NO10G01000.1, NO10G01000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G01000.1
Unique NameNO10G01000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length897
Alignment locationchr10:309150..310046 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:309150..310046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G01000.1 vs.
Match: XP_005853775.1 (enyol-CoA hydratase [Nannochloropsis gaditana CCMP526]; XP_005854592.1 enyol-CoA hydratase [Nannochloropsis gaditana CCMP526]; EKU21773.1 enyol-CoA hydratase [Nannochloropsis gaditana CCMP526]; EKU22585.1 enyol-CoA hydratase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 448.0 bits (1151), Expect = 2.300e-122
Identity = 228/266 (85.71%), Postives = 244/266 (91.73%), Query Frame = 0 
Query:   32 MTAGACGTWEKSYEFILAERRDKVALLTLNRPKALNALCNGIIQDLIEATTHIVRDDSVGCIVLTGSTKAFAAGADIKEMKDKTFVEAFSTNMFEEWGHIARVAKPIVAAVNGYALGGGCELMMMADIVVAGENAKFGQPEISLGVIPGCGGTQRLVRAIGKSKAMELVLTGGMIDAKQAEKDGLVSKVVPTDTTVQVALDMAKTIASFSLPVTAAAKETVNSAFELNLAEGLRFERRVFHSLFALQDQKEGMRAFVEKRKPKFTN 298
            M+    G WEK Y+FILAE++ KVALLTLNRPKALNALCNGIIQDLI+ATT I  DD+VG IVLTGSTKAFAAGADIKEMKDK+FV+AFS+NMF EWGHIARV KPIVAAVNGYALGGGCELMMMADIV+AGENAKFGQPEI+LGVIPGCGGTQRLVRAIGKSKAMELVLTGGMIDA QAE+DGLVSKVVP + TV VAL+MA  IASFSLPV AAAKETVN+AFELNLAEGLRFERR+FHSLFALQDQKEGM AFVEKRKP FTN
Sbjct:    1 MSTAPAGKWEKEYDFILAEKKGKVALLTLNRPKALNALCNGIIQDLIDATTAIAADDTVGAIVLTGSTKAFAAGADIKEMKDKSFVQAFSSNMFAEWGHIARVTKPIVAAVNGYALGGGCELMMMADIVIAGENAKFGQPEITLGVIPGCGGTQRLVRAIGKSKAMELVLTGGMIDALQAERDGLVSKVVPAEKTVDVALEMATKIASFSLPVAAAAKETVNAAFELNLAEGLRFERRIFHSLFALQDQKEGMAAFVEKRKPTFTN 266
The following BLAST results are available for this feature:
BLAST of NO10G01000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853775.12.300e-12285.71enyol-CoA hydratase [Nannochloropsis gaditana CCMP... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G01000NO10G01000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G01000.1NO10G01000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G01000.1.cds1NO10G01000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G01000.1 ID=NO10G01000.1|Name=NO10G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp
ATGCTGGCCCGCTCCACCCTCCTGCGACGCTCCTCCCTGCTCCTTCGACC
CCTCCCCTTGTCCTCCATCACAAGCACCACTGTCGCCCGTTCTATGACAG
CAGGTGCCTGCGGGACCTGGGAAAAATCGTATGAATTCATTCTTGCGGAA
CGAAGGGACAAGGTCGCCCTCCTGACGTTGAATCGTCCCAAGGCCCTGAA
TGCCCTGTGCAATGGCATCATCCAGGACTTGATCGAGGCAACCACGCATA
TCGTGCGCGACGACAGCGTGGGCTGTATCGTCCTTACTGGCTCCACGAAA
GCATTTGCTGCCGGTGCGGACATCAAGGAGATGAAGGATAAAACCTTCGT
TGAGGCTTTTAGCACCAACATGTTTGAAGAGTGGGGACACATCGCACGAG
TGGCCAAGCCGATCGTGGCAGCCGTGAATGGGTATGCACTTGGAGGAGGA
TGCGAGCTGATGATGATGGCTGATATTGTCGTCGCCGGGGAAAATGCCAA
ATTCGGCCAGCCGGAGATATCCCTGGGTGTGATCCCTGGTTGTGGGGGGA
CACAGAGGTTGGTGCGTGCCATTGGGAAGAGCAAGGCGATGGAACTCGTC
TTGACGGGGGGAATGATCGACGCGAAGCAGGCGGAGAAGGACGGTTTGGT
GTCCAAGGTGGTCCCCACGGACACAACTGTTCAAGTGGCTCTTGACATGG
CGAAGACCATCGCCTCGTTTTCACTACCTGTGACCGCGGCCGCCAAGGAA
ACCGTTAACTCGGCCTTTGAATTAAACCTCGCGGAGGGCTTAAGGTTTGA
GAGGAGGGTTTTTCATAGTCTGTTTGCATTGCAGGACCAGAAAGAGGGGA
TGAGGGCGTTCGTGGAGAAGAGGAAGCCCAAGTTTACTAATGCATAG
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protein sequence of NO10G01000.1

>NO10G01000.1-protein ID=NO10G01000.1-protein|Name=NO10G01000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MLARSTLLRRSSLLLRPLPLSSITSTTVARSMTAGACGTWEKSYEFILAE
RRDKVALLTLNRPKALNALCNGIIQDLIEATTHIVRDDSVGCIVLTGSTK
AFAAGADIKEMKDKTFVEAFSTNMFEEWGHIARVAKPIVAAVNGYALGGG
CELMMMADIVVAGENAKFGQPEISLGVIPGCGGTQRLVRAIGKSKAMELV
LTGGMIDAKQAEKDGLVSKVVPTDTTVQVALDMAKTIASFSLPVTAAAKE
TVNSAFELNLAEGLRFERRVFHSLFALQDQKEGMRAFVEKRKPKFTNA*
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mRNA from alignment at chr10:309150..310046+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G01000.1 ID=NO10G01000.1|Name=NO10G01000.1|organism=Nannochloropsis oceanica|type=mRNA|length=897bp|location=Sequence derived from alignment at chr10:309150..310046+ (Nannochloropsis oceanica)
ATGCTGGCCCGCTCCACCCTCCTGCGACGCTCCTCCCTGCTCCTTCGACC
CCTCCCCTTGTCCTCCATCACAAGCACCACTGTCGCCCGTTCTATGACAG
CAGGTGCCTGCGGGACCTGGGAAAAATCGTATGAATTCATTCTTGCGGAA
CGAAGGGACAAGGTCGCCCTCCTGACGTTGAATCGTCCCAAGGCCCTGAA
TGCCCTGTGCAATGGCATCATCCAGGACTTGATCGAGGCAACCACGCATA
TCGTGCGCGACGACAGCGTGGGCTGTATCGTCCTTACTGGCTCCACGAAA
GCATTTGCTGCCGGTGCGGACATCAAGGAGATGAAGGATAAAACCTTCGT
TGAGGCTTTTAGCACCAACATGTTTGAAGAGTGGGGACACATCGCACGAG
TGGCCAAGCCGATCGTGGCAGCCGTGAATGGGTATGCACTTGGAGGAGGA
TGCGAGCTGATGATGATGGCTGATATTGTCGTCGCCGGGGAAAATGCCAA
ATTCGGCCAGCCGGAGATATCCCTGGGTGTGATCCCTGGTTGTGGGGGGA
CACAGAGGTTGGTGCGTGCCATTGGGAAGAGCAAGGCGATGGAACTCGTC
TTGACGGGGGGAATGATCGACGCGAAGCAGGCGGAGAAGGACGGTTTGGT
GTCCAAGGTGGTCCCCACGGACACAACTGTTCAAGTGGCTCTTGACATGG
CGAAGACCATCGCCTCGTTTTCACTACCTGTGACCGCGGCCGCCAAGGAA
ACCGTTAACTCGGCCTTTGAATTAAACCTCGCGGAGGGCTTAAGGTTTGA
GAGGAGGGTTTTTCATAGTCTGTTTGCATTGCAGGACCAGAAAGAGGGGA
TGAGGGCGTTCGTGGAGAAGAGGAAGCCCAAGTTTACTAATGCATAG
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Coding sequence (CDS) from alignment at chr10:309150..310046+

>NO10G01000.1 ID=NO10G01000.1|Name=NO10G01000.1|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at chr10:309150..310046+ (Nannochloropsis oceanica)
ATGCTGGCCCGCTCCACCCTCCTGCGACGCTCCTCCCTGCTCCTTCGACC
CCTCCCCTTGTCCTCCATCACAAGCACCACTGTCGCCCGTTCTATGACAG
CAGGTGCCTGCGGGACCTGGGAAAAATCGTATGAATTCATTCTTGCGGAA
CGAAGGGACAAGGTCGCCCTCCTGACGTTGAATCGTCCCAAGGCCCTGAA
TGCCCTGTGCAATGGCATCATCCAGGACTTGATCGAGGCAACCACGCATA
TCGTGCGCGACGACAGCGTGGGCTGTATCGTCCTTACTGGCTCCACGAAA
GCATTTGCTGCCGGTGCGGACATCAAGGAGATGAAGGATAAAACCTTCGT
TGAGGCTTTTAGCACCAACATGTTTGAAGAGTGGGGACACATCGCACGAG
TGGCCAAGCCGATCGTGGCAGCCGTGAATGGGTATGCACTTGGAGGAGGA
TGCGAGCTGATGATGATGGCTGATATTGTCGTCGCCGGGGAAAATGCCAA
ATTCGGCCAGCCGGAGATATCCCTGGGTGTGATCCCTGGTTGTGGGGGGA
CACAGAGGTTGGTGCGTGCCATTGGGAAGAGCAAGGCGATGGAACTCGTC
TTGACGGGGGGAATGATCGACGCGAAGCAGGCGGAGAAGGACGGTTTGGT
GTCCAAGGTGGTCCCCACGGACACAACTGTTCAAGTGGCTCTTGACATGG
CGAAGACCATCGCCTCGTTTTCACTACCTGTGACCGCGGCCGCCAAGGAA
ACCGTTAACTCGGCCTTTGAATTAAACCTCGCGGAGGGCTTAAGGTTTGA
GAGGAGGGTTTTTCATAGTCTGTTTGCATTGCAGGACCAGAAAGAGGGGA
TGAGGGCGTTCGTGGAGAAGAGGAAGCCCAAGTTTACTAATGCATAG
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Synonyms
Publications