NO10G01420.1, NO10G01420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01420.1
Unique NameNO10G01420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2136
Alignment locationchr10:417717..420070 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:417717..420070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01420.1 vs.
Match: EWM25357.1 (poly (adp-ribose) polymerase member 8 [Nannochloropsis gaditana])

HSP 1 Score: 252.3 bits (643), Expect = 4.300e-63
Identity = 153/324 (47.22%), Postives = 191/324 (58.95%), Query Frame = 0 
Query:  360 DLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFG------VVPGGKGGAPLFAYQIIALCEVINLPQYRCGLTGGGSSGTPAPSTSTFSSDFFSSSSSCPTTRQRRRGSNGTSSSSSSSSSSSSSSSSSSSSSSSKSSSSSEYWVVGDDTHLVVRALLLFKDPAVLRGPQPLPASSSSANTVMTPLQNNNINVLQQQQCP---INPQHRPFHPLPRPPVAQRHIYLQFIVWTVRVMLFGVALIIFLETVENLWVHRGASWGVGKDRK 675
            D PC +FPL HA ++RF AL+ +HGT +GFHGS P +F SIVS GLRSLSGT+GM+NGA FGDGVYVASKCEVARNFG WGVPVW+HS+FG            G  P+FAYQ+IALCE+I++P+YRCG  G                   S  S+   T  R+R    TS+  SS +                +   SEYWVV +D+HLVVRALLLFKDPA+L      P S+ +              V Q++  P    N   +P  PLPR PVA+R +YL F++  +RV+L G A IIFLETVE L   R  S G G+ R+
Sbjct:  436 DRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPG-------------------SDGSAVAVTAARQRSEPSTSTPVSSPT-------------REVNRDRSEYWVVANDSHLVVRALLLFKDPAILPNAPTFPLSTRT--------------VRQRRGSPGAAANLPPQPSPPLPRAPVARRQLYLHFVLGVMRVILMGTAFIIFLETVEKLLARREKSLGGGRGRR 713
The following BLAST results are available for this feature:
BLAST of NO10G01420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25357.14.300e-6347.22poly (adp-ribose) polymerase member 8 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01420NO10G01420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01420.1NO10G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01420.1.cds1NO10G01420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G01420.1.cds2NO10G01420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01420.1 ID=NO10G01420.1|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
ACTACAGTCACACACAGGAAGTAAGCTGCAACAAGCCTCAACTCTCGCTT
CTCCAACAATCACCGGCACAAGCAGCAGTTCTCATCCACCATGGCGGCGT
CAGAAACTGAGGTGGAGTCCTGCTTGATCAGCAAGGAGGTAGCGCACGTC
CTGGCGGTGCTGGCGATGCGCAATAACCCTATGAAGGAGGACTCACTGAA
GCAAATCGGATCCATCCAAGCCTCTTCCTCCTCCAGCTCCTTCTCCTCCT
CCCAATCATACTCCTCCTCTCCCTCCCTCACCATCGAAATTCAACGTCTA
GAATGGCTCCCCCAGAAGCGGACACTTTATCTAGCCGCCTACCCTGAGGT
CAATCTCTACGCCTCTTCCTCCTCCTCCTCTTTCCCTCTCGAGCTCACCC
GAGCCCAACAGCTCCTCCTCTCTCCTCCGGTGGTGCTCGAGATTTATTTT
CCCAATTTATCTTCCGAGCCACCCTTCTGCTTTTCCACTTCAGATGCTGG
CGCGTTGGTCGCAGAGCGGGTGAACAGCAGCGGTAGCCTCTTGCCTCTAG
ATCGATCGTCATTATTGCATGCCGTGTCCAAAATTACTGCGATTATCAAG
CAGGAAGTGGATAGCATTTGGCCGCCGGAGTTGAGTGGAGAAGACGAGGG
TGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGGATTACCGGAGGGACTTTG
CTCGTGCGATTAATGAATATTTAGAGAAGCACTTGGTGGCGGCTGACTTG
ATGGTGTCATTGTTGAGTATGAGTAAGATGCACCATAACCCCACAATTAA
AGCACCGGTGCCCAGATTCTTCTATCAGCGAGAAGGGAGTTTTATGATCA
ATCAATCGGCGTTGTCTTCGGCAATAGCGGCGATTCCACCCTTGGAGGTA
TTGAGGGAGAGTGGGACGGAAGAGGAGCGAGGGGCAAGGGGGTTGCCATT
TGGGAGTTGTGTGTTGTTGCATCACTTGTTTTTCCGGGAGCGGGTGACGG
TGGTGGATGGGAGGGAGGCAGGGAGGGAGGGAGGATTGCGGACCGTAGGA
CAGAGTCCTGCTTCGTCACTGTTGCAGCCAGAACAATCTCCCCCCTCCCC
TTACTCCTCTCCCTCCTTAATCACCACCCTCTTCTCTAAAGCCGGCTTTA
ACACCGCCTCCTCGACCGATCTCCCGTGCATGGTATTTCCGCTGCATCAT
GCCCAAGACTCGCGCTTCACCGCCCTTTCTGAGAGACACGGGACTTGCTA
CGGCTTCCACGGCTCCCCCCCCATCAACTTCTTCTCAATCGTTTCCCTGG
GCTTGAGATCGTTAAGTGGCACAAAAGGGATGAAGAATGGGGCAGTTTTC
GGCGATGGGGTGTATGTGGCCTCGAAATGCGAGGTGGCGAGGAATTTTGG
TGGGTGGGGAGTCCCGGTGTGGAGGCATAGCCGCTTTGGGGTCGTCCCCG
GGGGAAAGGGAGGTGCACCTTTGTTTGCGTATCAGATTATTGCCTTGTGT
GAAGTTATTAACTTGCCGCAGTATCGGTGTGGGTTGACGGGAGGGGGCAG
CAGTGGCACACCAGCGCCTTCCACTTCTACCTTTTCCTCCGACTTTTTTT
CATCTTCTTCGAGCTGTCCCACTACGAGGCAGCGCCGACGAGGGAGCAAC
GGCACGAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGCAGCAG
TAGCAGCAGTAGCAGCAGTAGCAGCAAGAGCAGCAGCAGCAGTGAGTACT
GGGTTGTCGGTGACGACACCCACCTCGTTGTCCGCGCTCTCCTTCTCTTC
AAAGACCCCGCTGTTCTCCGTGGTCCCCAGCCTCTTCCTGCATCCTCCTC
TTCTGCCAATACCGTCATGACGCCGCTTCAAAACAATAATATCAATGTAC
TGCAACAACAGCAATGCCCGATCAACCCGCAACACCGTCCTTTTCACCCC
TTACCTCGTCCTCCCGTTGCACAACGACACATTTACTTGCAATTTATCGT
GTGGACCGTGCGGGTCATGCTTTTTGGCGTGGCCCTCATTATATTCCTCG
AGACGGTCGAAAATCTGTGGGTGCATCGGGGGGCATCTTGGGGTGTCGGG
AAGGATAGAAAAGGGAGGCGGAGCAAGGGGTGGTAG
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protein sequence of NO10G01420.1

>NO10G01420.1-protein ID=NO10G01420.1-protein|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp
MAASETEVESCLISKEVAHVLAVLAMRNNPMKEDSLKQIGSIQASSSSSS
FSSSQSYSSSPSLTIEIQRLEWLPQKRTLYLAAYPEVNLYASSSSSSFPL
ELTRAQQLLLSPPVVLEIYFPNLSSEPPFCFSTSDAGALVAERVNSSGSL
LPLDRSSLLHAVSKITAIIKQEVDSIWPPELSGEDEGGRVGRREGGVDYR
RDFARAINEYLEKHLVAADLMVSLLSMSKMHHNPTIKAPVPRFFYQREGS
FMINQSALSSAIAAIPPLEVLRESGTEEERGARGLPFGSCVLLHHLFFRE
RVTVVDGREAGREGGLRTVGQSPASSLLQPEQSPPSPYSSPSLITTLFSK
AGFNTASSTDLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSI
VSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFG
VVPGGKGGAPLFAYQIIALCEVINLPQYRCGLTGGGSSGTPAPSTSTFSS
DFFSSSSSCPTTRQRRRGSNGTSSSSSSSSSSSSSSSSSSSSSSSKSSSS
SEYWVVGDDTHLVVRALLLFKDPAVLRGPQPLPASSSSANTVMTPLQNNN
INVLQQQQCPINPQHRPFHPLPRPPVAQRHIYLQFIVWTVRVMLFGVALI
IFLETVENLWVHRGASWGVGKDRKGRRSKGW*
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mRNA from alignment at chr10:417717..420070+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01420.1 ID=NO10G01420.1|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp|location=Sequence derived from alignment at chr10:417717..420070+ (Nannochloropsis oceanica)
ACTACAGTCACACACAGGAAGTAAGCTGCAACAAGCCTCAACTCTCGCTT
CTCCAACAATCACCGGCACAAGCAGCAGTTCTCATCCACCATGGCGGCGT
CAGAAACTGAGGTGGAGTCCTGCTTGATCAGCAAGGAGGTAGCGCACGTC
CTGGCGGTGCTGGCGATGCGCAATAACCCTATGAAGGAGGACTCACTGAA
GGTACGTGTTCGAAGAGATGAGTGCGGTGGGAAGGAATGGGGGAGGTAGT
ATGTGCGTGCGCCAGTTCGCTGACACTGGCTGCGAACACACGATAATAAG
TGGTAACGTTCGGCATTGAAAGCGGCATCTGTCTTGATTGAAGTGCAGGT
GCCCACAATCCTAGAAATCCTCCCCGTTTAACCCACTGGTGGCTCCCTCC
CGTCGAACCCACAAAACAGCAAATCGGATCCATCCAAGCCTCTTCCTCCT
CCAGCTCCTTCTCCTCCTCCCAATCATACTCCTCCTCTCCCTCCCTCACC
ATCGAAATTCAACGTCTAGAATGGCTCCCCCAGAAGCGGACACTTTATCT
AGCCGCCTACCCTGAGGTCAATCTCTACGCCTCTTCCTCCTCCTCCTCTT
TCCCTCTCGAGCTCACCCGAGCCCAACAGCTCCTCCTCTCTCCTCCGGTG
GTGCTCGAGATTTATTTTCCCAATTTATCTTCCGAGCCACCCTTCTGCTT
TTCCACTTCAGATGCTGGCGCGTTGGTCGCAGAGCGGGTGAACAGCAGCG
GTAGCCTCTTGCCTCTAGATCGATCGTCATTATTGCATGCCGTGTCCAAA
ATTACTGCGATTATCAAGCAGGAAGTGGATAGCATTTGGCCGCCGGAGTT
GAGTGGAGAAGACGAGGGTGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGG
ATTACCGGAGGGACTTTGCTCGTGCGATTAATGAATATTTAGAGAAGCAC
TTGGTGGCGGCTGACTTGATGGTGTCATTGTTGAGTATGAGTAAGATGCA
CCATAACCCCACAATTAAAGCACCGGTGCCCAGATTCTTCTATCAGCGAG
AAGGGAGTTTTATGATCAATCAATCGGCGTTGTCTTCGGCAATAGCGGCG
ATTCCACCCTTGGAGGTATTGAGGGAGAGTGGGACGGAAGAGGAGCGAGG
GGCAAGGGGGTTGCCATTTGGGAGTTGTGTGTTGTTGCATCACTTGTTTT
TCCGGGAGCGGGTGACGGTGGTGGATGGGAGGGAGGCAGGGAGGGAGGGA
GGATTGCGGACCGTAGGACAGAGTCCTGCTTCGTCACTGTTGCAGCCAGA
ACAATCTCCCCCCTCCCCTTACTCCTCTCCCTCCTTAATCACCACCCTCT
TCTCTAAAGCCGGCTTTAACACCGCCTCCTCGACCGATCTCCCGTGCATG
GTATTTCCGCTGCATCATGCCCAAGACTCGCGCTTCACCGCCCTTTCTGA
GAGACACGGGACTTGCTACGGCTTCCACGGCTCCCCCCCCATCAACTTCT
TCTCAATCGTTTCCCTGGGCTTGAGATCGTTAAGTGGCACAAAAGGGATG
AAGAATGGGGCAGTTTTCGGCGATGGGGTGTATGTGGCCTCGAAATGCGA
GGTGGCGAGGAATTTTGGTGGGTGGGGAGTCCCGGTGTGGAGGCATAGCC
GCTTTGGGGTCGTCCCCGGGGGAAAGGGAGGTGCACCTTTGTTTGCGTAT
CAGATTATTGCCTTGTGTGAAGTTATTAACTTGCCGCAGTATCGGTGTGG
GTTGACGGGAGGGGGCAGCAGTGGCACACCAGCGCCTTCCACTTCTACCT
TTTCCTCCGACTTTTTTTCATCTTCTTCGAGCTGTCCCACTACGAGGCAG
CGCCGACGAGGGAGCAACGGCACGAGCAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAAGAGCA
GCAGCAGCAGTGAGTACTGGGTTGTCGGTGACGACACCCACCTCGTTGTC
CGCGCTCTCCTTCTCTTCAAAGACCCCGCTGTTCTCCGTGGTCCCCAGCC
TCTTCCTGCATCCTCCTCTTCTGCCAATACCGTCATGACGCCGCTTCAAA
ACAATAATATCAATGTACTGCAACAACAGCAATGCCCGATCAACCCGCAA
CACCGTCCTTTTCACCCCTTACCTCGTCCTCCCGTTGCACAACGACACAT
TTACTTGCAATTTATCGTGTGGACCGTGCGGGTCATGCTTTTTGGCGTGG
CCCTCATTATATTCCTCGAGACGGTCGAAAATCTGTGGGTGCATCGGGGG
GCATCTTGGGGTGTCGGGAAGGATAGAAAAGGGAGGCGGAGCAAGGGGTG
GTAG
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Coding sequence (CDS) from alignment at chr10:417717..420070+

>NO10G01420.1 ID=NO10G01420.1|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at chr10:417717..420070+ (Nannochloropsis oceanica)
ATGGCGGCGTCAGAAACTGAGGTGGAGTCCTGCTTGATCAGCAAGGAGGT
AGCGCACGTCCTGGCGGTGCTGGCGATGCGCAATAACCCTATGAAGGAGG
ACTCACTGAAGCAAATCGGATCCATCCAAGCCTCTTCCTCCTCCAGCTCC
TTCTCCTCCTCCCAATCATACTCCTCCTCTCCCTCCCTCACCATCGAAAT
TCAACGTCTAGAATGGCTCCCCCAGAAGCGGACACTTTATCTAGCCGCCT
ACCCTGAGGTCAATCTCTACGCCTCTTCCTCCTCCTCCTCTTTCCCTCTC
GAGCTCACCCGAGCCCAACAGCTCCTCCTCTCTCCTCCGGTGGTGCTCGA
GATTTATTTTCCCAATTTATCTTCCGAGCCACCCTTCTGCTTTTCCACTT
CAGATGCTGGCGCGTTGGTCGCAGAGCGGGTGAACAGCAGCGGTAGCCTC
TTGCCTCTAGATCGATCGTCATTATTGCATGCCGTGTCCAAAATTACTGC
GATTATCAAGCAGGAAGTGGATAGCATTTGGCCGCCGGAGTTGAGTGGAG
AAGACGAGGGTGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGGATTACCGG
AGGGACTTTGCTCGTGCGATTAATGAATATTTAGAGAAGCACTTGGTGGC
GGCTGACTTGATGGTGTCATTGTTGAGTATGAGTAAGATGCACCATAACC
CCACAATTAAAGCACCGGTGCCCAGATTCTTCTATCAGCGAGAAGGGAGT
TTTATGATCAATCAATCGGCGTTGTCTTCGGCAATAGCGGCGATTCCACC
CTTGGAGGTATTGAGGGAGAGTGGGACGGAAGAGGAGCGAGGGGCAAGGG
GGTTGCCATTTGGGAGTTGTGTGTTGTTGCATCACTTGTTTTTCCGGGAG
CGGGTGACGGTGGTGGATGGGAGGGAGGCAGGGAGGGAGGGAGGATTGCG
GACCGTAGGACAGAGTCCTGCTTCGTCACTGTTGCAGCCAGAACAATCTC
CCCCCTCCCCTTACTCCTCTCCCTCCTTAATCACCACCCTCTTCTCTAAA
GCCGGCTTTAACACCGCCTCCTCGACCGATCTCCCGTGCATGGTATTTCC
GCTGCATCATGCCCAAGACTCGCGCTTCACCGCCCTTTCTGAGAGACACG
GGACTTGCTACGGCTTCCACGGCTCCCCCCCCATCAACTTCTTCTCAATC
GTTTCCCTGGGCTTGAGATCGTTAAGTGGCACAAAAGGGATGAAGAATGG
GGCAGTTTTCGGCGATGGGGTGTATGTGGCCTCGAAATGCGAGGTGGCGA
GGAATTTTGGTGGGTGGGGAGTCCCGGTGTGGAGGCATAGCCGCTTTGGG
GTCGTCCCCGGGGGAAAGGGAGGTGCACCTTTGTTTGCGTATCAGATTAT
TGCCTTGTGTGAAGTTATTAACTTGCCGCAGTATCGGTGTGGGTTGACGG
GAGGGGGCAGCAGTGGCACACCAGCGCCTTCCACTTCTACCTTTTCCTCC
GACTTTTTTTCATCTTCTTCGAGCTGTCCCACTACGAGGCAGCGCCGACG
AGGGAGCAACGGCACGAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCA
GTAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAAGAGCAGCAGCAGC
AGTGAGTACTGGGTTGTCGGTGACGACACCCACCTCGTTGTCCGCGCTCT
CCTTCTCTTCAAAGACCCCGCTGTTCTCCGTGGTCCCCAGCCTCTTCCTG
CATCCTCCTCTTCTGCCAATACCGTCATGACGCCGCTTCAAAACAATAAT
ATCAATGTACTGCAACAACAGCAATGCCCGATCAACCCGCAACACCGTCC
TTTTCACCCCTTACCTCGTCCTCCCGTTGCACAACGACACATTTACTTGC
AATTTATCGTGTGGACCGTGCGGGTCATGCTTTTTGGCGTGGCCCTCATT
ATATTCCTCGAGACGGTCGAAAATCTGTGGGTGCATCGGGGGGCATCTTG
GGGTGTCGGGAAGGATAGAAAAGGGAGGCGGAGCAAGGGGTGGTAG
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Synonyms
Publications