NO10G00940.1, NO10G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00940.1
Unique NameNO10G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr10:292289..294271 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:292289..294271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO10G00940.1 vs.
Match: XP_005854587.1 (hypothetical protein NGA_0175600 [Nannochloropsis gaditana CCMP526]; EKU21768.1 hypothetical protein NGA_0175600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 519.6 bits (1337), Expect = 8.700e-144
Identity = 260/356 (73.03%), Postives = 295/356 (82.87%), Query Frame = 0 
Query:   51 EQADSSTGHSSKAAAVDRHGFLHRLAVAAAAGVLGSSTSSTSGPLTLPPTAKAIGELAEWAPDQRFLQHLVINVPDMAAALSFYLDGLQMQMLRTRIVNGKNGTFVGFGPETLKVPGDWYPGVSSFGVYGAHFSLELNEVSKAGEGGDTPILDPGTAVAYLQLAVPSLRLSKLVESGGVVKSAYGWVLVDSPGGLRHQVIVGSRRDPVMMLALNVPDLKKATDFYTNVMGMKEQEYPLSRIPESIYEPKQPKGSKYLAYNEDGFGILLLPLPKKEAKNGVRLGGVVDKLAVLATDVVGKGGAEAWKEGGVEVKYAGEAPGIGTRVALTADPNTGLGLVLVEREDLEKELVGTPSAG 407
            E  ++   +  K   +DR G L R+ VA  AG+LGSS   T    + P  A AIGEL EWA + RF QHLVINVPDMAAALSFY+DGLQM +LR+R+V G+N TFVG+GPETLK P  WYPGVSSF +YGAHF LELNEV K  EG DTP+LDPG AVAYLQLAVPSLRLSKL E+GG +KSAYGWVLVDSPGGLRHQVIVG RRDP+MMLALNVPD++KA+ FY N +GM+EQ YPLSRIPESIYEPKQPKGS++LA++EDGFGILLLPLPKKEAK GVRLGGVVDKLA+L TDVVGKGGAE WK  GV+V++AGEAPGIGT+VA+T DP TGLG+VLVE  DLEKELVGT SAG
Sbjct:   10 ENVENGVPNCRKLKFIDRQGLLQRVTVATTAGILGSSI--TGAFPSCPNAANAIGELPEWASNPRFTQHLVINVPDMAAALSFYMDGLQMHVLRSRLVGGQNSTFVGYGPETLKTPKAWYPGVSSFSMYGAHFVLELNEVLKTEEG-DTPVLDPGNAVAYLQLAVPSLRLSKLAEAGGKIKSAYGWVLVDSPGGLRHQVIVGMRRDPIMMLALNVPDVQKASGFYVNALGMREQPYPLSRIPESIYEPKQPKGSRFLAFSEDGFGILLLPLPKKEAKAGVRLGGVVDKLAILGTDVVGKGGAEDWKASGVDVRFAGEAPGIGTKVAVTNDPVTGLGVVLVEANDLEKELVGTVSAG 362
The following BLAST results are available for this feature:
BLAST of NO10G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854587.18.700e-14473.03hypothetical protein NGA_0175600 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00940NO10G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00940.1NO10G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00940.1.cds1NO10G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00940.1.cds2NO10G00940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00940.1.cds3NO10G00940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00940.1 ID=NO10G00940.1|Name=NO10G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
AAACAAACAGCGCGCCTCTCCTCATCAGTCATGCCAGCAGTCCGGAGGAG
GTTGTGGCCATTGTTGGCGCTCTTCTTCGGTTGCTCCCAGGCCTTCTTCG
TCTCGCCGCCCACTTCCGCCCACAGCGTCTCAGGACGACACGAGACAGTA
TTGAGAGCTTCCACGGATGACGCCTGCATCGAGCAAGCCGACAGCAGCAC
CGGTCACTCATCGAAGGCTGCTGCGGTCGACCGGCACGGCTTCTTGCACC
GCTTGGCTGTCGCTGCGGCTGCGGGAGTTTTGGGTAGCAGTACCAGCAGT
ACGTCTGGACCTCTCACTCTCCCACCCACCGCCAAAGCCATTGGGGAGTT
GGCTGAGTGGGCACCGGACCAACGATTCTTGCAGCACCTTGTGATTAATG
TGCCGGACATGGCAGCAGCGCTGTCGTTTTACCTTGATGGGTTGCAGATG
CAGATGTTGCGGACGCGTATTGTGAATGGGAAGAATGGCACCTTTGTGGG
TTTTGGACCAGAGACGTTGAAAGTGCCAGGGGATTGGTATCCTGGCGTTT
CTTCGTTCGGGGTGTATGGGGCACACTTTTCTCTGGAACTAAATGAGGTG
TCCAAGGCGGGAGAGGGCGGCGACACCCCCATCCTCGACCCGGGCACCGC
CGTCGCCTATCTCCAACTCGCCGTTCCCTCCCTCCGTCTCTCGAAGCTGG
TGGAATCGGGCGGAGTTGTCAAGTCAGCTTATGGGTGGGTGCTGGTAGAC
TCACCCGGGGGGCTACGGCATCAGGTCATCGTCGGCTCCCGCCGAGACCC
CGTAATGATGCTTGCATTGAATGTCCCCGACTTGAAGAAAGCCACAGATT
TCTACACCAACGTCATGGGAATGAAAGAGCAAGAGTATCCGCTCTCTCGC
ATTCCCGAGTCGATCTACGAACCTAAGCAGCCCAAGGGGAGTAAATATCT
TGCCTATAACGAGGACGGGTTCGGGATCCTCCTCCTCCCCCTCCCCAAGA
AAGAGGCAAAGAACGGAGTACGCCTTGGCGGGGTCGTAGACAAATTAGCG
GTTTTGGCGACGGACGTGGTGGGGAAGGGAGGGGCGGAGGCATGGAAGGA
GGGAGGGGTGGAGGTGAAGTACGCGGGCGAGGCACCGGGGATAGGGACGA
GGGTGGCCTTGACCGCCGATCCGAACACTGGCCTGGGCCTGGTGCTGGTG
GAGAGGGAGGATTTAGAGAAGGAGCTCGTGGGAACGCCCTCGGCGGGGGG
AGGAAAGATTCAGGGATAGGGAGGGAGGAAGGAAGGGGAGGTAGAGCGTC
TGGAGACGGAGACAAAGGGGTTAGATAAGGAGGGTGGTGAGCAGGTGTTT
GTAAGAGAATGTCGTGGGTGTGAAGGAGCGGAGGGAGTGTGTATGCGACG
AGCACTTGACTCTTCTGTTGGGTCGAGGTGGAGCCTATGAGCTTACATAT
AAAATGATAGCACATAAATTTTAGACTTACATTAATTAGACCTCGAGTAA
AGAAAAAAAAAGTGCCACTGAGCCGCCCAGCGAAACATATGAAAATGTCA
CCTTTTGTATTTGTACCTACTTACCCGAATCTCTCCCTTCTTCCCCCCCC
CCCCA
back to top

protein sequence of NO10G00940.1

>NO10G00940.1-protein ID=NO10G00940.1-protein|Name=NO10G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MPAVRRRLWPLLALFFGCSQAFFVSPPTSAHSVSGRHETVLRASTDDACI
EQADSSTGHSSKAAAVDRHGFLHRLAVAAAAGVLGSSTSSTSGPLTLPPT
AKAIGELAEWAPDQRFLQHLVINVPDMAAALSFYLDGLQMQMLRTRIVNG
KNGTFVGFGPETLKVPGDWYPGVSSFGVYGAHFSLELNEVSKAGEGGDTP
ILDPGTAVAYLQLAVPSLRLSKLVESGGVVKSAYGWVLVDSPGGLRHQVI
VGSRRDPVMMLALNVPDLKKATDFYTNVMGMKEQEYPLSRIPESIYEPKQ
PKGSKYLAYNEDGFGILLLPLPKKEAKNGVRLGGVVDKLAVLATDVVGKG
GAEAWKEGGVEVKYAGEAPGIGTRVALTADPNTGLGLVLVEREDLEKELV
GTPSAGGGKIQG*
back to top

mRNA from alignment at chr10:292289..294271-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00940.1 ID=NO10G00940.1|Name=NO10G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at chr10:292289..294271- (Nannochloropsis oceanica)
AAACAAACAGCGCGCCTCTCCTCATCAGTCATGCCAGCAGTCCGGAGGAG
GTTGTGGCCATTGTTGGCGCTCTTCTTCGGTTGCTCCCAGGCCTTCTTCG
TCTCGCCGCCCACTTCCGCCCACAGCGTCTCAGGACGACACGAGACAGTA
TTGAGAGGTAATGCGTTCACTGATTGCTTTCTTTTGGCTCGAGTTCTACA
CCCCACTAGTGTTTGCCACCCCAGACCCACTATCAATCTCCCCCTACTTC
ACCCACTGGCTTCGCCGCTCACTCCTTCAATGCGTTATCTCGCCCTCAAA
TAAACGACACAACAGCTTCCACGGATGACGCCTGCATCGAGCAAGCCGAC
AGCAGCACCGGTCACTCATCGAAGGCTGCTGCGGTCGACCGGCACGGCTT
CTTGCACCGCTTGGCTGTCGCTGCGGCTGCGGGAGTTTTGGGTAGCAGTA
CCAGCAGTACGTCTGGACCTCTCACTCTCCCACCCACCGCCAAAGCCATT
GGGGAGTTGGCTGAGTGGGCACCGGACCAACGATTCTTGCAGCACCTTGT
GATTAATGTGCCGGACATGGCAGCAGCGCTGTCGTTTTACCTTGATGGGT
TGCAGATGCAGATGTTGCGGACGCGTATTGTGAATGGGAAGAATGGCACC
TTTGTGGGTTTTGGACCAGAGACGTTGAAAGTGCCAGGGGATTGGTATCC
TGGCGTTTCTTCGTTCGGGGTGTATGGGGCACACTTTTCTCTGGAACTAA
ATGAGGTGTCCAAGGCGGGAGAGGTGAGTAAAAGAGTTGCGGAGGGAGGG
AGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGACAGTGGGAGGA
CGGTCTGTATGCATGAATGGGCATATGGACGGAGAAATGCAAAGAAACAT
TCGTAAGAGTGGATAAGAATTGGGGAAGTAGGAGATGTGGCCATTGAAAT
CAGCAGTTTCTTCCTTCTCCTCCTATCTCCTTTTCCCCTTAAGGGCGGCG
ACACCCCCATCCTCGACCCGGGCACCGCCGTCGCCTATCTCCAACTCGCC
GTTCCCTCCCTCCGTCTCTCGAAGCTGGTGGAATCGGGCGGAGTTGTCAA
GTCAGCTTATGGGTGGGTGCTGGTAGACTCACCCGGGGGGCTACGGCATC
AGGTCATCGTCGGCTCCCGCCGAGACCCCGTAATGATGCTTGCATTGAAT
GTCCCCGACTTGAAGAAAGCCACAGATTTCTACACCAACGTCATGGGAAT
GAAAGAGCAAGAGTATCCGCTCTCTCGCATTCCCGAGTCGATCTACGAAC
CTAAGCAGCCCAAGGGGAGTAAATATCTTGCCTATAACGAGGACGGGTTC
GGGATCCTCCTCCTCCCCCTCCCCAAGAAAGAGGCAAAGAACGGAGTACG
CCTTGGCGGGGTCGTAGACAAATTAGCGGTTTTGGCGACGGACGTGGTGG
GGAAGGGAGGGGCGGAGGCATGGAAGGAGGGAGGGGTGGAGGTGAAGTAC
GCGGGCGAGGCACCGGGGATAGGGACGAGGGTGGCCTTGACCGCCGATCC
GAACACTGGCCTGGGCCTGGTGCTGGTGGAGAGGGAGGATTTAGAGAAGG
AGCTCGTGGGAACGCCCTCGGCGGGGGGAGGAAAGATTCAGGGATAGGGA
GGGAGGAAGGAAGGGGAGGTAGAGCGTCTGGAGACGGAGACAAAGGGGTT
AGATAAGGAGGGTGGTGAGCAGGTGTTTGTAAGAGAATGTCGTGGGTGTG
AAGGAGCGGAGGGAGTGTGTATGCGACGAGCACTTGACTCTTCTGTTGGG
TCGAGGTGGAGCCTATGAGCTTACATATAAAATGATAGCACATAAATTTT
AGACTTACATTAATTAGACCTCGAGTAAAGAAAAAAAAAGTGCCACTGAG
CCGCCCAGCGAAACATATGAAAATGTCACCTTTTGTATTTGTACCTACTT
ACCCGAATCTCTCCCTTCTTCCCCCCCCCCCCA
back to top

Coding sequence (CDS) from alignment at chr10:292289..294271-

>NO10G00940.1 ID=NO10G00940.1|Name=NO10G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr10:292289..294271- (Nannochloropsis oceanica)
ATGCCAGCAGTCCGGAGGAGGTTGTGGCCATTGTTGGCGCTCTTCTTCGG
TTGCTCCCAGGCCTTCTTCGTCTCGCCGCCCACTTCCGCCCACAGCGTCT
CAGGACGACACGAGACAGTATTGAGAGCTTCCACGGATGACGCCTGCATC
GAGCAAGCCGACAGCAGCACCGGTCACTCATCGAAGGCTGCTGCGGTCGA
CCGGCACGGCTTCTTGCACCGCTTGGCTGTCGCTGCGGCTGCGGGAGTTT
TGGGTAGCAGTACCAGCAGTACGTCTGGACCTCTCACTCTCCCACCCACC
GCCAAAGCCATTGGGGAGTTGGCTGAGTGGGCACCGGACCAACGATTCTT
GCAGCACCTTGTGATTAATGTGCCGGACATGGCAGCAGCGCTGTCGTTTT
ACCTTGATGGGTTGCAGATGCAGATGTTGCGGACGCGTATTGTGAATGGG
AAGAATGGCACCTTTGTGGGTTTTGGACCAGAGACGTTGAAAGTGCCAGG
GGATTGGTATCCTGGCGTTTCTTCGTTCGGGGTGTATGGGGCACACTTTT
CTCTGGAACTAAATGAGGTGTCCAAGGCGGGAGAGGGCGGCGACACCCCC
ATCCTCGACCCGGGCACCGCCGTCGCCTATCTCCAACTCGCCGTTCCCTC
CCTCCGTCTCTCGAAGCTGGTGGAATCGGGCGGAGTTGTCAAGTCAGCTT
ATGGGTGGGTGCTGGTAGACTCACCCGGGGGGCTACGGCATCAGGTCATC
GTCGGCTCCCGCCGAGACCCCGTAATGATGCTTGCATTGAATGTCCCCGA
CTTGAAGAAAGCCACAGATTTCTACACCAACGTCATGGGAATGAAAGAGC
AAGAGTATCCGCTCTCTCGCATTCCCGAGTCGATCTACGAACCTAAGCAG
CCCAAGGGGAGTAAATATCTTGCCTATAACGAGGACGGGTTCGGGATCCT
CCTCCTCCCCCTCCCCAAGAAAGAGGCAAAGAACGGAGTACGCCTTGGCG
GGGTCGTAGACAAATTAGCGGTTTTGGCGACGGACGTGGTGGGGAAGGGA
GGGGCGGAGGCATGGAAGGAGGGAGGGGTGGAGGTGAAGTACGCGGGCGA
GGCACCGGGGATAGGGACGAGGGTGGCCTTGACCGCCGATCCGAACACTG
GCCTGGGCCTGGTGCTGGTGGAGAGGGAGGATTTAGAGAAGGAGCTCGTG
GGAACGCCCTCGGCGGGGGGAGGAAAGATTCAGGGATAG
back to top
Synonyms
Publications