|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:289325..291132 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00920.2 vs.
Match: EWM25325.1 (mitochondrial carrier family [Nannochloropsis gaditana]) HSP 1 Score: 443.0 bits (1138), Expect = 6.600e-121 Identity = 213/271 (78.60%), Postives = 239/271 (88.19%), Query Frame = 0
Query: 1 MVREGGIGSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFREGNTERDLTLGEMTAAGAWAGLLQSPSRQVFERVKSVMQVQKGGGGGDKAPYKWSGECVVQLVKKEGLYNGLFRGLDATVLRELPQFAVYYPIYELSIRALKEFHDTSSSS----------TRKRSSSTPLPPHLLLLAGGIAGTLQWLPPFYCIDVLKSRMQSALPGVYSSVWDCAKKSYQTEGIGVFFRGLPVALIRAFPLHACIFFGYEVTLAALHDEELGSILPPPE 262
MVREGGI SLYRGLLSPQAGFGVTFAISFAGYGQGTRFFR+G+ +R+LTLGEMTA+GAWAGLLQSP+RQ+FER+KSVMQV+K GG DK PY+WSGEC+VQLV+KEGLYNGLFRGLDAT LRE+PQFAVYYP+YE+++RAL++ S++S RK SSSTPLPPHLLLLAGG+AGT+QWLPPFYC+DVLKSRMQSALPGVY +VWDCAKKSYQ EGIGVFFRGLPVALIRAFPL+ACIF GYE TLAALH EE LPPPE
Sbjct: 1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00920.2 ID=NO10G00920.2|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp TTGTGGCTGTGCAGCGCATGGAGGAGGGTGGAGGGTGAAATATAGCGCTG TGGTGCATAAATTAAAGAAGCAGACACCGCTTCGCTCCTCGCAGTCCGGG GAAGCAGCTAATGCCGCGCGCACTCGTGTCTTTCAGGCTCTGATACATGG CTCGGGGAGCTAGGGAAGCTAGCGATGTGTGGCAGGGTGCATGCCAGCGT GTGCTGGTGTTGTTGTGAGTGCGGTCTTGGGGAAAGCAAAGCCAACTTGG CTTTGAACGGCGCCACCATCGCCAAAATGGCCAGCAGGCCCTCCGGGAGC CCGAAACTTCTCCTTGCCTCGACTTTGACGCCCCAGTCCACCCTACGCAG GTCAAGCACAACGAAACGAAGCAGTCCAAGACGACCACGGCTATAATTCC GAGGACATAGACGGTGCAATGGGGGGCAATCCCTTTCTGCACGAGCTCTT GGCGGGTAAGTAAAGCTTATGTGTACAATTTCCCGACGTGAAGATCGATG TACTGTTATCCCACGAGTGTGTGGATAGAAATGTGCTATTATGCAAATCA AGTTATCACAAGCCTGGCAGACATGAGGATTTTCTTTCTTGTCCCAAAGG TGACGTAAGCTCTCGTCCCTTGTACTTTTCTGTAAAGACCCGTCTCCCCC ACACCCTTCGCCCACTCCCTTACTCACTACCAAGGTACGGTGGGCGGTGT CTTTGGCATCACCTTGATCTTCCCCCTCGACACTGCCAAGGTCCGGCAAC AAGCTTATCCGCATTACAAAGGCCCGCTGGACGTGATACGCTCCATGGTC CGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCCTCAAGC CGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGCAAGGGA CGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTGGGGGAA ATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTCGAGACA GGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAGGAGGAG GGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTTCAGCTG GTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGATGCCAC GGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTTACGAAC TCTCCATCCGCGCTCTCAAGGAATTCCACGACACCTCCTCCTCCAGCACC CGGAAGCGGTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCCTCCTTGC CGGTGGCATTGCCGGGACTCTCCAATGGCTTCCACCCTTCTATTGCATCG ATGTGTTGAAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTATTCGTCC GTCTGGGATTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCGGTGTCTT TTTCCGGGGGCTGCCAGTGGCGCTGATAAGGGCATTTCCGCTGCATGCCT GCATCTTCTTCGGATACGAGGTGACCTTGGCTGCTCTGCATGATGAGGAG TTAGGAAGCATTTTGCCGCCGCCGGAGTAGGGATGAACGGAGAAAGGGGG GGGCAAGAAAGAGGACATGTAAAGACATATAAAAGAACTAACACTTGGAG CAGGGAAAGGTCTCACAAG back to topprotein sequence of NO10G00920.2 >NO10G00920.2-protein ID=NO10G00920.2-protein|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp MVREGGIGSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFREGNTERDLTL GEMTAAGAWAGLLQSPSRQVFERVKSVMQVQKGGGGGDKAPYKWSGECVV QLVKKEGLYNGLFRGLDATVLRELPQFAVYYPIYELSIRALKEFHDTSSS STRKRSSSTPLPPHLLLLAGGIAGTLQWLPPFYCIDVLKSRMQSALPGVY SSVWDCAKKSYQTEGIGVFFRGLPVALIRAFPLHACIFFGYEVTLAALHD EELGSILPPPE* back to topmRNA from alignment at chr10:289325..291132+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00920.2 ID=NO10G00920.2|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at chr10:289325..291132+ (Nannochloropsis oceanica) TTGTGGCTGTGCAGCGCATGGAGGAGGGTGGAGGGTGAAATATAGCGCTG
TGGTGCATAAATTAAAGAAGCAGACACCGCTTCGCTCCTCGCAGTCCGGG
GAAGCAGCTAATGCCGCGCGCACTCGTGTCTTTCAGGCTCTGATACATGG
CTCGGGGAGCTAGGGAAGCTAGCGATGTGTGGCAGGGTGCATGCCAGCGT
GTGCTGGTGTTGTTGTGAGTGCGGTCTTGGGGAAAGCAAAGCCAACTTGG
CTTTGAACGGCGCCACCATCGCCAAAATGGCCAGCAGGCCCTCCGGGAGC
CCGAAACTTCTCCTTGCCTCGACTTTGACGCCCCAGTCCACCCTACGCAG
GTCAAGCACAACGAAACGAAGCAGTCCAAGACGACCACGGCTATAATTCC
GAGGACATAGACGGTGCAATGGGGGGCAATCCCTTTCTGCACGAGCTCTT
GGCGGGTAAGTAAAGCTTATGTGTACAATTTCCCGACGTGAAGATCGATG
TACTGTTATCCCACGAGTGTGTGGATAGAAATGTGCTATTATGCAAATCA
AGTTATCACAAGCCTGGCAGACATGAGGATTTTCTTTCTTGTCCCAAAGG
TGACGTAAGCTCTCGTCCCTTGTACTTTTCTGTAAAGACCCGTCTCCCCC
ACACCCTTCGCCCACTCCCTTACTCACTACCAAGGTACGGTGGGCGGTGT
CTTTGGCATCACCTTGATCTTCCCCCTCGACACTGCCAAGGTCCGGCAAC
AAGCTTATCCGCATTACAAAGGCCCGCTGGACGTGATACGCTCCATGGTC
CGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCCTCAAGC
CGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGCAAGGGA
CGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTGGGGGAA
ATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTCGAGACA
GGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAGGAGGAG
GGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTTCAGCTG
GTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGATGCCAC
GGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTGTAAGAT
GTTGAAAAAGGGTGAAGGGAGGGCTGGGGGGAGACCGAAGAGAGGATATA
CGACTCGTCCTCTTCCACCTGGGAGCATTTAGCTTACCTACCATTCCATT
TTTTGTTTTCCCTCCCACCCTGTCTATACCAGTACGAACTCTCCATCCGC
GCTCTCAAGGAATTCCACGACACCTCCTCCTCCAGCACCCGGAAGCGGTC
CTCCTCGACCCCCCTCCCTCCCCACCTCCTCCTCCTTGCCGGTGGCATTG
CCGGGACTCTCCAATGGCTTCCACCCTTCTATTGCATCGATGTGTTGAAG
AGCAGAATGCAGAGTGCCTTGCCTGGAGTGTATTCGTCCGTCTGGGATTG
CGCTAAAAAGTCCTACCAAACTGAGGGGATCGGTGTCTTTTTCCGGGGGC
TGCCAGTGGCGCTGATAAGGGCATTTCCGCTGCATGCCTGCATCTTCTTC
GGATACGAGGTGACCTTGGCTGCTCTGCATGATGAGGAGTTAGGAAGCAT
TTTGCCGCCGCCGGAGTAGGGATGAACGGAGAAAGGGGGGGGCAAGAAAG
AGGACATGTAAAGACATATAAAAGAACTAACACTTGGAGCAGGGAAAGGT
CTCACAAG back to topCoding sequence (CDS) from alignment at chr10:289325..291132+ >NO10G00920.2 ID=NO10G00920.2|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr10:289325..291132+ (Nannochloropsis oceanica) ATGGTCCGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCC TCAAGCCGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGC AAGGGACGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTG GGGGAAATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTC GAGACAGGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAG GAGGAGGGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTT CAGCTGGTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGA TGCCACGGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTT ACGAACTCTCCATCCGCGCTCTCAAGGAATTCCACGACACCTCCTCCTCC AGCACCCGGAAGCGGTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCCT CCTTGCCGGTGGCATTGCCGGGACTCTCCAATGGCTTCCACCCTTCTATT GCATCGATGTGTTGAAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTAT TCGTCCGTCTGGGATTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCGG TGTCTTTTTCCGGGGGCTGCCAGTGGCGCTGATAAGGGCATTTCCGCTGC ATGCCTGCATCTTCTTCGGATACGAGGTGACCTTGGCTGCTCTGCATGAT GAGGAGTTAGGAAGCATTTTGCCGCCGCCGGAGTAG back to top
|