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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:350382..351782 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01180.1 vs.
Match: EWM25410.1 (Glutaredoxin [Nannochloropsis gaditana]) HSP 1 Score: 479.9 bits (1234), Expect = 7.600e-132 Identity = 261/407 (64.13%), Postives = 309/407 (75.92%), Query Frame = 0
Query: 2 LHRTVAASTVSRCP-LATTSPAAASAAASALMSPGCRRSSHSHHDGNNSHSKRRDYRGPLLVGGSLVGASTLQYYLHQRAFTSPVILGQGHAHAQLVASTSAATTIGAAAAATFSTTAATSSPATNATTSTTPSPTMHASSVASRPLSSSASTSAPTSYSSSANPLEGLRITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASSCVHAE 408
L R + S ++R +A P A++A+ + G RRS +S SKRRDYRGPLLVGGSLVGAST+Q YLH RAF+SP +LG A QL+ S S+ T IGAAAAA + ++ + + A+ A ST P+ +++++ T S +S NPLEGLRITLYQYKICPFCCKVKAVLD+YK+PYET+DVNPLTKAEIKFS+DYRKVPIAR+G EVV DS +IV +I D+L AA VAP ++LD FF+P+A RWAEWAD ELAVLLFPNITR+FGES+QAFSYV +VPHFS LDKL+NQW+GATAMWAAQGKIKKKYNI DER ALF AL+ W+ EVG KPFL G+ PNVGDL VYACI AIEGLDA KDL+ANT I WYTRVEHAIGASSCV AE
Sbjct: 3 LRRALGISHIARSHRVALVMPDASTASYFPACASG-RRSFYS--TSGRKQSKRRDYRGPLLVGGSLVGASTIQCYLHHRAFSSPTVLGPNQARNQLIVSASSVTAIGAAAAAALAFSSTSMAAASAAAPSTVPTALQASNAISP--------TQDLQSQPASLNPLEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRAE 398
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01180.1 ID=NO10G01180.1|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp ACAGCAATACAGTAAGTACTTCATCGCCGCGACCTGGGAGTCCGGACGAT CCTTCGTCGGGTGCTGTTGCTGCTAGTCAGAAAAATTGTCATGTTGCATC GGACTGTCGCCGCCTCTACCGTAAGCCGGTGCCCCCTGGCCACCACGTCC CCTGCAGCTGCCTCCGCTGCGGCTTCTGCTCTGATGTCCCCCGGCTGCCG GCGGTCGTCTCACAGCCACCACGACGGCAACAACTCGCACAGCAAACGTC GAGATTATCGAGGCCCCTTGCTCGTTGGCGGCTCGTTAGTTGGGGCATCG ACGCTCCAGTACTACCTCCACCAACGAGCGTTCACTAGTCCCGTGATTTT GGGGCAAGGACATGCCCATGCGCAGCTCGTCGCCTCAACTTCCGCGGCCA CCACCATTGGAGCAGCAGCGGCCGCCACCTTTTCGACCACGGCAGCAACC TCCTCACCGGCCACCAATGCAACTACCAGCACCACACCATCTCCGACCAT GCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCACAT CCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGCGG ATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAGGC TGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCCTC TTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAATT GCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGCAA GATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATTGG ACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATATG GAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAATC ATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCTTG ATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCACAG GGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTGTT TGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTTGA GCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTCGA GCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGGAT AGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCGTCGTCGTGTG TGCATGCGGAGTAAGATTGATAAAAGGACTGGGCGAGGTAGGCTGATGGG ATTGGAAGAAAATGGCAGGGAAAGAAAAAAAAGAATGGGATGATTTTGCA A back to topprotein sequence of NO10G01180.1 >NO10G01180.1-protein ID=NO10G01180.1-protein|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp MLHRTVAASTVSRCPLATTSPAAASAAASALMSPGCRRSSHSHHDGNNSH SKRRDYRGPLLVGGSLVGASTLQYYLHQRAFTSPVILGQGHAHAQLVAST SAATTIGAAAAATFSTTAATSSPATNATTSTTPSPTMHASSVASRPLSSS ASTSAPTSYSSSANPLEGLRITLYQYKICPFCCKVKAVLDYYKIPYETMD VNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPA KELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHF SMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNK PFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGA SSCVHAE* back to topmRNA from alignment at chr10:350382..351782- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01180.1 ID=NO10G01180.1|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp|location=Sequence derived from alignment at chr10:350382..351782- (Nannochloropsis oceanica) ACAGCAATACAGTAAGTACTTCATCGCCGCGACCTGGGAGTCCGGACGAT
CCTTCGTCGGGTGCTGTTGCTGCTAGTCAGAAAAATTGTCATGTTGCATC
GGACTGTCGCCGCCTCTACCGTAAGCCGGTGCCCCCTGGCCACCACGTCC
CCTGCAGCTGCCTCCGCTGCGGCTTCTGCTCTGATGTCCCCCGGCTGCCG
GCGGTCGTCTCACAGCCACCACGACGGCAACAACTCGCACAGCAAACGTC
GAGATTATCGAGGCCCCTTGCTCGTTGGCGGCTCGTTAGTTGGGGCATCG
ACGCTCCAGTACTACCTCCACCAACGAGCGTTCACTAGTCCCGTGATTTT
GGGGCAAGGACATGCCCATGCGCAGCTCGTCGCCTCAACTTCCGCGGCCA
CCACCATTGGAGCAGCAGCGGCCGCCACCTTTTCGACCACGGCAGCAACC
TCCTCACCGGCCACCAATGCAACTACCAGCACCACACCATCTCCGACCAT
GCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCACAT
CCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGCGG
ATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAGGC
TGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCCTC
TTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAATT
GCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGCAA
GATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATTGG
ACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATATG
GAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAATC
ATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCTTG
ATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCACAG
GGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTGTT
TGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTTGA
GCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTCGA
GCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGGAT
AGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCGTCGTCGTGTG
TGCATGCGGAGTAAGATTGATAAAAGGACTGGGCGAGGTAGGCTGATGGG
ATTGGAAGAAAATGGCAGGGAAAGAAAAAAAAGAATGGGATGATTTTGCA
A back to topCoding sequence (CDS) from alignment at chr10:350382..351782- >NO10G01180.1 ID=NO10G01180.1|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr10:350382..351782- (Nannochloropsis oceanica) ATGTTGCATCGGACTGTCGCCGCCTCTACCGTAAGCCGGTGCCCCCTGGC CACCACGTCCCCTGCAGCTGCCTCCGCTGCGGCTTCTGCTCTGATGTCCC CCGGCTGCCGGCGGTCGTCTCACAGCCACCACGACGGCAACAACTCGCAC AGCAAACGTCGAGATTATCGAGGCCCCTTGCTCGTTGGCGGCTCGTTAGT TGGGGCATCGACGCTCCAGTACTACCTCCACCAACGAGCGTTCACTAGTC CCGTGATTTTGGGGCAAGGACATGCCCATGCGCAGCTCGTCGCCTCAACT TCCGCGGCCACCACCATTGGAGCAGCAGCGGCCGCCACCTTTTCGACCAC GGCAGCAACCTCCTCACCGGCCACCAATGCAACTACCAGCACCACACCAT CTCCGACCATGCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCT GCCTCCACATCCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGA AGGCCTGCGGATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCA AAGTCAAGGCTGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGAT GTCAATCCTCTTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAA GGTACCAATTGCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCA TCGTCGGCAAGATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCG AAAGAATTGGACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATG GGCGGATATGGAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACAT TTGGAGAATCATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTT TCGATGCTTGATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTG GGCAGCACAGGGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCG CTGCGCTGTTTGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAG CCGTTTTTGAGCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGC TTGCATTCGAGCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGA ACACGGGGATAGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCG TCGTCGTGTGTGCATGCGGAGTAA back to top
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