NO10G00910.1, NO10G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00910.1
Unique NameNO10G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length609
Alignment locationchr10:288101..289278 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:288101..289278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G00910.1 vs.
Match: EWM25322.1 (canine-like rab-type small g protein [Nannochloropsis gaditana])

HSP 1 Score: 374.8 bits (961), Expect = 1.700e-100
Identity = 187/202 (92.57%), Postives = 194/202 (96.04%), Query Frame = 0
Query:    1 MSGGGGGSNNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLASSRRKVELKEAQEYAAENGLLHLETSAKDAQNVKALFVEIAKRLPKAVVPVEREAFPIIAPKATKRGCC 203
            MS GGG S+NNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLA +RRKV+LK+A+EYA ENGLLH ETSAKDAQNVK LFVEIAKRLPKAV PVEREAFPI+APKA+KR CC
Sbjct:   30 MSSGGGSSSNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNAESFKGAKSWVKELQRRGDPSVIIALAGNKADLAGTRRKVDLKDAEEYARENGLLHFETSAKDAQNVKTLFVEIAKRLPKAVAPVEREAFPIVAPKASKRSCC 231          
The following BLAST results are available for this feature:
BLAST of NO10G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25322.11.700e-10092.57canine-like rab-type small g protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00910NO10G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00910.1NO10G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00910.1.cds1NO10G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00910.1.cds2NO10G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00910.1.cds3NO10G00910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00910.1 ID=NO10G00910.1|Name=NO10G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=609bp
ATGAGCGGCGGTGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAA
GCTGGTCCTTCTGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCA
GGTTTGTCCGCGACGAGTTCTTTGAGTACCAGGAACCTACCATCGGCGCC
GCCTTTCTCACGCAAGCCGTCGTCTTGGAGGACAGCACCGTCAAGTTCGA
GATTTGGGACACTGCAGGCCAAGAGCGCTATCGTTCCCTCGCCCCTATGT
ACTATCGGGGGGCGTCCGCGGCGATTGTGGTGTACGATATCACCAATGCC
GAGAGTTTCAAAGGCGCAAAGAGCTGGGTGAAAGAGCTTCAACGCCGGGG
GGACCCGAGCGTGATCATTGCCTTGGCCGGCAACAAAGCAGATTTAGCGA
GCAGTAGGCGGAAGGTGGAATTAAAGGAGGCCCAGGAATACGCAGCGGAG
AATGGTTTGTTGCACCTTGAGACGAGTGCCAAGGACGCGCAGAATGTCAA
GGCGTTGTTTGTGGAGATCGCCAAGAGGCTGCCCAAGGCAGTGGTACCGG
TAGAGAGGGAAGCGTTCCCTATTATTGCGCCAAAGGCGACGAAGAGGGGT
TGTTGTTGA
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protein sequence of NO10G00910.1

>NO10G00910.1-protein ID=NO10G00910.1-protein|Name=NO10G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSGGGGGSNNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA
AFLTQAVVLEDSTVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNA
ESFKGAKSWVKELQRRGDPSVIIALAGNKADLASSRRKVELKEAQEYAAE
NGLLHLETSAKDAQNVKALFVEIAKRLPKAVVPVEREAFPIIAPKATKRG
CC*
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mRNA from alignment at chr10:288101..289278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00910.1 ID=NO10G00910.1|Name=NO10G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1178bp|location=Sequence derived from alignment at chr10:288101..289278- (Nannochloropsis oceanica)
ATGAGCGGCGGTGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAA GCTGGTCCTTCTGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCA GGTTTGTCCGCGACGAGTTCTTTGAGTACCAGGTAAGTGAGAGGGAAAGG AGGGAGAAAAGAGATCGCTTAAAGAGGGGAGCCTGCATATGAATCTGTGC TTGGTTTTGTGATGGGATGACCGCGGAGTAGGTTCGTCATCGGGGTGCGT AAGGGGGTGATGATGGATCAGCCTGTGTAAGGGACTCGTCCCGCCATGAT CGCTACCGCGGTCATGTTCGCAGCACTTTGCACCTTTCTAGGATGCTGAC AACATTTGAGGCGGTAGGGCCTCTTTAAGTGCGTAAGATCTGCCGTTTGA TTTCGTGTCGCCCTTCCTCTCCCTTCCAACCTTTGTCATTCCACCTTCTC CTCTCTCACTTGCCCTTTTCAACTCCCATCGTTACCTCTCCAGGAACCTA CCATCGGCGCCGCCTTTCTCACGCAAGCCGTCGTCTTGGAGGACAGCACC GTCAAGTTCGAGATTTGGGACACTGCAGGCCAAGAGCGCTATCGTTCCCT CGCCCCTATGTACTATCGGGGGGCGTCCGCGGCGATTGTGGTGTACGATA TCACCAATGCCGAGAGTTTCAAAGGTAAGATGTGACGGAGGAGAGGCAAG AAGAATAACGACGACGAATGAAAATGAAATTTCTCAAGTTACTGACCGGC CTTATTGTGGTCTCCGCACTGTCACTAAATCTAATCTAATCTGAAACTTG GTCACTATTCCTCTGTTTGACGTACGTACTGATCCTTCCCCCCCCCCACC CTCTTTCATTCTTTCCGTTGTCCCAACCGCAGGCGCAAAGAGCTGGGTGA AAGAGCTTCAACGCCGGGGGGACCCGAGCGTGATCATTGCCTTGGCCGGC AACAAAGCAGATTTAGCGAGCAGTAGGCGGAAGGTGGAATTAAAGGAGGC CCAGGAATACGCAGCGGAGAATGGTTTGTTGCACCTTGAGACGAGTGCCA AGGACGCGCAGAATGTCAAGGCGTTGTTTGTGGAGATCGCCAAGAGGCTG CCCAAGGCAGTGGTACCGGTAGAGAGGGAAGCGTTCCCTATTATTGCGCC AAAGGCGACGAAGAGGGGTTGTTGTTGA
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Coding sequence (CDS) from alignment at chr10:288101..289278-

>NO10G00910.1 ID=NO10G00910.1|Name=NO10G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at chr10:288101..289278- (Nannochloropsis oceanica)
ATGAGCGGCGGTGGTGGCGGCAGCAACAACAACCGGGTCTGTCATTTCAA
GCTGGTCCTTCTGGGGGACACGGCGGTGGGGAAGTCATGCCTGGTCGTCA
GGTTTGTCCGCGACGAGTTCTTTGAGTACCAGGAACCTACCATCGGCGCC
GCCTTTCTCACGCAAGCCGTCGTCTTGGAGGACAGCACCGTCAAGTTCGA
GATTTGGGACACTGCAGGCCAAGAGCGCTATCGTTCCCTCGCCCCTATGT
ACTATCGGGGGGCGTCCGCGGCGATTGTGGTGTACGATATCACCAATGCC
GAGAGTTTCAAAGGCGCAAAGAGCTGGGTGAAAGAGCTTCAACGCCGGGG
GGACCCGAGCGTGATCATTGCCTTGGCCGGCAACAAAGCAGATTTAGCGA
GCAGTAGGCGGAAGGTGGAATTAAAGGAGGCCCAGGAATACGCAGCGGAG
AATGGTTTGTTGCACCTTGAGACGAGTGCCAAGGACGCGCAGAATGTCAA
GGCGTTGTTTGTGGAGATCGCCAAGAGGCTGCCCAAGGCAGTGGTACCGG
TAGAGAGGGAAGCGTTCCCTATTATTGCGCCAAAGGCGACGAAGAGGGGT
TGTTGTTGA
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Synonyms
Publications