NO10G01180.1, NO10G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01180.1
Unique NameNO10G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1401
Alignment locationchr10:350382..351782 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:350382..351782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G01180.1 vs.
Match: EWM25410.1 (Glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 479.9 bits (1234), Expect = 7.600e-132
Identity = 261/407 (64.13%), Postives = 309/407 (75.92%), Query Frame = 0
Query:    2 LHRTVAASTVSRCP-LATTSPAAASAAASALMSPGCRRSSHSHHDGNNSHSKRRDYRGPLLVGGSLVGASTLQYYLHQRAFTSPVILGQGHAHAQLVASTSAATTIGAAAAATFSTTAATSSPATNATTSTTPSPTMHASSVASRPLSSSASTSAPTSYSSSANPLEGLRITLYQYKICPFCCKVKAVLDYYKIPYETMDVNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPAKELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHFSMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNKPFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGASSCVHAE 408
            L R +  S ++R   +A   P A++A+     + G RRS +S        SKRRDYRGPLLVGGSLVGAST+Q YLH RAF+SP +LG   A  QL+ S S+ T IGAAAAA  + ++ + + A+ A  ST P+    +++++         T    S  +S NPLEGLRITLYQYKICPFCCKVKAVLD+YK+PYET+DVNPLTKAEIKFS+DYRKVPIAR+G EVV DS +IV +I D+L AA VAP ++LD FF+P+A RWAEWAD ELAVLLFPNITR+FGES+QAFSYV +VPHFS LDKL+NQW+GATAMWAAQGKIKKKYNI DER ALF AL+ W+ EVG KPFL G+ PNVGDL VYACI AIEGLDA KDL+ANT I  WYTRVEHAIGASSCV AE
Sbjct:    3 LRRALGISHIARSHRVALVMPDASTASYFPACASG-RRSFYS--TSGRKQSKRRDYRGPLLVGGSLVGASTIQCYLHHRAFSSPTVLGPNQARNQLIVSASSVTAIGAAAAAALAFSSTSMAAASAAAPSTVPTALQASNAISP--------TQDLQSQPASLNPLEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWYTRVEHAIGASSCVRAE 398          
The following BLAST results are available for this feature:
BLAST of NO10G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25410.17.600e-13264.13Glutaredoxin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01180NO10G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01180.1NO10G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01180.1.cds1NO10G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01180.1 ID=NO10G01180.1|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ACAGCAATACAGTAAGTACTTCATCGCCGCGACCTGGGAGTCCGGACGAT
CCTTCGTCGGGTGCTGTTGCTGCTAGTCAGAAAAATTGTCATGTTGCATC
GGACTGTCGCCGCCTCTACCGTAAGCCGGTGCCCCCTGGCCACCACGTCC
CCTGCAGCTGCCTCCGCTGCGGCTTCTGCTCTGATGTCCCCCGGCTGCCG
GCGGTCGTCTCACAGCCACCACGACGGCAACAACTCGCACAGCAAACGTC
GAGATTATCGAGGCCCCTTGCTCGTTGGCGGCTCGTTAGTTGGGGCATCG
ACGCTCCAGTACTACCTCCACCAACGAGCGTTCACTAGTCCCGTGATTTT
GGGGCAAGGACATGCCCATGCGCAGCTCGTCGCCTCAACTTCCGCGGCCA
CCACCATTGGAGCAGCAGCGGCCGCCACCTTTTCGACCACGGCAGCAACC
TCCTCACCGGCCACCAATGCAACTACCAGCACCACACCATCTCCGACCAT
GCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCACAT
CCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGCGG
ATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAGGC
TGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCCTC
TTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAATT
GCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGCAA
GATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATTGG
ACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATATG
GAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAATC
ATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCTTG
ATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCACAG
GGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTGTT
TGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTTGA
GCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTCGA
GCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGGAT
AGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCGTCGTCGTGTG
TGCATGCGGAGTAAGATTGATAAAAGGACTGGGCGAGGTAGGCTGATGGG
ATTGGAAGAAAATGGCAGGGAAAGAAAAAAAAGAATGGGATGATTTTGCA
A
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protein sequence of NO10G01180.1

>NO10G01180.1-protein ID=NO10G01180.1-protein|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MLHRTVAASTVSRCPLATTSPAAASAAASALMSPGCRRSSHSHHDGNNSH
SKRRDYRGPLLVGGSLVGASTLQYYLHQRAFTSPVILGQGHAHAQLVAST
SAATTIGAAAAATFSTTAATSSPATNATTSTTPSPTMHASSVASRPLSSS
ASTSAPTSYSSSANPLEGLRITLYQYKICPFCCKVKAVLDYYKIPYETMD
VNPLTKAEIKFSADYRKVPIARIGDEVVIDSSIIVGKIMDLLRAAHVAPA
KELDAFFAPEATRWAEWADMELAVLLFPNITRTFGESYQAFSYVKDVPHF
SMLDKLTNQWIGATAMWAAQGKIKKKYNITDERAALFAALETWSSEVGNK
PFLSGSTPNVGDLCVYACIRAIEGLDAHKDLLANTGIGPWYTRVEHAIGA
SSCVHAE*
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mRNA from alignment at chr10:350382..351782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01180.1 ID=NO10G01180.1|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp|location=Sequence derived from alignment at chr10:350382..351782- (Nannochloropsis oceanica)
ACAGCAATACAGTAAGTACTTCATCGCCGCGACCTGGGAGTCCGGACGAT CCTTCGTCGGGTGCTGTTGCTGCTAGTCAGAAAAATTGTCATGTTGCATC GGACTGTCGCCGCCTCTACCGTAAGCCGGTGCCCCCTGGCCACCACGTCC CCTGCAGCTGCCTCCGCTGCGGCTTCTGCTCTGATGTCCCCCGGCTGCCG GCGGTCGTCTCACAGCCACCACGACGGCAACAACTCGCACAGCAAACGTC GAGATTATCGAGGCCCCTTGCTCGTTGGCGGCTCGTTAGTTGGGGCATCG ACGCTCCAGTACTACCTCCACCAACGAGCGTTCACTAGTCCCGTGATTTT GGGGCAAGGACATGCCCATGCGCAGCTCGTCGCCTCAACTTCCGCGGCCA CCACCATTGGAGCAGCAGCGGCCGCCACCTTTTCGACCACGGCAGCAACC TCCTCACCGGCCACCAATGCAACTACCAGCACCACACCATCTCCGACCAT GCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCTGCCTCCACAT CCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGAAGGCCTGCGG ATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCAAAGTCAAGGC TGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGATGTCAATCCTC TTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAAGGTACCAATT GCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCATCGTCGGCAA GATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCGAAAGAATTGG ACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATGGGCGGATATG GAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACATTTGGAGAATC ATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTTTCGATGCTTG ATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTGGGCAGCACAG GGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCGCTGCGCTGTT TGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAGCCGTTTTTGA GCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGCTTGCATTCGA GCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGAACACGGGGAT AGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCGTCGTCGTGTG TGCATGCGGAGTAAGATTGATAAAAGGACTGGGCGAGGTAGGCTGATGGG ATTGGAAGAAAATGGCAGGGAAAGAAAAAAAAGAATGGGATGATTTTGCA A
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Coding sequence (CDS) from alignment at chr10:350382..351782-

>NO10G01180.1 ID=NO10G01180.1|Name=NO10G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr10:350382..351782- (Nannochloropsis oceanica)
ATGTTGCATCGGACTGTCGCCGCCTCTACCGTAAGCCGGTGCCCCCTGGC
CACCACGTCCCCTGCAGCTGCCTCCGCTGCGGCTTCTGCTCTGATGTCCC
CCGGCTGCCGGCGGTCGTCTCACAGCCACCACGACGGCAACAACTCGCAC
AGCAAACGTCGAGATTATCGAGGCCCCTTGCTCGTTGGCGGCTCGTTAGT
TGGGGCATCGACGCTCCAGTACTACCTCCACCAACGAGCGTTCACTAGTC
CCGTGATTTTGGGGCAAGGACATGCCCATGCGCAGCTCGTCGCCTCAACT
TCCGCGGCCACCACCATTGGAGCAGCAGCGGCCGCCACCTTTTCGACCAC
GGCAGCAACCTCCTCACCGGCCACCAATGCAACTACCAGCACCACACCAT
CTCCGACCATGCATGCGTCCTCGGTGGCATCTCGCCCCTTGTCCTCCTCT
GCCTCCACATCCGCCCCGACGAGCTACAGCAGCAGCGCAAACCCTTTAGA
AGGCCTGCGGATCACCCTCTATCAATACAAAATATGCCCCTTCTGCTGCA
AAGTCAAGGCTGTCCTGGACTACTACAAAATCCCCTACGAGACCATGGAT
GTCAATCCTCTTACCAAAGCCGAAATAAAGTTCTCCGCTGACTACCGCAA
GGTACCAATTGCCCGGATAGGGGATGAGGTGGTCATTGATTCCTCCATCA
TCGTCGGCAAGATTATGGATTTGCTCCGCGCGGCCCACGTGGCCCCTGCG
AAAGAATTGGACGCGTTTTTCGCACCTGAGGCGACGCGATGGGCCGAATG
GGCGGATATGGAGTTAGCAGTATTGTTGTTTCCTAATATAACCCGGACAT
TTGGAGAATCATACCAGGCGTTTAGTTACGTGAAGGATGTGCCTCATTTT
TCGATGCTTGATAAACTAACTAATCAATGGATAGGTGCCACGGCTATGTG
GGCAGCACAGGGGAAGATAAAGAAAAAGTACAACATCACGGATGAACGCG
CTGCGCTGTTTGCGGCGTTGGAGACCTGGAGTAGCGAGGTGGGGAACAAG
CCGTTTTTGAGCGGGAGTACTCCCAATGTGGGGGATTTGTGTGTGTATGC
TTGCATTCGAGCTATTGAGGGGTTGGATGCCCATAAGGATTTGCTGGCGA
ACACGGGGATAGGACCCTGGTATACACGGGTGGAGCATGCGATAGGGGCG
TCGTCGTGTGTGCATGCGGAGTAA
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Synonyms
Publications