NO10G00970.1, NO10G00970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00970.1
Unique NameNO10G00970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1296
Alignment locationchr10:300995..303232 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:300995..303232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00970.1 vs.
Match: XP_005854594.1 (hypothetical protein NGA_0176300 [Nannochloropsis gaditana CCMP526]; EKU21775.1 hypothetical protein NGA_0176300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 108.2 bits (269), Expect = 6.400e-20
Identity = 71/144 (49.31%), Postives = 85/144 (59.03%), Query Frame = 0 
Query:   62 RRNLAQHLLKKRPLLMGGGGGAGGDSGLLHNSHSFHSSAPSLGGGTPGEWNHVWNWKIKKRLATMEEEGNKLKNQNQGGSSSSSSGNGGEGFGPLPGEKVIALDENLPDGALEAYWAELRREREVQRGG------GGEGGGKRR 200
            R  LA +L KKRPL+    G    ++  +  ++ FHSSA  LGGGTP +WNHVWNWK+K+RLA M+E   K +       S   S      F PLPGE+VI LDENLPDG LE YWAELRRERE    G       G G  KR+
Sbjct:   20 RHGLA-NLRKKRPLIPKVDGVM--NTLPVSQNYGFHSSASVLGGGTPTKWNHVWNWKMKQRLAAMKEADEKPQ------QSEEKSHEKDNMFRPLPGERVIELDENLPDGVLEEYWAELRREREGSHEGTDGKQTSGRGQSKRK 154
The following BLAST results are available for this feature:
BLAST of NO10G00970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854594.16.400e-2049.31hypothetical protein NGA_0176300 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00970NO10G00970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00970.1NO10G00970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00970.1.cds1NO10G00970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00970.1.cds2NO10G00970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00970.1.cds3NO10G00970.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00970.1.cds4NO10G00970.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00970.1.cds5NO10G00970.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00970.1 ID=NO10G00970.1|Name=NO10G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1296bp
ATGAGCGCCGGCGTCCGTCGCCGACATCATCTCCCGGTCACGTTACCGCA
CTCTGTCTCTCAAGCACAAAGCAGCAAATGGCAAGTGCCCTCCGAGCCCA
ACCGCACCCTGGAGATCATACACATGCCGCAGGGGGACCTAGTCATGCAT
GCCCTCACGTCTACGATACCTGCCTTGGGTGTTAGAAGGAACCTGGCGCA
GCATTTGCTCAAGAAGCGTCCACTGCTGATGGGAGGAGGCGGAGGAGCAG
GTGGAGACTCAGGACTCCTGCATAACTCTCATAGCTTTCACAGCTCGGCG
CCTTCGCTGGGAGGCGGCACACCGGGGGAATGGAATCACGTCTGGAACTG
GAAGATCAAGAAACGCCTGGCCACCATGGAGGAAGAAGGGAACAAACTGA
AAAACCAAAATCAAGGCGGCAGCAGCAGCAGCAGCAGCGGTAACGGCGGC
GAAGGTTTTGGACCGTTGCCGGGAGAGAAGGTGATTGCCTTGGATGAGAA
TCTCCCGGACGGGGCTCTTGAAGCCTACTGGGCGGAGTTAAGGAGGGAGA
GGGAGGTCCAACGAGGAGGTGGAGGGGAAGGGGGGGGGAAGAGAAGGAGA
AGAGCGGGAAGGCGAAGCGGAGTACGATCAAGAGACACCTATTGTTCGGA
TGGAATTATGCACCCAAGAAGAACAAAGGAGGAGCAGGATCAGGAGAAGA
AAAAGCAGCGGCAGGAGGAAAGAGAGGCGCCCTATTTCCGACCAAGGCTC
CAGCACCAGGACCAGCAGCAACAGCAGCAGCAATGGCAAGCACTGCGGGG
AAATAGAAATGATGCCGGAGGGAAGGAAGGGCGGGGATCATTCGATCTGT
GGGGGGCTCGGACGGAGGCGGAGGAGGAGGAGGGGGCGGAGGCGGTGGAA
GCAGAGGAGAAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAGGAGGACGA
GGACGAGGCAGAGGAGGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCG
AGGACTTTGTTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGACGGCA
ATGGGGCACGTAACATCCTACAGGTGTACAGGAGTATGGTCCGTGGGAAG
GTTCGTCCCCATGATCTTCGGTTTGGTCAACCGCGGCAAGATATGCGGGC
ACTCTATGTGTAGCATTCCCGCTGACCTCCTCTTTTATCCTCCTCCCCCT
TCTCCTCCTTGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCGAAAA
ACCTGTCAAGGTCGCTAGTAAAACTCGGACCAAAAATAAGGGATGA
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protein sequence of NO10G00970.1

>NO10G00970.1-protein ID=NO10G00970.1-protein|Name=NO10G00970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSAGVRRRHHLPVTLPHSVSQAQSSKWQVPSEPNRTLEIIHMPQGDLVMH
ALTSTIPALGVRRNLAQHLLKKRPLLMGGGGGAGGDSGLLHNSHSFHSSA
PSLGGGTPGEWNHVWNWKIKKRLATMEEEGNKLKNQNQGGSSSSSSGNGG
EGFGPLPGEKVIALDENLPDGALEAYWAELRREREVQRGGGGEGGGKRRR
RAGRRSGVRSRDTYCSDGIMHPRRTKEEQDQEKKKQRQEEREAPYFRPRL
QHQDQQQQQQQWQALRGNRNDAGGKEGRGSFDLWGARTEAEEEEGAEAVE
AEEKEAEAEEAEAEEDEDEAEEEAEEEVMGGPSEDFVGVTPVNSSCLGTA
MGHVTSYRCTGVWSVGRFVPMIFGLVNRGKICGHSMCSIPADLLFYPPPP
SPPCPVWAVRGLCLIEKPVKVASKTRTKNKG*
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mRNA from alignment at chr10:300995..303232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00970.1 ID=NO10G00970.1|Name=NO10G00970.1|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp|location=Sequence derived from alignment at chr10:300995..303232+ (Nannochloropsis oceanica)
ATGAGCGCCGGCGTCCGTCGCCGACATCATCTCCCGGTCACGTTACCGCA
CTCTGTCTCTCAAGCACAAAGCAGCAAATGGCAAGTGCCCTCCGAGCCCA
ACCGCACCCTGGAGATCATACACATGCCGCAGGTGTGCCAGGCTGGTTGA
TTGTTTTAACTGCGACGGCATCCATTTTCATCATATCAGAGGACCTGCCA
AAATCCAGCAGTAGCATCGTCATGTCCCATGCTTTCACCCATGTGACACA
CGTCACCTATCAAACACAGGGGGACCTAGTCATGCATGCCCTCACGTCTA
CGATACCTGCCTTGGGTGTTAGAAGGAACCTGGCGCAGCATTTGCTCAAG
AAGCGTCCACTGCTGATGGGAGGAGGCGGAGGAGCAGGTGGAGACTCAGG
ACTCCTGCATAACTCTCATAGCTTTCACAGCTCGGCGCCTTCGCTGGGAG
GCGGCACACCGGGGGAATGGAATCACGGTGAGTGTTCATTTTAAGATGAG
ATGTGGGTGATTTGTAGGTGCAGATTGGGAGGTGCGTTGGATAGAAGAGG
AAAGGAGAGAAAAGCGGAGTAAAGGAGGAGGCATCGGCGTTCCAGGAGGC
GTTTTTAGGATTTTGATAAATCAGCGGAATCCATTCATTGCCCCCCTGTG
TCTTTTCCCATATTTCCTTTCTCTGCATGTGTCTAAAGAATGAGATCAAG
CAGCGCCTGAATACCATGAAGGAAGGCGGGGAGAGAGCATGGCAATATTA
GCAATAGCAATCCCACATTATCCACATTTGCTCATCTTTTCCTTCCCCCT
CCCTCTGTGCTTACCCTCAGTCTGGAACTGGAAGATCAAGAAACGCCTGG
CCACCATGGAGGAAGAAGGGAACAAACTGAAAAACCAAAATCAAGGCGGC
AGCAGCAGCAGCAGCAGCGGTAACGGCGGCGAAGGTTTTGGACCGTTGCC
GGGAGAGAAGGTGATTGCCTTGGATGAGAATCTCCCGGACGGGGCTCTTG
AAGCCTACTGGGCGGAGTTAAGGAGGGAGAGGGAGGTCCAACGAGGAGGT
GGAGGGGAAGGGGGGGGGAAGAGAAGGAGAAGAGCGGGAAGGCGAAGCGG
AGTACGATCAAGGTATGGGAGTGGATGGAGGAAGGCAGGGAGAGAGGGGA
GGGAAGGAGGGAAGATGGACGCAGAGGCGGAGAAGGGTATTAAGCCCTCG
TATGCAGTAACTCGTGAAGTGACATATGAGGGTGCGCTTCTTGAGCCGAG
TGAAGCTCGGGGTTGGAAAGGAGGAGTGATGGGGTTAGAGAAAGAGGGAG
GAATATTCGGTGTACGTATTCATTCACAGGCTCCTTCATTGGGATTAAAA
TTCTTTGGTGGTCGCTCATGTTTCAGCTTTCTCCTCTTCAAACTCCCATA
TGTACCACAGAGACACCTATTGTTCGGATGGAATTATGCACCCAAGAAGA
ACAAAGGAGGAGCAGGATCAGGAGAAGAAAAAGCAGCGGCAGGAGGAAAG
AGAGGCGCCCTATTTCCGACCAAGGCTCCAGCACCAGGACCAGCAGCAAC
AGCAGCAGCAATGGCAAGCACTGCGGGGAAATAGAAATGATGCCGGAGGG
AAGGAAGGGCGGGGATCATTCGATCTGTGGGGGGCTCGGACGGTACGCGT
GGAAACCTGCGGGTTAACATGGCATGACTAATAAGCAGACGCGATTAAAA
TTTTTGCTCGAAGTAGCTGATGGCTTCTGCTTTGCCATCGCTTAGATTAT
TACCATTTTTTTTATTTTTTTTTCATTTCTTTCACCTATTGACCTAACCG
TATAAGGAGGCGGAGGAGGAGGAGGGGGCGGAGGCGGTGGAAGCAGAGGA
GAAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAGGAGGACGAGGACGAGG
CAGAGGAGGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCGAGGACTTT
GTTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGACGGCAATGGGGCA
CGTAACATCCTACAGGTGTACAGGAGTATGGTCCGTGGGAAGGTTCGTCC
CCATGATCTTCGGTTTGGTCAACCGCGGCAAGATATGCGGGCACTCTATG
TGTAGCATTCCCGCTGACCTCCTCTTTTATCCTCCTCCCCCTTCTCCTCC
TTGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCGAAAAACCTGTCA
AGGTCGCTAGTAAAACTCGGACCAAAAATAAGGGATGA
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Coding sequence (CDS) from alignment at chr10:300995..303232+

>NO10G00970.1 ID=NO10G00970.1|Name=NO10G00970.1|organism=Nannochloropsis oceanica|type=CDS|length=1296bp|location=Sequence derived from alignment at chr10:300995..303232+ (Nannochloropsis oceanica)
ATGAGCGCCGGCGTCCGTCGCCGACATCATCTCCCGGTCACGTTACCGCA
CTCTGTCTCTCAAGCACAAAGCAGCAAATGGCAAGTGCCCTCCGAGCCCA
ACCGCACCCTGGAGATCATACACATGCCGCAGGGGGACCTAGTCATGCAT
GCCCTCACGTCTACGATACCTGCCTTGGGTGTTAGAAGGAACCTGGCGCA
GCATTTGCTCAAGAAGCGTCCACTGCTGATGGGAGGAGGCGGAGGAGCAG
GTGGAGACTCAGGACTCCTGCATAACTCTCATAGCTTTCACAGCTCGGCG
CCTTCGCTGGGAGGCGGCACACCGGGGGAATGGAATCACGTCTGGAACTG
GAAGATCAAGAAACGCCTGGCCACCATGGAGGAAGAAGGGAACAAACTGA
AAAACCAAAATCAAGGCGGCAGCAGCAGCAGCAGCAGCGGTAACGGCGGC
GAAGGTTTTGGACCGTTGCCGGGAGAGAAGGTGATTGCCTTGGATGAGAA
TCTCCCGGACGGGGCTCTTGAAGCCTACTGGGCGGAGTTAAGGAGGGAGA
GGGAGGTCCAACGAGGAGGTGGAGGGGAAGGGGGGGGGAAGAGAAGGAGA
AGAGCGGGAAGGCGAAGCGGAGTACGATCAAGAGACACCTATTGTTCGGA
TGGAATTATGCACCCAAGAAGAACAAAGGAGGAGCAGGATCAGGAGAAGA
AAAAGCAGCGGCAGGAGGAAAGAGAGGCGCCCTATTTCCGACCAAGGCTC
CAGCACCAGGACCAGCAGCAACAGCAGCAGCAATGGCAAGCACTGCGGGG
AAATAGAAATGATGCCGGAGGGAAGGAAGGGCGGGGATCATTCGATCTGT
GGGGGGCTCGGACGGAGGCGGAGGAGGAGGAGGGGGCGGAGGCGGTGGAA
GCAGAGGAGAAGGAGGCGGAGGCGGAGGAGGCGGAGGCGGAGGAGGACGA
GGACGAGGCAGAGGAGGAGGCAGAGGAGGAGGTCATGGGCGGGCCATCCG
AGGACTTTGTTGGTGTGACACCTGTGAACAGTTCGTGTCTCGGGACGGCA
ATGGGGCACGTAACATCCTACAGGTGTACAGGAGTATGGTCCGTGGGAAG
GTTCGTCCCCATGATCTTCGGTTTGGTCAACCGCGGCAAGATATGCGGGC
ACTCTATGTGTAGCATTCCCGCTGACCTCCTCTTTTATCCTCCTCCCCCT
TCTCCTCCTTGCCCTGTGTGGGCCGTCCGGGGACTTTGCCTGATCGAAAA
ACCTGTCAAGGTCGCTAGTAAAACTCGGACCAAAAATAAGGGATGA
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Synonyms
Publications