NO10G00990.1, NO10G00990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00990.1
Unique NameNO10G00990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1602
Alignment locationchr10:306992..308593 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:306992..308593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00990.1 vs.
Match: EWM25337.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 270.4 bits (690), Expect = 1.200e-68
Identity = 206/500 (41.20%), Postives = 283/500 (56.60%), Query Frame = 0 
Query:   73 QHQQHQYHHYPQYQQQQHWEQQQQQQQQQQQQQQQQQQQSYDGGCTQHHPGMLNTSHPPPLPP--------PLPPPSPPF-DPALIDAMQYEVDFLFSLEHLAQDYIIAKHMRSGSIPVTKFLGLPRMKSLLASFNLTSNGGGPERSLLAEAVGRSKVVVLREHEKKIGRRDYSTGGDLAWRCVVITHLPQDSTEASVKELVDKYGEVARIAVGEEGEDGNEGGR----EGMRAIVQFVAPGGALKCADALGGTKANWRVSHKVAYLNGYSVAQMTQVLGL---------------------AGKGGEGGESSGISGGSDVVSSSSLPKEKVS-----LALPPVIPEGEHTGIVWEVDGGGVGTG-RGVLKREGQRRTIISFDLPVSLTLAVGDRVAFSVKHVENKAVVQNITMAPPLSSLLSSSSVSSSSSSMTSSSSSSPSTAARGAGRNNAP--KNGNTMAKGPDTSIGFKMPRTKPPFELTELLEGLKVGVGGEKE 531
            Q Q      Y Q+  Q H++  Q   ++ +Q+   +  Q +     QH P         P P          LP     F DPAL+D++++ ++ LFSLE+L  +Y IAKHMRSGSIPVTK L LP+++ +L +   T    G ER LLA+AV  S  V   E+ KKIGR D+S+GGDLA+RCV I  LP+ STEASV+ LVD++GEV  + +G   E+G E       +G +A+V+F AP GAL+C D L GTK+NWR S +V +LNG+S  Q+  + GL                      G GG    +SGI G      +S+      S       LPPV+PEG+HTG + E++    G G RGVLKREGQRRT++SF    +  LAVG+RVAFSVKH+++KAVVQN+ +APPL            S+ +++ +S + + AAR  G    P  +NG  MA+GP  S GF  PRT+P  E+ ELL+ LK+    +KE
Sbjct:   49 QGQNQLQSDYNQFSNQHHYQFHQSDGERGEQRLNFRYAQQFQPHPLQHTPSTFVDDCHDPSPAFNRSVVCSSLPVNDSSFWDPALVDSLRHAIEALFSLENLKTNYTIAKHMRSGSIPVTKLLSLPQIRQVLENVGGTC---GQERLLLAQAVAHSNSVATCENGKKIGRVDHSSGGDLAFRCVEIRSLPEGSTEASVRALVDRFGEVTHVKLGGMDEEGKEKDEKPPCQGEQALVEFAAPAGALQCVDTLSGTKSNWRSSVRVTFLNGFSTGQVATMAGLEILHAAQEGGATTLKGPQKESTGSGGSCSATSGIPGPVPTTRTSTGTGGPASTLAGACLLPPVLPEGDHTGHIVELEVDAAGRGVRGVLKREGQRRTLVSFQYSDAAPLAVGERVAFSVKHIDSKAVVQNLVVAPPL-----------PSTPLSTLNSGARTGAARPLGGRVIPTTRNGGIMARGPSGSHGFHFPRTRPSGEVLELLDALKLNGAQQKE 534
The following BLAST results are available for this feature:
BLAST of NO10G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25337.11.200e-6841.20Winged helix-turn-helix transcription repressor [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00990NO10G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00990.1NO10G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00990.1.cds1NO10G00990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00990.1 ID=NO10G00990.1|Name=NO10G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp
ATGAACGGTCGGAATCAGCCTCGGGGAATGAGTGGAGCTTCCCAGCAGTA
TGTCCCTTCGTCGGCGGTGCCCATGCCGCCTTCGCAAGGGCCGTACGCCC
AGTATTACCCACAACATCAGCAGCAGCAATATCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGGTTTCTCGCACCGCCACCACTACCAGCGCCA
GGGCTACCCTCATCCGCAGCACCAGCAGCATCAGTACCACCATTACCCGC
AATACCAGCAGCAGCAGCACTGGGAACAGCAGCAGCAACAACAACAACAA
CAACAACAACAGCAGCAGCAACAGCAGCAACAGTCGTACGATGGTGGTTG
TACCCAACACCATCCCGGCATGCTGAACACAAGCCATCCTCCACCCCTTC
CTCCTCCTCTTCCTCCTCCTTCTCCTCCCTTCGACCCCGCCCTCATCGAC
GCGATGCAATACGAAGTGGACTTTCTATTTTCCCTCGAACATTTAGCACA
AGACTATATCATTGCGAAACACATGCGCAGCGGCTCCATCCCCGTCACCA
AGTTCCTAGGTCTCCCACGAATGAAGAGCTTGCTTGCCTCCTTCAATCTC
ACAAGCAACGGAGGGGGTCCTGAGCGATCGCTTCTCGCCGAAGCCGTGGG
ACGGTCAAAAGTGGTGGTGTTAAGAGAGCATGAGAAAAAAATAGGGAGGA
GGGATTATTCCACAGGAGGCGACTTGGCGTGGCGGTGTGTAGTGATCACA
CATCTCCCCCAGGACAGCACCGAGGCGAGCGTGAAGGAGCTGGTGGATAA
ATACGGAGAGGTGGCAAGAATCGCGGTGGGAGAAGAGGGTGAGGATGGGA
ATGAGGGAGGGAGGGAAGGAATGAGGGCGATAGTGCAGTTTGTGGCGCCG
GGAGGGGCCTTAAAATGTGCGGATGCCCTAGGAGGCACGAAGGCCAATTG
GCGCGTGTCTCATAAAGTGGCTTATTTGAATGGGTACAGCGTTGCGCAGA
TGACGCAGGTCCTGGGGTTGGCGGGAAAAGGAGGAGAAGGAGGAGAATCT
TCTGGAATTTCGGGTGGGAGTGATGTCGTTTCGTCCTCGTCGTTGCCGAA
GGAAAAGGTGTCTTTGGCATTACCCCCAGTCATTCCCGAGGGGGAGCACA
CAGGCATTGTGTGGGAGGTGGACGGAGGAGGGGTAGGAACAGGGAGGGGG
GTGTTGAAGAGGGAAGGGCAACGACGGACGATTATTTCCTTCGACCTTCC
CGTAAGCTTGACCCTGGCCGTGGGGGATCGGGTGGCGTTCTCTGTGAAGC
ACGTCGAGAATAAGGCGGTCGTGCAGAATATTACCATGGCACCACCCCTA
TCCTCCCTCCTTTCCTCCTCCTCGGTATCCTCCTCCTCTTCTTCCATGAC
CTCGTCTTCGTCGTCCTCGCCGTCGACAGCTGCACGGGGCGCAGGGAGGA
ATAACGCTCCGAAGAATGGGAACACCATGGCTAAAGGCCCCGACACTTCG
ATAGGTTTCAAGATGCCACGGACCAAGCCGCCTTTTGAGCTGACAGAATT
GCTGGAGGGTTTAAAAGTGGGAGTTGGAGGGGAGAAGGAGGGCCAAAAGT
GA
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protein sequence of NO10G00990.1

>NO10G00990.1-protein ID=NO10G00990.1-protein|Name=NO10G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MNGRNQPRGMSGASQQYVPSSAVPMPPSQGPYAQYYPQHQQQQYQQQQQQ
QQQQQQGFSHRHHYQRQGYPHPQHQQHQYHHYPQYQQQQHWEQQQQQQQQ
QQQQQQQQQQQSYDGGCTQHHPGMLNTSHPPPLPPPLPPPSPPFDPALID
AMQYEVDFLFSLEHLAQDYIIAKHMRSGSIPVTKFLGLPRMKSLLASFNL
TSNGGGPERSLLAEAVGRSKVVVLREHEKKIGRRDYSTGGDLAWRCVVIT
HLPQDSTEASVKELVDKYGEVARIAVGEEGEDGNEGGREGMRAIVQFVAP
GGALKCADALGGTKANWRVSHKVAYLNGYSVAQMTQVLGLAGKGGEGGES
SGISGGSDVVSSSSLPKEKVSLALPPVIPEGEHTGIVWEVDGGGVGTGRG
VLKREGQRRTIISFDLPVSLTLAVGDRVAFSVKHVENKAVVQNITMAPPL
SSLLSSSSVSSSSSSMTSSSSSSPSTAARGAGRNNAPKNGNTMAKGPDTS
IGFKMPRTKPPFELTELLEGLKVGVGGEKEGQK*
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mRNA from alignment at chr10:306992..308593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00990.1 ID=NO10G00990.1|Name=NO10G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1602bp|location=Sequence derived from alignment at chr10:306992..308593- (Nannochloropsis oceanica)
ATGAACGGTCGGAATCAGCCTCGGGGAATGAGTGGAGCTTCCCAGCAGTA
TGTCCCTTCGTCGGCGGTGCCCATGCCGCCTTCGCAAGGGCCGTACGCCC
AGTATTACCCACAACATCAGCAGCAGCAATATCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGGTTTCTCGCACCGCCACCACTACCAGCGCCA
GGGCTACCCTCATCCGCAGCACCAGCAGCATCAGTACCACCATTACCCGC
AATACCAGCAGCAGCAGCACTGGGAACAGCAGCAGCAACAACAACAACAA
CAACAACAACAGCAGCAGCAACAGCAGCAACAGTCGTACGATGGTGGTTG
TACCCAACACCATCCCGGCATGCTGAACACAAGCCATCCTCCACCCCTTC
CTCCTCCTCTTCCTCCTCCTTCTCCTCCCTTCGACCCCGCCCTCATCGAC
GCGATGCAATACGAAGTGGACTTTCTATTTTCCCTCGAACATTTAGCACA
AGACTATATCATTGCGAAACACATGCGCAGCGGCTCCATCCCCGTCACCA
AGTTCCTAGGTCTCCCACGAATGAAGAGCTTGCTTGCCTCCTTCAATCTC
ACAAGCAACGGAGGGGGTCCTGAGCGATCGCTTCTCGCCGAAGCCGTGGG
ACGGTCAAAAGTGGTGGTGTTAAGAGAGCATGAGAAAAAAATAGGGAGGA
GGGATTATTCCACAGGAGGCGACTTGGCGTGGCGGTGTGTAGTGATCACA
CATCTCCCCCAGGACAGCACCGAGGCGAGCGTGAAGGAGCTGGTGGATAA
ATACGGAGAGGTGGCAAGAATCGCGGTGGGAGAAGAGGGTGAGGATGGGA
ATGAGGGAGGGAGGGAAGGAATGAGGGCGATAGTGCAGTTTGTGGCGCCG
GGAGGGGCCTTAAAATGTGCGGATGCCCTAGGAGGCACGAAGGCCAATTG
GCGCGTGTCTCATAAAGTGGCTTATTTGAATGGGTACAGCGTTGCGCAGA
TGACGCAGGTCCTGGGGTTGGCGGGAAAAGGAGGAGAAGGAGGAGAATCT
TCTGGAATTTCGGGTGGGAGTGATGTCGTTTCGTCCTCGTCGTTGCCGAA
GGAAAAGGTGTCTTTGGCATTACCCCCAGTCATTCCCGAGGGGGAGCACA
CAGGCATTGTGTGGGAGGTGGACGGAGGAGGGGTAGGAACAGGGAGGGGG
GTGTTGAAGAGGGAAGGGCAACGACGGACGATTATTTCCTTCGACCTTCC
CGTAAGCTTGACCCTGGCCGTGGGGGATCGGGTGGCGTTCTCTGTGAAGC
ACGTCGAGAATAAGGCGGTCGTGCAGAATATTACCATGGCACCACCCCTA
TCCTCCCTCCTTTCCTCCTCCTCGGTATCCTCCTCCTCTTCTTCCATGAC
CTCGTCTTCGTCGTCCTCGCCGTCGACAGCTGCACGGGGCGCAGGGAGGA
ATAACGCTCCGAAGAATGGGAACACCATGGCTAAAGGCCCCGACACTTCG
ATAGGTTTCAAGATGCCACGGACCAAGCCGCCTTTTGAGCTGACAGAATT
GCTGGAGGGTTTAAAAGTGGGAGTTGGAGGGGAGAAGGAGGGCCAAAAGT
GA
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Coding sequence (CDS) from alignment at chr10:306992..308593-

>NO10G00990.1 ID=NO10G00990.1|Name=NO10G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at chr10:306992..308593- (Nannochloropsis oceanica)
ATGAACGGTCGGAATCAGCCTCGGGGAATGAGTGGAGCTTCCCAGCAGTA
TGTCCCTTCGTCGGCGGTGCCCATGCCGCCTTCGCAAGGGCCGTACGCCC
AGTATTACCCACAACATCAGCAGCAGCAATATCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGGTTTCTCGCACCGCCACCACTACCAGCGCCA
GGGCTACCCTCATCCGCAGCACCAGCAGCATCAGTACCACCATTACCCGC
AATACCAGCAGCAGCAGCACTGGGAACAGCAGCAGCAACAACAACAACAA
CAACAACAACAGCAGCAGCAACAGCAGCAACAGTCGTACGATGGTGGTTG
TACCCAACACCATCCCGGCATGCTGAACACAAGCCATCCTCCACCCCTTC
CTCCTCCTCTTCCTCCTCCTTCTCCTCCCTTCGACCCCGCCCTCATCGAC
GCGATGCAATACGAAGTGGACTTTCTATTTTCCCTCGAACATTTAGCACA
AGACTATATCATTGCGAAACACATGCGCAGCGGCTCCATCCCCGTCACCA
AGTTCCTAGGTCTCCCACGAATGAAGAGCTTGCTTGCCTCCTTCAATCTC
ACAAGCAACGGAGGGGGTCCTGAGCGATCGCTTCTCGCCGAAGCCGTGGG
ACGGTCAAAAGTGGTGGTGTTAAGAGAGCATGAGAAAAAAATAGGGAGGA
GGGATTATTCCACAGGAGGCGACTTGGCGTGGCGGTGTGTAGTGATCACA
CATCTCCCCCAGGACAGCACCGAGGCGAGCGTGAAGGAGCTGGTGGATAA
ATACGGAGAGGTGGCAAGAATCGCGGTGGGAGAAGAGGGTGAGGATGGGA
ATGAGGGAGGGAGGGAAGGAATGAGGGCGATAGTGCAGTTTGTGGCGCCG
GGAGGGGCCTTAAAATGTGCGGATGCCCTAGGAGGCACGAAGGCCAATTG
GCGCGTGTCTCATAAAGTGGCTTATTTGAATGGGTACAGCGTTGCGCAGA
TGACGCAGGTCCTGGGGTTGGCGGGAAAAGGAGGAGAAGGAGGAGAATCT
TCTGGAATTTCGGGTGGGAGTGATGTCGTTTCGTCCTCGTCGTTGCCGAA
GGAAAAGGTGTCTTTGGCATTACCCCCAGTCATTCCCGAGGGGGAGCACA
CAGGCATTGTGTGGGAGGTGGACGGAGGAGGGGTAGGAACAGGGAGGGGG
GTGTTGAAGAGGGAAGGGCAACGACGGACGATTATTTCCTTCGACCTTCC
CGTAAGCTTGACCCTGGCCGTGGGGGATCGGGTGGCGTTCTCTGTGAAGC
ACGTCGAGAATAAGGCGGTCGTGCAGAATATTACCATGGCACCACCCCTA
TCCTCCCTCCTTTCCTCCTCCTCGGTATCCTCCTCCTCTTCTTCCATGAC
CTCGTCTTCGTCGTCCTCGCCGTCGACAGCTGCACGGGGCGCAGGGAGGA
ATAACGCTCCGAAGAATGGGAACACCATGGCTAAAGGCCCCGACACTTCG
ATAGGTTTCAAGATGCCACGGACCAAGCCGCCTTTTGAGCTGACAGAATT
GCTGGAGGGTTTAAAAGTGGGAGTTGGAGGGGAGAAGGAGGGCCAAAAGT
GA
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Synonyms
Publications