NO10G01410.1, NO10G01410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01410.1
Unique NameNO10G01410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3138
Alignment locationchr10:413529..416666 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:413529..416666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G01410.1 vs.
Match: EWM25372.1 (serine threonine-protein phosphatase 6 regulatory [Nannochloropsis gaditana])

HSP 1 Score: 446.8 bits (1148), Expect = 8.300e-122
Identity = 274/430 (63.72%), Postives = 304/430 (70.70%), Query Frame = 0 
Query:    1 MFAFLSQGPLAELLAPVKAPHQQLHQAIEEHKHDIAQQLLQEGVYFNAPDSGRGDALPIHTACQAGNQTMIDALLQMGADLTGAKDRYGNSTLHAAAKGGKIETVKFLVAQGVDVSRRNTYRQTAYDVAESHVVRQYLLPLQLRSEPEPAMGSLASVHNPDVIRDYSNLPPPPTAMSYSAQAPPLPQGMQPQQQQQQPQQGQRKAPVFDRPIAADGFHCSVGNAELEAKYGHVKKDIQMAPPPVSGSGLPQDP---QQQQQQQQQQQHQRATANPTQYSAFAAYGGRPPPRYVTYNATDNTSAPFIPSSAPPPPPPPMQQQHQYQQPFQHRQPFEQQHQQQQQQPGVYMSNANGTNASPVPSSPPNHSAPSTSGN---APSPSSIAHSSSASPSLPSPT-PGGYRNSPLSSPPPPPP-----SLPALQPP 419
            MFAFLSQGPL ELLAPVKAPHQQLHQAIEEH+HD A QLLQEGVYFNAPD+GRGDALPIHTACQAGNQTMID L++MGAD   A DR+GN TLHAAAKGGK+ETVKFL+A G+DVSRRN YRQTAYDVAESH+VRQ+LLPLQLR+EPEPA GSLA+VHNPDVIRDYSNLPPPPTA SYSA  PP             P Q  + AP  DRPI ADGFHCSVGN EL AKYGH+K DI MAPPP S SGLP        +  ++ Q+   R  ANPTQYSAFAAYGGRPPPRYVTYNA DNTSAPFI  + PPPP          QQP     P     QQ   Q    +    G NA    SSPP  ++P ++ +   APSP+  + S  +S +  SP  P GYR SPL  PPPPP      SLP  +PP
Sbjct:   22 MFAFLSQGPLGELLAPVKAPHQQLHQAIEEHRHDKANQLLQEGVYFNAPDAGRGDALPIHTACQAGNQTMIDKLMEMGADARSATDRHGNGTLHAAAKGGKLETVKFLLAHGLDVSRRNAYRQTAYDVAESHIVRQFLLPLQLRAEPEPAAGSLAAVHNPDVIRDYSNLPPPPTASSYSAPPPPASLHGMSSSGTHLP-QASKPAPKVDRPIVADGFHCSVGNPELAAKYGHIKTDIPMAPPP-SASGLPARTCAGTGEGGEEGQRGPPRPAANPTQYSAFAAYGGRPPPRYVTYNANDNTSAPFIHPAGPPPP---------VQQP-----PGPPHWQQMHHQQSGGLLTHTGRNA----SSPPQTASPFSNESFQQAPSPAVPSGSPPSSSATSSPVPPAGYRASPLPPPPPPPHPSRHCSLPNSRPP 431
The following BLAST results are available for this feature:
BLAST of NO10G01410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25372.18.300e-12263.72serine threonine-protein phosphatase 6 regulatory ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01410NO10G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01410.1NO10G01410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01410.1.cds1NO10G01410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01410.1 ID=NO10G01410.1|Name=NO10G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3138bp
GAGTGAGATTTGTTCATTTTACACTTGCTCTTTAAGCTCTTGCTCTCGCA
CTTTACAGGGATCCTCGACATCCATAGCTGCAACTGTTTCTTCATCCCTT
TCTCTCTACCCTTCTTCGTCTCCAGCATCTCATCCCGCACCGCAAGTAGG
GAGGAGGTCATGCAAGTCTCTCGGTCACTAATCAAAAAACTGAATCTTGA
CGAATTACAGTTGTGATCCAGCCTTGATTGGTTGGGCATCCTATCACTAC
CAAGCATGATTTCAAAGGCAAATGTCGCTGAGAAAGCATTTATGCCCGCG
TCTATCGAGTTGGCGGGGCCAACTTGGCCCATCATCGTCATCATCCACGA
CCCAGAGAGCTGCATCATGCCAAGCTCCATAGGACATAGTTCTCCTTCGC
CTTGGAGACCGCCTTTGGACTGACATACACGGCAGGCGATGTCGCATCAA
GGTCACGGACACCATGCCTGTGTCCCTGTCTTGCGTGTCCATGCCTCAGT
GGCCCTCGAAGTCTTGTGTCCTTTTTTGATGAGCCGGTAATGGTGGCCGC
GCTCGTCGCTCGCGCGAGTAACCGCTATAGTGTGAGCCTCTTTCCCCAAG
CCCTTCCCACCCATCAGCGGCACGCACACGCCACAAACGGACCCTGTCAT
GTGTTTTGCCAAGATGTAGGGCGTTGGCCAGGTCGGTGTGCTTTTCCAGG
GCTCAATACAACCACAAGGTCATTCCCCCCTCCCAGAGTCATCATTTAGC
TACTACCTGCCTTGCACCTATGCACTACACGCCTCACTACTCATCCCGGA
GCCTAGCGGACGGCTTGTGTTCCCGCGCTGCCTTTCAAGCGCGTCCCTAG
CTGTCTGCCTATCGTCCCCCTTCTACCAACTGCAACGCTATGCGGCAATT
TGTGAAATATTTCTCATCCTGTACGCCTTCTGCGCACAGCTCTTGCTACT
CCCTTCACTTTCTTTCGGGCTCACGTGCAATCTCACCACACTGTCCCCCA
TCCCCCTCCCTTCCCAGCAAGTAGAAAAATGTTCGCCTTTCTCTCCCAAG
GCCCCCTCGCCGAGCTCCTCGCCCCGGTCAAAGCTCCCCACCAACAACTG
CACCAGGCCATCGAAGAGCACAAGCACGACATAGCTCAGCAACTCTTGCA
AGAAGGAGTTTACTTCAACGCCCCCGACTCTGGACGAGGAGATGCTTTAC
CCATCCATACGGCCTGTCAAGCCGGCAACCAAACCATGATCGACGCCCTC
CTCCAAATGGGCGCCGACCTTACGGGTGCCAAAGACCGGTATGGAAATAG
CACCCTCCATGCAGCTGCCAAAGGTGGAAAAATCGAGACTGTCAAATTCC
TCGTTGCTCAAGGAGTAGATGTATCTCGTCGAAACACCTACCGACAAACG
GCCTACGACGTGGCGGAATCCCATGTCGTGCGTCAATATCTCCTTCCCCT
TCAGCTCCGCTCCGAGCCCGAGCCCGCTATGGGTAGCCTTGCCTCGGTGC
ACAACCCCGACGTGATTCGGGACTATTCCAACCTGCCCCCACCCCCCACC
GCCATGTCGTACTCGGCCCAAGCTCCTCCCCTGCCACAGGGCATGCAGCC
GCAGCAACAGCAGCAGCAGCCACAACAGGGGCAGCGGAAAGCACCAGTCT
TCGACCGACCCATCGCTGCGGACGGATTTCACTGCAGCGTGGGTAATGCA
GAGCTTGAGGCAAAGTACGGCCATGTCAAAAAAGACATCCAAATGGCCCC
TCCCCCCGTCAGCGGGTCCGGCCTCCCCCAAGACCCCCAGCAGCAGCAGC
AGCAGCAGCAACAACAACAACATCAGCGGGCTACGGCAAATCCGACCCAA
TATTCGGCTTTTGCTGCGTACGGTGGTCGCCCCCCTCCTCGCTATGTCAC
CTACAACGCGACAGACAACACCTCCGCTCCTTTCATCCCTTCCTCCGCCC
CTCCTCCACCCCCCCCACCCATGCAGCAGCAACATCAGTATCAGCAGCCA
TTCCAACACAGGCAGCCGTTTGAGCAGCAGCATCAGCAGCAGCAGCAGCA
GCCTGGAGTGTACATGAGCAACGCCAACGGCACCAACGCCTCCCCCGTTC
CTTCCTCCCCTCCCAACCATTCCGCCCCCTCGACATCGGGCAACGCCCCA
TCCCCTTCTTCCATCGCTCACTCTTCCTCAGCATCTCCTTCTCTCCCTTC
TCCCACTCCTGGAGGATACCGCAACAGCCCTCTTTCCTCTCCCCCTCCCC
CTCCTCCCTCCCTCCCCGCCCTACAACCACCCAAACTCCCCTCCTCCATG
CAATTCCATCAGCAGCAGCAGCAGCAACAGCAGCTACAGCAACCCTCTAC
CAGGCTAGTGTGTAACATCCCAACCCTACCCCCTGCTAATGTTGTGAATG
TCTTTACCCCTATGGCAGACAATGGAGAAGATTGTGTTTCTCTGGACGGA
TAGAGGAGGATACGGAGGAGGGGGGGGGGGGAAGGGATGGACATACAACG
CGAAAGATTATGGTTGGACGAAAGGAGATTGCGGTAAAATCACTTAGAGG
AGAAGGTGGAGGGTATTAGGAGAAGTGGGAAAAATTAGTGGGCTGAGAGG
ATGGAAATTGAAATATCGGAGGAGGGAGGAGGGGAGGGAGGGATGGCCAT
GTTTTTGTTTGTTCCACTTCCTTTATTGAATGAGCTATTCCTCATAGTTA
TACATGCTTTATGTTTGTGTGCTTTAGATGTATAACTGTACGTCTTTGTT
TGCGATTTATGATTGGTAAAAAAGGGAAGAAACGGCGGAAAGGGGGAAAG
GGGTGAAAAGAAGTTGCCATTTCTTAGCAGGAGCAAGATGACAAGGAAAA
AGACAAGTGGAGAATTTTAATCGATATGGATAGAAATAAATGGGAGGTGG
CTGAGGAAGTGGACGACGCCTTAAATGAAGAAGAGAGGTGTTGAGGATAT
ATGAGGGATAAGGAGGGAGCTGAGGGACATTAGGGTATAGAGTAAAGGGA
AGAGAAGAGTTGATTTATGAGAAGAAACCGTCACGCATGTCAAAGACAAG
CGAAAAGAATATAAATTAATGAGGGAAAAAACCTATTGGGAAAGATGGGG
TATGGCTGAGTTGCAGCCCACCTTGTTGCTTCCCTCTC
back to top

protein sequence of NO10G01410.1

>NO10G01410.1-protein ID=NO10G01410.1-protein|Name=NO10G01410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp
MFAFLSQGPLAELLAPVKAPHQQLHQAIEEHKHDIAQQLLQEGVYFNAPD
SGRGDALPIHTACQAGNQTMIDALLQMGADLTGAKDRYGNSTLHAAAKGG
KIETVKFLVAQGVDVSRRNTYRQTAYDVAESHVVRQYLLPLQLRSEPEPA
MGSLASVHNPDVIRDYSNLPPPPTAMSYSAQAPPLPQGMQPQQQQQQPQQ
GQRKAPVFDRPIAADGFHCSVGNAELEAKYGHVKKDIQMAPPPVSGSGLP
QDPQQQQQQQQQQQHQRATANPTQYSAFAAYGGRPPPRYVTYNATDNTSA
PFIPSSAPPPPPPPMQQQHQYQQPFQHRQPFEQQHQQQQQQPGVYMSNAN
GTNASPVPSSPPNHSAPSTSGNAPSPSSIAHSSSASPSLPSPTPGGYRNS
PLSSPPPPPPSLPALQPPKLPSSMQFHQQQQQQQQLQQPSTRLVCNIPTL
PPANVVNVFTPMADNGEDCVSLDG*
back to top

mRNA from alignment at chr10:413529..416666+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01410.1 ID=NO10G01410.1|Name=NO10G01410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3138bp|location=Sequence derived from alignment at chr10:413529..416666+ (Nannochloropsis oceanica)
GAGTGAGATTTGTTCATTTTACACTTGCTCTTTAAGCTCTTGCTCTCGCA
CTTTACAGGGATCCTCGACATCCATAGCTGCAACTGTTTCTTCATCCCTT
TCTCTCTACCCTTCTTCGTCTCCAGCATCTCATCCCGCACCGCAAGTAGG
GAGGAGGTCATGCAAGTCTCTCGGTCACTAATCAAAAAACTGAATCTTGA
CGAATTACAGTTGTGATCCAGCCTTGATTGGTTGGGCATCCTATCACTAC
CAAGCATGATTTCAAAGGCAAATGTCGCTGAGAAAGCATTTATGCCCGCG
TCTATCGAGTTGGCGGGGCCAACTTGGCCCATCATCGTCATCATCCACGA
CCCAGAGAGCTGCATCATGCCAAGCTCCATAGGACATAGTTCTCCTTCGC
CTTGGAGACCGCCTTTGGACTGACATACACGGCAGGCGATGTCGCATCAA
GGTCACGGACACCATGCCTGTGTCCCTGTCTTGCGTGTCCATGCCTCAGT
GGCCCTCGAAGTCTTGTGTCCTTTTTTGATGAGCCGGTAATGGTGGCCGC
GCTCGTCGCTCGCGCGAGTAACCGCTATAGTGTGAGCCTCTTTCCCCAAG
CCCTTCCCACCCATCAGCGGCACGCACACGCCACAAACGGACCCTGTCAT
GTGTTTTGCCAAGATGTAGGGCGTTGGCCAGGTCGGTGTGCTTTTCCAGG
GCTCAATACAACCACAAGGTCATTCCCCCCTCCCAGAGTCATCATTTAGC
TACTACCTGCCTTGCACCTATGCACTACACGCCTCACTACTCATCCCGGA
GCCTAGCGGACGGCTTGTGTTCCCGCGCTGCCTTTCAAGCGCGTCCCTAG
CTGTCTGCCTATCGTCCCCCTTCTACCAACTGCAACGCTATGCGGCAATT
TGTGAAATATTTCTCATCCTGTACGCCTTCTGCGCACAGCTCTTGCTACT
CCCTTCACTTTCTTTCGGGCTCACGTGCAATCTCACCACACTGTCCCCCA
TCCCCCTCCCTTCCCAGCAAGTAGAAAAATGTTCGCCTTTCTCTCCCAAG
GCCCCCTCGCCGAGCTCCTCGCCCCGGTCAAAGCTCCCCACCAACAACTG
CACCAGGCCATCGAAGAGCACAAGCACGACATAGCTCAGCAACTCTTGCA
AGAAGGAGTTTACTTCAACGCCCCCGACTCTGGACGAGGAGATGCTTTAC
CCATCCATACGGCCTGTCAAGCCGGCAACCAAACCATGATCGACGCCCTC
CTCCAAATGGGCGCCGACCTTACGGGTGCCAAAGACCGGTATGGAAATAG
CACCCTCCATGCAGCTGCCAAAGGTGGAAAAATCGAGACTGTCAAATTCC
TCGTTGCTCAAGGAGTAGATGTATCTCGTCGAAACACCTACCGACAAACG
GCCTACGACGTGGCGGAATCCCATGTCGTGCGTCAATATCTCCTTCCCCT
TCAGCTCCGCTCCGAGCCCGAGCCCGCTATGGGTAGCCTTGCCTCGGTGC
ACAACCCCGACGTGATTCGGGACTATTCCAACCTGCCCCCACCCCCCACC
GCCATGTCGTACTCGGCCCAAGCTCCTCCCCTGCCACAGGGCATGCAGCC
GCAGCAACAGCAGCAGCAGCCACAACAGGGGCAGCGGAAAGCACCAGTCT
TCGACCGACCCATCGCTGCGGACGGATTTCACTGCAGCGTGGGTAATGCA
GAGCTTGAGGCAAAGTACGGCCATGTCAAAAAAGACATCCAAATGGCCCC
TCCCCCCGTCAGCGGGTCCGGCCTCCCCCAAGACCCCCAGCAGCAGCAGC
AGCAGCAGCAACAACAACAACATCAGCGGGCTACGGCAAATCCGACCCAA
TATTCGGCTTTTGCTGCGTACGGTGGTCGCCCCCCTCCTCGCTATGTCAC
CTACAACGCGACAGACAACACCTCCGCTCCTTTCATCCCTTCCTCCGCCC
CTCCTCCACCCCCCCCACCCATGCAGCAGCAACATCAGTATCAGCAGCCA
TTCCAACACAGGCAGCCGTTTGAGCAGCAGCATCAGCAGCAGCAGCAGCA
GCCTGGAGTGTACATGAGCAACGCCAACGGCACCAACGCCTCCCCCGTTC
CTTCCTCCCCTCCCAACCATTCCGCCCCCTCGACATCGGGCAACGCCCCA
TCCCCTTCTTCCATCGCTCACTCTTCCTCAGCATCTCCTTCTCTCCCTTC
TCCCACTCCTGGAGGATACCGCAACAGCCCTCTTTCCTCTCCCCCTCCCC
CTCCTCCCTCCCTCCCCGCCCTACAACCACCCAAACTCCCCTCCTCCATG
CAATTCCATCAGCAGCAGCAGCAGCAACAGCAGCTACAGCAACCCTCTAC
CAGGCTAGTGTGTAACATCCCAACCCTACCCCCTGCTAATGTTGTGAATG
TCTTTACCCCTATGGCAGACAATGGAGAAGATTGTGTTTCTCTGGACGGA
TAGAGGAGGATACGGAGGAGGGGGGGGGGGGAAGGGATGGACATACAACG
CGAAAGATTATGGTTGGACGAAAGGAGATTGCGGTAAAATCACTTAGAGG
AGAAGGTGGAGGGTATTAGGAGAAGTGGGAAAAATTAGTGGGCTGAGAGG
ATGGAAATTGAAATATCGGAGGAGGGAGGAGGGGAGGGAGGGATGGCCAT
GTTTTTGTTTGTTCCACTTCCTTTATTGAATGAGCTATTCCTCATAGTTA
TACATGCTTTATGTTTGTGTGCTTTAGATGTATAACTGTACGTCTTTGTT
TGCGATTTATGATTGGTAAAAAAGGGAAGAAACGGCGGAAAGGGGGAAAG
GGGTGAAAAGAAGTTGCCATTTCTTAGCAGGAGCAAGATGACAAGGAAAA
AGACAAGTGGAGAATTTTAATCGATATGGATAGAAATAAATGGGAGGTGG
CTGAGGAAGTGGACGACGCCTTAAATGAAGAAGAGAGGTGTTGAGGATAT
ATGAGGGATAAGGAGGGAGCTGAGGGACATTAGGGTATAGAGTAAAGGGA
AGAGAAGAGTTGATTTATGAGAAGAAACCGTCACGCATGTCAAAGACAAG
CGAAAAGAATATAAATTAATGAGGGAAAAAACCTATTGGGAAAGATGGGG
TATGGCTGAGTTGCAGCCCACCTTGTTGCTTCCCTCTC
back to top

Coding sequence (CDS) from alignment at chr10:413529..416666+

>NO10G01410.1 ID=NO10G01410.1|Name=NO10G01410.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr10:413529..416666+ (Nannochloropsis oceanica)
ATGTTCGCCTTTCTCTCCCAAGGCCCCCTCGCCGAGCTCCTCGCCCCGGT
CAAAGCTCCCCACCAACAACTGCACCAGGCCATCGAAGAGCACAAGCACG
ACATAGCTCAGCAACTCTTGCAAGAAGGAGTTTACTTCAACGCCCCCGAC
TCTGGACGAGGAGATGCTTTACCCATCCATACGGCCTGTCAAGCCGGCAA
CCAAACCATGATCGACGCCCTCCTCCAAATGGGCGCCGACCTTACGGGTG
CCAAAGACCGGTATGGAAATAGCACCCTCCATGCAGCTGCCAAAGGTGGA
AAAATCGAGACTGTCAAATTCCTCGTTGCTCAAGGAGTAGATGTATCTCG
TCGAAACACCTACCGACAAACGGCCTACGACGTGGCGGAATCCCATGTCG
TGCGTCAATATCTCCTTCCCCTTCAGCTCCGCTCCGAGCCCGAGCCCGCT
ATGGGTAGCCTTGCCTCGGTGCACAACCCCGACGTGATTCGGGACTATTC
CAACCTGCCCCCACCCCCCACCGCCATGTCGTACTCGGCCCAAGCTCCTC
CCCTGCCACAGGGCATGCAGCCGCAGCAACAGCAGCAGCAGCCACAACAG
GGGCAGCGGAAAGCACCAGTCTTCGACCGACCCATCGCTGCGGACGGATT
TCACTGCAGCGTGGGTAATGCAGAGCTTGAGGCAAAGTACGGCCATGTCA
AAAAAGACATCCAAATGGCCCCTCCCCCCGTCAGCGGGTCCGGCCTCCCC
CAAGACCCCCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACATCAGCG
GGCTACGGCAAATCCGACCCAATATTCGGCTTTTGCTGCGTACGGTGGTC
GCCCCCCTCCTCGCTATGTCACCTACAACGCGACAGACAACACCTCCGCT
CCTTTCATCCCTTCCTCCGCCCCTCCTCCACCCCCCCCACCCATGCAGCA
GCAACATCAGTATCAGCAGCCATTCCAACACAGGCAGCCGTTTGAGCAGC
AGCATCAGCAGCAGCAGCAGCAGCCTGGAGTGTACATGAGCAACGCCAAC
GGCACCAACGCCTCCCCCGTTCCTTCCTCCCCTCCCAACCATTCCGCCCC
CTCGACATCGGGCAACGCCCCATCCCCTTCTTCCATCGCTCACTCTTCCT
CAGCATCTCCTTCTCTCCCTTCTCCCACTCCTGGAGGATACCGCAACAGC
CCTCTTTCCTCTCCCCCTCCCCCTCCTCCCTCCCTCCCCGCCCTACAACC
ACCCAAACTCCCCTCCTCCATGCAATTCCATCAGCAGCAGCAGCAGCAAC
AGCAGCTACAGCAACCCTCTACCAGGCTAGTGTGTAACATCCCAACCCTA
CCCCCTGCTAATGTTGTGAATGTCTTTACCCCTATGGCAGACAATGGAGA
AGATTGTGTTTCTCTGGACGGATAG
back to top
Synonyms
Publications