NO10G01510.1, NO10G01510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01510.1
Unique NameNO10G01510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2095
Alignment locationchr10:434967..437207 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:434967..437207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01510.1 vs.
Match: EWM25359.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 404.4 bits (1038), Expect = 3.100e-109
Identity = 233/311 (74.92%), Postives = 244/311 (78.46%), Query Frame = 0 
Query:    1 MKTSLVTLALAAVPASAFMGGFMGKNFAAPTKASPATPTTMFLNFG-----------------KKGGVSVPKPAGKAAPAKVTPKRAAAAVKKAAPVKKAAAAAVKKAAPVKKAATAAVKKAAPVKKAATAAVKKAVPVKKVAAPLSNPDFAGGLIGSDVEAIRFDPWNLAAERDPEGLAWYRSAELKHGRICMLAALGLFVQSAFHLPDDVFSNPKGLDALFQVSAERPQAIAQILIAIGAIEVAGLAANEGKAPGDFGFDPLNLAPKTEDAFNELQLKEIKNGRLAMVSVAGMLIQEALTNQGVLEQIN 295
            MKTSLVTLALA VPA+AFMGGFMGKNFAAP K +  T TTMFLNFG                 KKGGVS+PKPAGK A AK   K A+  V K AP         KKAAP  K A  A KKAAP + AA           K AAPLSNPDFAGGLIGSDVEAIRFDPWNLA+ERDPEGLAWYRSAELKHGRICMLAALGL VQS++HLPD+VFSN KGLDALFQVSAERPQAIAQILIAIGAIEVAGLAA+EGKAPGDFGFDPLNL PKTE+AFNELQLKEIKNGRLAMV VAGMLIQE LTNQGVLEQIN
Sbjct:   13 MKTSLVTLALATVPATAFMGGFMGKNFAAPAKVASTTTTTMFLNFGSKKAAPAPKTAPKTAPAKKGGVSIPKPAGKVA-AKPAAKPASKPVSKVAP---------KKAAPAPKKAAPAPKKAAPTRAAA-----------KPAAPLSNPDFAGGLIGSDVEAIRFDPWNLASERDPEGLAWYRSAELKHGRICMLAALGLLVQSSYHLPDEVFSNSKGLDALFQVSAERPQAIAQILIAIGAIEVAGLAASEGKAPGDFGFDPLNLKPKTEEAFNELQLKEIKNGRLAMVGVAGMLIQETLTNQGVLEQIN 302
The following BLAST results are available for this feature:
BLAST of NO10G01510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25359.13.100e-10974.92light-harvesting protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01510NO10G01510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01510.1NO10G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01510.1.cds1NO10G01510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01510.1.cds2NO10G01510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01510.1 ID=NO10G01510.1|Name=NO10G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2095bp
AGCCCCCTAAGATTTATCTTCTACCTGTTCAAGCAGAGACCTATTTTGCT
TCCTTGTCCAAACCCAGTTCCCGGAAGACAGCCTCTAGTCTTGACACGTC
ATCGGTGGTATGTTTGTGACTCTGTGGGTTGATGCTTTGGATTTGACACG
CCCACAACTCGAGCCCAGCCTCCCCTGCGCCTCGTTTCCTCTCCAGTCTT
TCGATCCAAACGGAGACTCCTCACCCCCACGACCAAGCACGCACACACAT
AAGATAGACATGGGGCGGGCATGAGCGGACGAATAAACTGCAGCTGAATA
CATGGGAGCGGCTGCATTGGTGCATGTGTGATGCCTGTTGATGGGTGTAA
GGTCTACGGGGATGGACCAGGGAAGGGTGCGACCTCAAGAAGCAGCACTG
CAGCACGCCTTTCTTTGGGACGAGACACGGCCATCTGGCCTTGTTCCAGG
GCATGCACAGAAATGATCGGAGTATGAGCACCATGCTCCATGCGTTTGCC
TACCACGCGGATGGTTGGAATAGACCTTTGCCCACACACGGCGTCGTCCT
CATTCTCAGAGATGCATGGTTCTCCTTCGTCCCCTTTCTCACCACACATC
GCAACCAAACCACAGTTTTAATCCTTTCCAGACGACCCCCCCTTTAAGAT
GAAGACATCCCTTGTTACCCTGGCCCTGGCTGCCGTCCCCGCCTCTGCCT
TCATGGGTGGATTCATGGGCAAGAACTTCGCCGCACCCACTAAGGCTTCC
CCTGCTACCCCCACCACTATGTTCTTGAACTTCGGCAAGAAAGGCGGTGT
GTCCGTCCCCAAGCCCGCAGGCAAGGCCGCCCCGGCTAAGGTAACCCCTA
AGAGGGCTGCAGCCGCCGTCAAGAAGGCGGCGCCCGTCAAGAAGGCTGCA
GCCGCCGCTGTTAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGC
TGTTAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGCTGTCAAAA
AGGCGGTGCCTGTCAAGAAGGTGGCCGCACCCTTGTCTAACCCTGACTTT
GCTGGTGGGTTGATCGGCTCCGATGTGGAGGCCATTCGATTCGACCCCTG
GAACCTAGCCGCGGAGCGCGACCCCGAAGGCTTGGCCTGGTACCGCTCGG
CCGAGCTCAAGCACGGGCGTATTTGCATGTTGGCAGCCCTTGGGTTGTTC
GTCCAATCTGCCTTCCACTTGCCGGACGATGTGTTCAGCAACCCCAAGGG
CCTTGATGCTCTCTTCCAGGTGTCGGCGGAGCGGCCTCAGGCGATTGCTC
AGATTTTGATTGCGATCGGCGCGATTGAAGTTGCAGGTTTGGCAGCGAAC
GAGGGAAAGGCCCCGGGGGATTTTGGATTTGACCCCCTCAACCTGGCGCC
CAAGACGGAGGATGCGTTCAACGAGTTGCAGTTGAAGGAGATCAAGAACG
GACGATTGGCGATGGTGTCGGTGGCGGGCATGCTGATCCAAGAGGCGCTC
ACGAACCAGGGTGTGCTTGAGCAGATCAACAGCGGCCACTTGAGCCCCTT
CAATGACGGCCAGGGTGCCTTCTAAGTTTTTCATGTCTCCCTCCACCGCC
AGGGCTGCTCCTGCTGCCCGCATCCTGCGTCTAAAACTATAGACGCTATA
TACGTAAAGTGCAAGCCACAACGACGATGGGAATGACAGATATGAAAAGA
CTTCGAAAGAGAGACTCATAGAACATGAAAGAAGAATTTGGAGGAAGAGC
GAAGAAGGGGTGCATAACGTGAAGGTAGAGGATACATACGACGACGATAG
GGGGGTAGCGTGAGTGTGTGAGGGAAGGAGTTTGCGTTGGGTTGTTGGGC
TTAGGTCTTGGATGAATTACTTTCTTTTCTTTTTCCCTGTCTTCCTCCCG
ACCTTGATTCCTGCCTTCCGCAGGCGCACGAGGTCGAAGAAGAAGACGGC
GATAAAGAAGGGGAAGCAGGAATTGAGTTTGAAAACGAACGACCAGAAGA
AGAAAACCCGACATGTGATAACCGAGCGACTGAACCAGCACGCGACAAGC
TATGGCAAGCGAAAATGCAAGCAAGATCTCCATTCCCCCTCCGCG
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protein sequence of NO10G01510.1

>NO10G01510.1-protein ID=NO10G01510.1-protein|Name=NO10G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MKTSLVTLALAAVPASAFMGGFMGKNFAAPTKASPATPTTMFLNFGKKGG
VSVPKPAGKAAPAKVTPKRAAAAVKKAAPVKKAAAAAVKKAAPVKKAATA
AVKKAAPVKKAATAAVKKAVPVKKVAAPLSNPDFAGGLIGSDVEAIRFDP
WNLAAERDPEGLAWYRSAELKHGRICMLAALGLFVQSAFHLPDDVFSNPK
GLDALFQVSAERPQAIAQILIAIGAIEVAGLAANEGKAPGDFGFDPLNLA
PKTEDAFNELQLKEIKNGRLAMVSVAGMLIQEALTNQGVLEQINSGHLSP
FNDGQGAF*
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mRNA from alignment at chr10:434967..437207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01510.1 ID=NO10G01510.1|Name=NO10G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp|location=Sequence derived from alignment at chr10:434967..437207- (Nannochloropsis oceanica)
AGCCCCCTAAGATTTATCTTCTACCTGTTCAAGCAGAGACCTATTTTGCT
TCCTTGTCCAAACCCAGTTCCCGGAAGACAGCCTCTAGTCTTGACACGTC
ATCGGTGGTATGTTTGTGACTCTGTGGGTTGATGCTTTGGATTTGACACG
CCCACAACTCGAGCCCAGCCTCCCCTGCGCCTCGTTTCCTCTCCAGTCTT
TCGATCCAAACGGAGACTCCTCACCCCCACGACCAAGCACGCACACACAT
AAGATAGACATGGGGCGGGCATGAGCGGACGAATAAACTGCAGCTGAATA
CATGGGAGCGGCTGCATTGGTGCATGTGTGATGCCTGTTGATGGGTGTAA
GGTCTACGGGGATGGACCAGGGAAGGGTGCGACCTCAAGAAGCAGCACTG
CAGCACGCCTTTCTTTGGGACGAGACACGGCCATCTGGCCTTGTTCCAGG
GCATGCACAGAAATGATCGGAGTATGAGCACCATGCTCCATGCGTTTGCC
TACCACGCGGATGGTTGGAATAGACCTTTGCCCACACACGGCGTCGTCCT
CATTCTCAGAGATGCATGGTTCTCCTTCGTCCCCTTTCTCACCACACATC
GCAACCAAACCACAGTTTTAATCCTTTCCAGACGACCCCCCCTTTAAGAT
GAAGACATCCCTTGTTACCCTGGCCCTGGCTGCCGTCCCCGCCTCTGCCT
TCATGGGTGGATTCATGGGCAAGAACTTCGCCGCACCCACTAAGGCTTCC
CCTGCTACCCCCACCACTATGTTCTTGAACTTCGGCAAGAAAGGCGGTGT
GTCCGTCCCCAAGCCCGCAGGCAAGGCCGCCCCGGCTAAGGTAACCCCTA
AGAGGGCTGCAGCCGCCGTCAAGAAGGCGGCGCCCGTCAAGAAGGCTGCA
GCCGCCGCTGTTAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGC
TGTTAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGCTGTCAAAA
AGGCGGTGCCTGTCAAGAAGGTGGCCGCACCCTTGTCTAACCCTGACTTT
GCTGGTGGGTTGATCGGCTCCGATGTGGAGGCCATTCGATTCGACCCCTG
GAACCTAGCCGCGGAGCGCGACCCCGAAGGCTTGGCCTGGTACCGCTCGG
CCGAGCTCAAGCACGGGCGTATTTGCATGTTGGCAGCCCTTGGGTTGTTC
GTCCAATCTGCCTTCCACTTGCCGGACGATGTGTTCAGCAACCCCAAGGG
CCTTGATGCTCTCTTCCAGGTGTCGGCGGAGCGGCCTCAGGCGATTGCTC
AGATTTTGATTGCGATCGGCGCGATTGAAGTTGCAGGTTTGGCAGCGAAC
GAGGGAAAGGCCCCGGGGGATTTTGGATTTGACCCCCTCAACCTGGCGCC
CAAGACGGAGGATGCGTTCAACGAGTTGCAGTTGAAGGAGATCAAGAACG
GACGATTGGCGATGGTGTCGGTGGCGGGCATGCTGATCCAAGAGGCGCTC
ACGAACCAGGGTGTGCTTGAGCAGATCAACAGGTCAGTTCAAGTAGGAAG
ACAGCCCAGGAGTGGAGACAAGGGCGAATGGACAGGAAGGAGAAACAGTG
GGTATGACATTTTTCATGCGCATACATACACCAACACTCGCCAACCCACT
TCCCCTTTCTCCCCTTCCTCTCTAACAGCGGCCACTTGAGCCCCTTCAAT
GACGGCCAGGGTGCCTTCTAAGTTTTTCATGTCTCCCTCCACCGCCAGGG
CTGCTCCTGCTGCCCGCATCCTGCGTCTAAAACTATAGACGCTATATACG
TAAAGTGCAAGCCACAACGACGATGGGAATGACAGATATGAAAAGACTTC
GAAAGAGAGACTCATAGAACATGAAAGAAGAATTTGGAGGAAGAGCGAAG
AAGGGGTGCATAACGTGAAGGTAGAGGATACATACGACGACGATAGGGGG
GTAGCGTGAGTGTGTGAGGGAAGGAGTTTGCGTTGGGTTGTTGGGCTTAG
GTCTTGGATGAATTACTTTCTTTTCTTTTTCCCTGTCTTCCTCCCGACCT
TGATTCCTGCCTTCCGCAGGCGCACGAGGTCGAAGAAGAAGACGGCGATA
AAGAAGGGGAAGCAGGAATTGAGTTTGAAAACGAACGACCAGAAGAAGAA
AACCCGACATGTGATAACCGAGCGACTGAACCAGCACGCGACAAGCTATG
GCAAGCGAAAATGCAAGCAAGATCTCCATTCCCCCTCCGCG
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Coding sequence (CDS) from alignment at chr10:434967..437207-

>NO10G01510.1 ID=NO10G01510.1|Name=NO10G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=927bp|location=Sequence derived from alignment at chr10:434967..437207- (Nannochloropsis oceanica)
ATGAAGACATCCCTTGTTACCCTGGCCCTGGCTGCCGTCCCCGCCTCTGC
CTTCATGGGTGGATTCATGGGCAAGAACTTCGCCGCACCCACTAAGGCTT
CCCCTGCTACCCCCACCACTATGTTCTTGAACTTCGGCAAGAAAGGCGGT
GTGTCCGTCCCCAAGCCCGCAGGCAAGGCCGCCCCGGCTAAGGTAACCCC
TAAGAGGGCTGCAGCCGCCGTCAAGAAGGCGGCGCCCGTCAAGAAGGCTG
CAGCCGCCGCTGTTAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCC
GCTGTTAAAAAGGCGGCGCCCGTCAAGAAGGCTGCAACCGCCGCTGTCAA
AAAGGCGGTGCCTGTCAAGAAGGTGGCCGCACCCTTGTCTAACCCTGACT
TTGCTGGTGGGTTGATCGGCTCCGATGTGGAGGCCATTCGATTCGACCCC
TGGAACCTAGCCGCGGAGCGCGACCCCGAAGGCTTGGCCTGGTACCGCTC
GGCCGAGCTCAAGCACGGGCGTATTTGCATGTTGGCAGCCCTTGGGTTGT
TCGTCCAATCTGCCTTCCACTTGCCGGACGATGTGTTCAGCAACCCCAAG
GGCCTTGATGCTCTCTTCCAGGTGTCGGCGGAGCGGCCTCAGGCGATTGC
TCAGATTTTGATTGCGATCGGCGCGATTGAAGTTGCAGGTTTGGCAGCGA
ACGAGGGAAAGGCCCCGGGGGATTTTGGATTTGACCCCCTCAACCTGGCG
CCCAAGACGGAGGATGCGTTCAACGAGTTGCAGTTGAAGGAGATCAAGAA
CGGACGATTGGCGATGGTGTCGGTGGCGGGCATGCTGATCCAAGAGGCGC
TCACGAACCAGGGTGTGCTTGAGCAGATCAACAGCGGCCACTTGAGCCCC
TTCAATGACGGCCAGGGTGCCTTCTAA
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Synonyms
Publications