NO10G01490.1, NO10G01490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01490.1
Unique NameNO10G01490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1149
Alignment locationchr10:431460..432608 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:431460..432608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01490.1 vs.
Match: EWM25393.1 (gamma-tocopherol methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 524.6 bits (1350), Expect = 2.500e-145
Identity = 272/386 (70.47%), Postives = 309/386 (80.05%), Query Frame = 0 
Query:    3 LTTTVVLVGSMALTQAFSTPSPKPTSPLFGSS------SRGSGNPQQVSSSSPPSSSSCPASFTSNTPLSSSASSSPSPPKRKGFSHFFDKLNPLKYRDFGVGTELKDGIATFYDESTAIWEEVWGEHLHHGYYYTGKEKNHQKAQVDMIEESLKFAGVGDVTTSGVKRAVDVGCGIGGSSRFLATKYGAQVRGITLSPFQCRRAQFLTQKAGLEDKAKFSVADALAMPFQKETFDLVWSMESGEHMPDKKQFMRELVRVAAPGGRIVVVTWCHRNLKDGEKLTRFERGLLKLINSIYFLPPWVSMNRYVALAEEEGLEGIKTADWTQVVKPFWPAVLVSCLNWKSIKVLFTSETVRKGALAILYMMVGYSVGLIKFGVITGQKKK 383
            L  T +++     T AF+ P     SPLFG        S     P   S +SP    S PAS TS    SSS+S+  SP  RKGF    DK+NPLK+R+FGVG ELKDGIA FYDEST IWEEVWG+HLHHGYYYTGKEK+HQKAQ+DMIEESL+F+G+G    S +KR VDVGCGIGGSSR+LA K+GAQVRGITLSPFQCRRAQ LT K+GLED AKF VADALAMPF +++FDLVWSMESGEHMPDK++F++ELVRVAAPGGR+++VTWCHRNLK  E+LTRFERGLLKLINSIYFLPPWVSM+ YVALA+EEGL  IKTADWT+ VKPFWPAVL SCLN KSIKVL TS TVRKGALAILYMM+GYS GLI+FGVITG+K K
Sbjct:    6 LILTCLVLAHGQHTDAFANPR----SPLFGHGQCVCPPSSRENMPSICSYTSP----STPASSTSLPRASSSSSTPASPAPRKGFLGLLDKVNPLKFREFGVGNELKDGIAAFYDESTGIWEEVWGDHLHHGYYYTGKEKDHQKAQLDMIEESLRFSGIGVAEESEIKRVVDVGCGIGGSSRYLARKFGAQVRGITLSPFQCRRAQALTHKSGLEDSAKFEVADALAMPFSEKSFDLVWSMESGEHMPDKRRFVKELVRVAAPGGRVIIVTWCHRNLKPEERLTRFERGLLKLINSIYFLPPWVSMDAYVALAQEEGLTEIKTADWTRQVKPFWPAVLRSCLNLKSIKVLLTSSTVRKGALAILYMMLGYSTGLIRFGVITGRKPK 383
The following BLAST results are available for this feature:
BLAST of NO10G01490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25393.12.500e-14570.47gamma-tocopherol methyltransferase [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01490NO10G01490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01490.1NO10G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01490.1.cds1NO10G01490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01490.1 ID=NO10G01490.1|Name=NO10G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
ATGAAGTTGACCACTACCGTCGTCCTCGTCGGAAGCATGGCCTTGACCCA
GGCATTCTCCACACCTTCCCCCAAGCCGACCAGCCCTTTGTTTGGCAGCA
GCAGCCGTGGCAGTGGCAACCCCCAACAGGTCTCCTCCTCTTCGCCACCC
TCCTCGTCATCATGTCCAGCGTCGTTCACTTCCAACACGCCCCTCTCTTC
CTCCGCCTCGTCCTCCCCAAGCCCCCCCAAAAGGAAAGGCTTCTCCCATT
TCTTCGACAAGCTGAACCCCCTCAAGTACCGTGACTTTGGCGTGGGCACA
GAGCTTAAAGACGGGATCGCGACCTTTTATGACGAGTCCACTGCCATTTG
GGAAGAGGTATGGGGAGAGCATTTGCACCACGGCTATTACTACACAGGCA
AGGAGAAGAATCATCAGAAAGCGCAAGTTGACATGATTGAAGAGTCCCTG
AAGTTTGCAGGGGTGGGCGATGTGACAACCAGCGGGGTGAAGCGGGCGGT
GGATGTGGGGTGCGGAATTGGAGGGTCGTCCCGATTTTTGGCGACAAAGT
ACGGAGCTCAGGTTAGGGGGATCACATTGAGTCCGTTTCAATGTCGACGA
GCGCAGTTTTTGACGCAGAAGGCCGGGTTAGAAGATAAGGCGAAATTTTC
GGTAGCGGATGCTCTGGCGATGCCTTTCCAAAAAGAGACGTTTGATTTGG
TGTGGAGTATGGAGAGTGGGGAGCATATGCCGGATAAGAAGCAGTTCATG
AGAGAATTGGTCCGGGTGGCGGCGCCCGGGGGAAGAATTGTCGTAGTGAC
TTGGTGTCATCGCAATTTAAAAGACGGGGAGAAATTGACGAGATTTGAGA
GGGGGTTGCTCAAATTGATCAATTCGATTTATTTTTTGCCGCCGTGGGTC
AGTATGAATAGGTACGTGGCTCTGGCGGAGGAGGAGGGGTTAGAGGGAAT
TAAGACGGCGGATTGGACTCAGGTCGTGAAGCCGTTTTGGCCGGCAGTGC
TCGTGAGTTGCTTGAATTGGAAAAGTATCAAGGTGCTGTTCACCAGCGAG
ACGGTACGGAAGGGGGCGTTGGCGATATTGTACATGATGGTGGGGTACTC
GGTAGGATTGATTAAGTTTGGGGTGATAACCGGACAGAAGAAAAAGTAA
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protein sequence of NO10G01490.1

>NO10G01490.1-protein ID=NO10G01490.1-protein|Name=NO10G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MKLTTTVVLVGSMALTQAFSTPSPKPTSPLFGSSSRGSGNPQQVSSSSPP
SSSSCPASFTSNTPLSSSASSSPSPPKRKGFSHFFDKLNPLKYRDFGVGT
ELKDGIATFYDESTAIWEEVWGEHLHHGYYYTGKEKNHQKAQVDMIEESL
KFAGVGDVTTSGVKRAVDVGCGIGGSSRFLATKYGAQVRGITLSPFQCRR
AQFLTQKAGLEDKAKFSVADALAMPFQKETFDLVWSMESGEHMPDKKQFM
RELVRVAAPGGRIVVVTWCHRNLKDGEKLTRFERGLLKLINSIYFLPPWV
SMNRYVALAEEEGLEGIKTADWTQVVKPFWPAVLVSCLNWKSIKVLFTSE
TVRKGALAILYMMVGYSVGLIKFGVITGQKKK*
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mRNA from alignment at chr10:431460..432608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01490.1 ID=NO10G01490.1|Name=NO10G01490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp|location=Sequence derived from alignment at chr10:431460..432608- (Nannochloropsis oceanica)
ATGAAGTTGACCACTACCGTCGTCCTCGTCGGAAGCATGGCCTTGACCCA
GGCATTCTCCACACCTTCCCCCAAGCCGACCAGCCCTTTGTTTGGCAGCA
GCAGCCGTGGCAGTGGCAACCCCCAACAGGTCTCCTCCTCTTCGCCACCC
TCCTCGTCATCATGTCCAGCGTCGTTCACTTCCAACACGCCCCTCTCTTC
CTCCGCCTCGTCCTCCCCAAGCCCCCCCAAAAGGAAAGGCTTCTCCCATT
TCTTCGACAAGCTGAACCCCCTCAAGTACCGTGACTTTGGCGTGGGCACA
GAGCTTAAAGACGGGATCGCGACCTTTTATGACGAGTCCACTGCCATTTG
GGAAGAGGTATGGGGAGAGCATTTGCACCACGGCTATTACTACACAGGCA
AGGAGAAGAATCATCAGAAAGCGCAAGTTGACATGATTGAAGAGTCCCTG
AAGTTTGCAGGGGTGGGCGATGTGACAACCAGCGGGGTGAAGCGGGCGGT
GGATGTGGGGTGCGGAATTGGAGGGTCGTCCCGATTTTTGGCGACAAAGT
ACGGAGCTCAGGTTAGGGGGATCACATTGAGTCCGTTTCAATGTCGACGA
GCGCAGTTTTTGACGCAGAAGGCCGGGTTAGAAGATAAGGCGAAATTTTC
GGTAGCGGATGCTCTGGCGATGCCTTTCCAAAAAGAGACGTTTGATTTGG
TGTGGAGTATGGAGAGTGGGGAGCATATGCCGGATAAGAAGCAGTTCATG
AGAGAATTGGTCCGGGTGGCGGCGCCCGGGGGAAGAATTGTCGTAGTGAC
TTGGTGTCATCGCAATTTAAAAGACGGGGAGAAATTGACGAGATTTGAGA
GGGGGTTGCTCAAATTGATCAATTCGATTTATTTTTTGCCGCCGTGGGTC
AGTATGAATAGGTACGTGGCTCTGGCGGAGGAGGAGGGGTTAGAGGGAAT
TAAGACGGCGGATTGGACTCAGGTCGTGAAGCCGTTTTGGCCGGCAGTGC
TCGTGAGTTGCTTGAATTGGAAAAGTATCAAGGTGCTGTTCACCAGCGAG
ACGGTACGGAAGGGGGCGTTGGCGATATTGTACATGATGGTGGGGTACTC
GGTAGGATTGATTAAGTTTGGGGTGATAACCGGACAGAAGAAAAAGTAA
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Coding sequence (CDS) from alignment at chr10:431460..432608-

>NO10G01490.1 ID=NO10G01490.1|Name=NO10G01490.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr10:431460..432608- (Nannochloropsis oceanica)
ATGAAGTTGACCACTACCGTCGTCCTCGTCGGAAGCATGGCCTTGACCCA
GGCATTCTCCACACCTTCCCCCAAGCCGACCAGCCCTTTGTTTGGCAGCA
GCAGCCGTGGCAGTGGCAACCCCCAACAGGTCTCCTCCTCTTCGCCACCC
TCCTCGTCATCATGTCCAGCGTCGTTCACTTCCAACACGCCCCTCTCTTC
CTCCGCCTCGTCCTCCCCAAGCCCCCCCAAAAGGAAAGGCTTCTCCCATT
TCTTCGACAAGCTGAACCCCCTCAAGTACCGTGACTTTGGCGTGGGCACA
GAGCTTAAAGACGGGATCGCGACCTTTTATGACGAGTCCACTGCCATTTG
GGAAGAGGTATGGGGAGAGCATTTGCACCACGGCTATTACTACACAGGCA
AGGAGAAGAATCATCAGAAAGCGCAAGTTGACATGATTGAAGAGTCCCTG
AAGTTTGCAGGGGTGGGCGATGTGACAACCAGCGGGGTGAAGCGGGCGGT
GGATGTGGGGTGCGGAATTGGAGGGTCGTCCCGATTTTTGGCGACAAAGT
ACGGAGCTCAGGTTAGGGGGATCACATTGAGTCCGTTTCAATGTCGACGA
GCGCAGTTTTTGACGCAGAAGGCCGGGTTAGAAGATAAGGCGAAATTTTC
GGTAGCGGATGCTCTGGCGATGCCTTTCCAAAAAGAGACGTTTGATTTGG
TGTGGAGTATGGAGAGTGGGGAGCATATGCCGGATAAGAAGCAGTTCATG
AGAGAATTGGTCCGGGTGGCGGCGCCCGGGGGAAGAATTGTCGTAGTGAC
TTGGTGTCATCGCAATTTAAAAGACGGGGAGAAATTGACGAGATTTGAGA
GGGGGTTGCTCAAATTGATCAATTCGATTTATTTTTTGCCGCCGTGGGTC
AGTATGAATAGGTACGTGGCTCTGGCGGAGGAGGAGGGGTTAGAGGGAAT
TAAGACGGCGGATTGGACTCAGGTCGTGAAGCCGTTTTGGCCGGCAGTGC
TCGTGAGTTGCTTGAATTGGAAAAGTATCAAGGTGCTGTTCACCAGCGAG
ACGGTACGGAAGGGGGCGTTGGCGATATTGTACATGATGGTGGGGTACTC
GGTAGGATTGATTAAGTTTGGGGTGATAACCGGACAGAAGAAAAAGTAA
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Synonyms
Publications