NO10G00920.2, NO10G00920.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00920.2
Unique NameNO10G00920.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1669
Alignment locationchr10:289325..291132 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:289325..291132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G00920.2 vs.
Match: EWM25325.1 (mitochondrial carrier family [Nannochloropsis gaditana])

HSP 1 Score: 443.0 bits (1138), Expect = 6.600e-121
Identity = 213/271 (78.60%), Postives = 239/271 (88.19%), Query Frame = 0
Query:    1 MVREGGIGSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFREGNTERDLTLGEMTAAGAWAGLLQSPSRQVFERVKSVMQVQKGGGGGDKAPYKWSGECVVQLVKKEGLYNGLFRGLDATVLRELPQFAVYYPIYELSIRALKEFHDTSSSS----------TRKRSSSTPLPPHLLLLAGGIAGTLQWLPPFYCIDVLKSRMQSALPGVYSSVWDCAKKSYQTEGIGVFFRGLPVALIRAFPLHACIFFGYEVTLAALHDEELGSILPPPE 262
            MVREGGI SLYRGLLSPQAGFGVTFAISFAGYGQGTRFFR+G+ +R+LTLGEMTA+GAWAGLLQSP+RQ+FER+KSVMQV+K  GG DK PY+WSGEC+VQLV+KEGLYNGLFRGLDAT LRE+PQFAVYYP+YE+++RAL++    S++S           RK SSSTPLPPHLLLLAGG+AGT+QWLPPFYC+DVLKSRMQSALPGVY +VWDCAKKSYQ EGIGVFFRGLPVALIRAFPL+ACIF GYE TLAALH EE    LPPPE
Sbjct:    1 MVREGGISSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFRKGDNKRELTLGEMTASGAWAGLLQSPARQIFERIKSVMQVRKAAGGADKPPYRWSGECLVQLVRKEGLYNGLFRGLDATALREVPQFAVYYPLYEMNVRALQKMMAASNASGSSSNESNIVHRKPSSSTPLPPHLLLLAGGVAGTVQWLPPFYCLDVLKSRMQSALPGVYDNVWDCAKKSYQQEGIGVFFRGLPVALIRAFPLNACIFLGYETTLAALHQEEEIPHLPPPE 271          
The following BLAST results are available for this feature:
BLAST of NO10G00920.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25325.16.600e-12178.60mitochondrial carrier family [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00920NO10G00920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00920.2NO10G00920.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00920.2.cds1NO10G00920.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00920.2.cds2NO10G00920.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00920.2 ID=NO10G00920.2|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp
TTGTGGCTGTGCAGCGCATGGAGGAGGGTGGAGGGTGAAATATAGCGCTG
TGGTGCATAAATTAAAGAAGCAGACACCGCTTCGCTCCTCGCAGTCCGGG
GAAGCAGCTAATGCCGCGCGCACTCGTGTCTTTCAGGCTCTGATACATGG
CTCGGGGAGCTAGGGAAGCTAGCGATGTGTGGCAGGGTGCATGCCAGCGT
GTGCTGGTGTTGTTGTGAGTGCGGTCTTGGGGAAAGCAAAGCCAACTTGG
CTTTGAACGGCGCCACCATCGCCAAAATGGCCAGCAGGCCCTCCGGGAGC
CCGAAACTTCTCCTTGCCTCGACTTTGACGCCCCAGTCCACCCTACGCAG
GTCAAGCACAACGAAACGAAGCAGTCCAAGACGACCACGGCTATAATTCC
GAGGACATAGACGGTGCAATGGGGGGCAATCCCTTTCTGCACGAGCTCTT
GGCGGGTAAGTAAAGCTTATGTGTACAATTTCCCGACGTGAAGATCGATG
TACTGTTATCCCACGAGTGTGTGGATAGAAATGTGCTATTATGCAAATCA
AGTTATCACAAGCCTGGCAGACATGAGGATTTTCTTTCTTGTCCCAAAGG
TGACGTAAGCTCTCGTCCCTTGTACTTTTCTGTAAAGACCCGTCTCCCCC
ACACCCTTCGCCCACTCCCTTACTCACTACCAAGGTACGGTGGGCGGTGT
CTTTGGCATCACCTTGATCTTCCCCCTCGACACTGCCAAGGTCCGGCAAC
AAGCTTATCCGCATTACAAAGGCCCGCTGGACGTGATACGCTCCATGGTC
CGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCCTCAAGC
CGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGCAAGGGA
CGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTGGGGGAA
ATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTCGAGACA
GGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAGGAGGAG
GGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTTCAGCTG
GTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGATGCCAC
GGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTTACGAAC
TCTCCATCCGCGCTCTCAAGGAATTCCACGACACCTCCTCCTCCAGCACC
CGGAAGCGGTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCCTCCTTGC
CGGTGGCATTGCCGGGACTCTCCAATGGCTTCCACCCTTCTATTGCATCG
ATGTGTTGAAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTATTCGTCC
GTCTGGGATTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCGGTGTCTT
TTTCCGGGGGCTGCCAGTGGCGCTGATAAGGGCATTTCCGCTGCATGCCT
GCATCTTCTTCGGATACGAGGTGACCTTGGCTGCTCTGCATGATGAGGAG
TTAGGAAGCATTTTGCCGCCGCCGGAGTAGGGATGAACGGAGAAAGGGGG
GGGCAAGAAAGAGGACATGTAAAGACATATAAAAGAACTAACACTTGGAG
CAGGGAAAGGTCTCACAAG
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protein sequence of NO10G00920.2

>NO10G00920.2-protein ID=NO10G00920.2-protein|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MVREGGIGSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFREGNTERDLTL
GEMTAAGAWAGLLQSPSRQVFERVKSVMQVQKGGGGGDKAPYKWSGECVV
QLVKKEGLYNGLFRGLDATVLRELPQFAVYYPIYELSIRALKEFHDTSSS
STRKRSSSTPLPPHLLLLAGGIAGTLQWLPPFYCIDVLKSRMQSALPGVY
SSVWDCAKKSYQTEGIGVFFRGLPVALIRAFPLHACIFFGYEVTLAALHD
EELGSILPPPE*
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mRNA from alignment at chr10:289325..291132+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00920.2 ID=NO10G00920.2|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at chr10:289325..291132+ (Nannochloropsis oceanica)
TTGTGGCTGTGCAGCGCATGGAGGAGGGTGGAGGGTGAAATATAGCGCTG TGGTGCATAAATTAAAGAAGCAGACACCGCTTCGCTCCTCGCAGTCCGGG GAAGCAGCTAATGCCGCGCGCACTCGTGTCTTTCAGGCTCTGATACATGG CTCGGGGAGCTAGGGAAGCTAGCGATGTGTGGCAGGGTGCATGCCAGCGT GTGCTGGTGTTGTTGTGAGTGCGGTCTTGGGGAAAGCAAAGCCAACTTGG CTTTGAACGGCGCCACCATCGCCAAAATGGCCAGCAGGCCCTCCGGGAGC CCGAAACTTCTCCTTGCCTCGACTTTGACGCCCCAGTCCACCCTACGCAG GTCAAGCACAACGAAACGAAGCAGTCCAAGACGACCACGGCTATAATTCC GAGGACATAGACGGTGCAATGGGGGGCAATCCCTTTCTGCACGAGCTCTT GGCGGGTAAGTAAAGCTTATGTGTACAATTTCCCGACGTGAAGATCGATG TACTGTTATCCCACGAGTGTGTGGATAGAAATGTGCTATTATGCAAATCA AGTTATCACAAGCCTGGCAGACATGAGGATTTTCTTTCTTGTCCCAAAGG TGACGTAAGCTCTCGTCCCTTGTACTTTTCTGTAAAGACCCGTCTCCCCC ACACCCTTCGCCCACTCCCTTACTCACTACCAAGGTACGGTGGGCGGTGT CTTTGGCATCACCTTGATCTTCCCCCTCGACACTGCCAAGGTCCGGCAAC AAGCTTATCCGCATTACAAAGGCCCGCTGGACGTGATACGCTCCATGGTC CGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCCTCAAGC CGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGCAAGGGA CGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTGGGGGAA ATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTCGAGACA GGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAGGAGGAG GGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTTCAGCTG GTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGATGCCAC GGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTGTAAGAT GTTGAAAAAGGGTGAAGGGAGGGCTGGGGGGAGACCGAAGAGAGGATATA CGACTCGTCCTCTTCCACCTGGGAGCATTTAGCTTACCTACCATTCCATT TTTTGTTTTCCCTCCCACCCTGTCTATACCAGTACGAACTCTCCATCCGC GCTCTCAAGGAATTCCACGACACCTCCTCCTCCAGCACCCGGAAGCGGTC CTCCTCGACCCCCCTCCCTCCCCACCTCCTCCTCCTTGCCGGTGGCATTG CCGGGACTCTCCAATGGCTTCCACCCTTCTATTGCATCGATGTGTTGAAG AGCAGAATGCAGAGTGCCTTGCCTGGAGTGTATTCGTCCGTCTGGGATTG CGCTAAAAAGTCCTACCAAACTGAGGGGATCGGTGTCTTTTTCCGGGGGC TGCCAGTGGCGCTGATAAGGGCATTTCCGCTGCATGCCTGCATCTTCTTC GGATACGAGGTGACCTTGGCTGCTCTGCATGATGAGGAGTTAGGAAGCAT TTTGCCGCCGCCGGAGTAGGGATGAACGGAGAAAGGGGGGGGCAAGAAAG AGGACATGTAAAGACATATAAAAGAACTAACACTTGGAGCAGGGAAAGGT CTCACAAG
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Coding sequence (CDS) from alignment at chr10:289325..291132+

>NO10G00920.2 ID=NO10G00920.2|Name=NO10G00920.2|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at chr10:289325..291132+ (Nannochloropsis oceanica)
ATGGTCCGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCC
TCAAGCCGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGC
AAGGGACGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTG
GGGGAAATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTC
GAGACAGGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAG
GAGGAGGGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTT
CAGCTGGTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGA
TGCCACGGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTT
ACGAACTCTCCATCCGCGCTCTCAAGGAATTCCACGACACCTCCTCCTCC
AGCACCCGGAAGCGGTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCCT
CCTTGCCGGTGGCATTGCCGGGACTCTCCAATGGCTTCCACCCTTCTATT
GCATCGATGTGTTGAAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTAT
TCGTCCGTCTGGGATTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCGG
TGTCTTTTTCCGGGGGCTGCCAGTGGCGCTGATAAGGGCATTTCCGCTGC
ATGCCTGCATCTTCTTCGGATACGAGGTGACCTTGGCTGCTCTGCATGAT
GAGGAGTTAGGAAGCATTTTGCCGCCGCCGGAGTAG
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Synonyms
Publications