATACGGGGATATTGCAAAGTCAATTGCTGAGTACGTGCGACCGA
ATGCAACGGCTGCAGTAGGGAGTGAGAGCAGCAGCAGCCAGGCGGCATGG
GTGCGGGTCGTGTTTGAGAAGCCCTTCGGACGTGTGAGTTTTGTTTTGAA
GAATGGGGAGTGAAAAGGATGGGACGAAGTTATAAGTCCACGGAACAGGA
TGATTCCAACGCGTATGAGTGAATTGAATTTTGTTTGAAAATAAATGCGT
TTGTCTTTTGATGCTCCACCACTCTCACTCTCTCCCGCTGCCCTCCCTCA
GGACCTGCCCTCCGCCGAGGCGCTCGCACACGATTTGGCGCAACATCTTG
AAGAAGAAGAAATTTACCGGGTGGACCACTACATGGGCAAGGGCGTGGTG
CAAGCCATTTTGCCCTTCCGCCAAGCGAACAGACACTGGCTGGAGGCCCT
GTGGACCGGGAGGCATGTTGCATCTGTGGAGGTATCCATGAAAGAGACTG
AAGACTGCGAAGGTCGCACATCCTTCTACGAAGGATACGGGGTCATCCGC
GATGTTCTTCAGAACCACCTTACCCAAGTCTTGGTCCTCTTGAAAATGGA
CATACCTGAGGGCTCCTCCTCGTCTTCCTCTGTCTATGGCTCCCACCAAC
ACCGGACGGCCGTGCTTGAAGAGCTAGTCTTCCTCGGAGACATGAAGTCA
CCGGATGGAGAGGAAACGCATGCCAGCATCCACGTTGGTCAATACGAAGG
GTACCATGCCCATGTTGCGTCCGACCGCCGATCCAAGCCGCTGTTTGTCA
AGACGTCTGTTCCCACTGCTGCTTCGGTGACACTTGCCTCGAAGCATCCT
CGTTGGGAAGGGGCTCGATTCACACTTAAAGCGGGTAAAGCCTTGGATAC
CCGGACAAGCTATGCGAGGGTGGTGTTGTGTGATGATAGGGAGGGAGGGA
GAAAGGAAGGGAGGAGGTGTGGCTGTGAGATGTTGTTCAATATTCAGGGA
GGGGAGTTTGGCACGGCGATTGTTTGGAATAAGACGGCGTGTGCGAAATT
GATCGATCCAGAAGCATTGCAGACGCCACCGGGATGGGTGGTAGAGGAAG
AGGATAAGGTGGAGGGAGGGAGGGGTTTGCACGTGTTGAGGCCGAAGGAC
GGGGAGAGTAATCTTCCGAATGCATATGAAAATGTTGTGGAAGCAGTGCT
GGCGGGAGACAGGTCGATGTTCTTGGGCACCGAGGAGTTGTTGCACCAGT
GGCGGGTGTGGGATAAGGTGTTGACGAGGGCAGATGCGATGGAACCTGAG
CTGTATCCCGCGGGTTATGCGTTGGATGAGGTGGAGCTGACTGGGTTTTT
TGGGGTGAGGGCGGAGGGAGGGGAGGAGGAAGAAAAGCGGGAAGAGTTGT
AAAAAACAGGATGGGAATGAAAAATAAAAAGCACCAAGAAAGGGAGAGAA
AACTGTACCATAGCAAAACAAGAAAGATAAGCAAGCAAATATAACCAATA
GCCTCCTCTCCG back to topCoding sequence (CDS) from alignment at chr10:449839..452200- >NO10G01570.1 ID=NO10G01570.1|Name=NO10G01570.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr10:449839..452200- (Nannochloropsis oceanica)
ATGAAGAAGAAAGTCGACAGCAGCCGCAGGCGGGCCTTGCCACTCTTCTT
GCTAGCGCTGCTCATCTTGCTTCTCCCCTCCCTCGCCTCCCCCATCCTCT
ACGCCAAGCAGCGCACCGAGCCCTCCTCCTCCTCATCGCGTCGACGGGTG
GACATTGTACTGGTCGGCGCCACGTCGAGCCTAGCCAAGAAGTACCTCTT
CCAGAGTTTTTTCCGTTCGTACCTAGAAGAGGAGCTCAAACCCTTGGGCG
CCACGCTAGACTACCACTTCTATGGAGCCGCTACACGCCCGTTTGAGGAA
GGAGGCAAGCTCCTCACTGACTTTCTCGCCTCCTCAACCTCGTGCAAAGG
TGTCCAAAACATCGATTCAACCATTTGCGAAGCCATGCTCAAGTCCTTCC
GGAAAAACTTCCGGTACGTGCAACTGCGAGGGGAGGACCACTACAAGCAG
CTCGGGCGACGGCTGCAGCAAGAGCAAGAGAATGGAGGGCAGCAATTGGA
AGGCCGGCTGTTTTACCTGAGTATCTCTCCGGACCTATACGGGGATATTG
CAAAGTCAATTGCTGAGTACGTGCGACCGAATGCAACGGCTGCAGTAGGG
AGTGAGAGCAGCAGCAGCCAGGCGGCATGGGTGCGGGTCGTGTTTGAGAA
GCCCTTCGGACGTGACCTGCCCTCCGCCGAGGCGCTCGCACACGATTTGG
CGCAACATCTTGAAGAAGAAGAAATTTACCGGGTGGACCACTACATGGGC
AAGGGCGTGGTGCAAGCCATTTTGCCCTTCCGCCAAGCGAACAGACACTG
GCTGGAGGCCCTGTGGACCGGGAGGCATGTTGCATCTGTGGAGGTATCCA
TGAAAGAGACTGAAGACTGCGAAGGTCGCACATCCTTCTACGAAGGATAC
GGGGTCATCCGCGATGTTCTTCAGAACCACCTTACCCAAGTCTTGGTCCT
CTTGAAAATGGACATACCTGAGGGCTCCTCCTCGTCTTCCTCTGTCTATG
GCTCCCACCAACACCGGACGGCCGTGCTTGAAGAGCTAGTCTTCCTCGGA
GACATGAAGTCACCGGATGGAGAGGAAACGCATGCCAGCATCCACGTTGG
TCAATACGAAGGGTACCATGCCCATGTTGCGTCCGACCGCCGATCCAAGC
CGCTGTTTGTCAAGACGTCTGTTCCCACTGCTGCTTCGGTGACACTTGCC
TCGAAGCATCCTCGTTGGGAAGGGGCTCGATTCACACTTAAAGCGGGTAA
AGCCTTGGATACCCGGACAAGCTATGCGAGGGTGGTGTTGTGTGATGATA
GGGAGGGAGGGAGAAAGGAAGGGAGGAGGTGTGGCTGTGAGATGTTGTTC
AATATTCAGGGAGGGGAGTTTGGCACGGCGATTGTTTGGAATAAGACGGC
GTGTGCGAAATTGATCGATCCAGAAGCATTGCAGACGCCACCGGGATGGG
TGGTAGAGGAAGAGGATAAGGTGGAGGGAGGGAGGGGTTTGCACGTGTTG
AGGCCGAAGGACGGGGAGAGTAATCTTCCGAATGCATATGAAAATGTTGT
GGAAGCAGTGCTGGCGGGAGACAGGTCGATGTTCTTGGGCACCGAGGAGT
TGTTGCACCAGTGGCGGGTGTGGGATAAGGTGTTGACGAGGGCAGATGCG
ATGGAACCTGAGCTGTATCCCGCGGGTTATGCGTTGGATGAGGTGGAGCT
GACTGGGTTTTTTGGGGTGAGGGCGGAGGGAGGGGAGGAGGAAGAAAAGC
GGGAAGAGTTGTAA back to top
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