NO10G00880.1, NO10G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00880.1
Unique NameNO10G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length993
Alignment locationchr10:279444..280522 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:279444..280522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00880.1 vs.
Match: XP_005855521.1 (1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526]; EKU20840.1 1-acylglycerone phosphate reductase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 436.8 bits (1122), Expect = 6.000e-119
Identity = 220/296 (74.32%), Postives = 253/296 (85.47%), Query Frame = 0 
Query:    6 LSPELLQGICMGVVFTVVLAFFFYQVLLLAFRKRFPIPAKGGAIVITGASTGIGNHAAQHLAKQGYIVYCTVRKPADATALEALGLKNLRPIIMDMASPSTIDTGTKQILTELASSQTPLVGLVNNAGIAQKFPLEFHPLPALRSMFDIHVHGPLELTQRLLPALRANKGRIVNLSSITALVVLPTGAAYGASKLALEGISDGLRRELSPFGCSVSIVQPAFVNTAIFGKVTESINTHVEASEEIMSVYGYFFRPDKRRKDLKQVKKASPPSVTTEAITHALTAPYPKTRYIVANL 302
            ++P+LL+G+ +G++   VLA   Y + +  FRKRFP+P KGGAIVITGASTGIGNHAAQHLA+QGYIVYCTVRKPAD  A++ALGL NLRPIIMD+A   +I+ G + IL EL+ +  PL+GLVNNAG+AQKFPLEFHPL  LRSMFDIHV GPLELTQRLLPA+RANKGRIVNLSSITALV+LPTGAAYGASKLA+EGISDGLRREL  F CSVSIVQPA+VNTAIF KVT+SI+T VE S EIM+ YGYFFR +KR KD   V KASPPSVTT+AITHALT+PYP TRYIVAN+
Sbjct:   15 ITPDLLRGVALGLLGAFVLAIMSYHLTVFIFRKRFPVPPKGGAIVITGASTGIGNHAAQHLARQGYIVYCTVRKPADVEAIQALGLPNLRPIIMDVAQAKSIENGAETILAELSKNNIPLIGLVNNAGVAQKFPLEFHPLTDLRSMFDIHVIGPLELTQRLLPAIRANKGRIVNLSSITALVLLPTGAAYGASKLAVEGISDGLRRELVDFDCSVSIVQPAYVNTAIFKKVTQSIDTKVEVSPEIMTTYGYFFRTEKRIKDRAAVDKASPPSVTTDAITHALTSPYPHTRYIVANV 310
The following BLAST results are available for this feature:
BLAST of NO10G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855521.16.000e-11974.321-acylglycerone phosphate reductase, partial [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00880NO10G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00880.1NO10G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00880.1.cds1NO10G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00880.1.cds2NO10G00880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00880.1 ID=NO10G00880.1|Name=NO10G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ATGGCATCAGCACCTCTGTCTCCAGAGCTCCTCCAGGGAATATGCATGGG
TGTTGTCTTCACCGTAGTCCTTGCCTTTTTCTTTTACCAAGTCCTCCTCC
TCGCATTTCGCAAACGCTTCCCCATCCCGGCCAAGGGCGGGGCCATTGTC
ATCACCGGCGCCAGCACTGGGATTGGCAACCACGCCGCGCAGCACCTGGC
CAAGCAAGGTTACATCGTCTACTGCACTGTGCGTAAACCCGCCGATGCCA
CTGCCCTCGAAGCTTTAGGTCTCAAGAACCTTCGACCCATAATCATGGAC
ATGGCCAGCCCCTCCACAATCGATACCGGCACCAAACAAATCCTTACCGA
GCTTGCCTCCTCTCAAACCCCGCTCGTCGGCCTTGTAAACAACGCAGGGA
TCGCTCAGAAATTCCCACTCGAATTCCACCCCCTCCCCGCGCTTCGGAGC
ATGTTCGATATTCATGTCCATGGCCCCCTCGAGTTGACCCAGCGCCTCCT
CCCTGCCCTGCGCGCCAACAAAGGCCGTATTGTCAATCTGTCGTCGATCA
CAGCCCTCGTCGTCTTGCCTACCGGAGCGGCGTATGGCGCGAGCAAATTG
GCATTGGAAGGGATAAGTGACGGGCTTCGACGAGAGCTCTCTCCATTCGG
GTGTTCGGTTTCTATCGTCCAACCGGCCTTCGTCAACACTGCCATCTTCG
GCAAAGTCACTGAGAGCATAAATACACACGTGGAGGCCTCTGAAGAAATC
ATGTCGGTGTACGGGTACTTCTTTCGCCCCGACAAGCGACGCAAGGACCT
GAAGCAGGTCAAGAAGGCGAGCCCGCCCAGTGTGACGACCGAGGCGATCA
CTCATGCCTTGACGGCGCCCTACCCCAAAACAAGATATATTGTGGCAAAT
TTAGAGGAGGGAGGGGAGGAGAGGGACAGGGAGGTTATGTCGTGGCAAAT
GCAGCAGCCGCAGCGGCAACATCAGCAGCAGCAGCAGCTTTAG
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protein sequence of NO10G00880.1

>NO10G00880.1-protein ID=NO10G00880.1-protein|Name=NO10G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MASAPLSPELLQGICMGVVFTVVLAFFFYQVLLLAFRKRFPIPAKGGAIV
ITGASTGIGNHAAQHLAKQGYIVYCTVRKPADATALEALGLKNLRPIIMD
MASPSTIDTGTKQILTELASSQTPLVGLVNNAGIAQKFPLEFHPLPALRS
MFDIHVHGPLELTQRLLPALRANKGRIVNLSSITALVVLPTGAAYGASKL
ALEGISDGLRRELSPFGCSVSIVQPAFVNTAIFGKVTESINTHVEASEEI
MSVYGYFFRPDKRRKDLKQVKKASPPSVTTEAITHALTAPYPKTRYIVAN
LEEGGEERDREVMSWQMQQPQRQHQQQQQL*
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mRNA from alignment at chr10:279444..280522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00880.1 ID=NO10G00880.1|Name=NO10G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp|location=Sequence derived from alignment at chr10:279444..280522+ (Nannochloropsis oceanica)
ATGGCATCAGCACCTCTGTCTCCAGAGCTCCTCCAGGGAATATGCATGGG
TGTTGTCTTCACCGTAGTCCTTGCCTTTTTCTTTTACCAAGTCCTCCTCC
TCGCATTTCGCAAACGCTTCCCCATCCCGGCCAAGGGCGGGGCCATTGTC
ATCACCGGCGCCAGCACTGGGATTGGCAACCACGCCGCGCAGCACCTGGC
CAAGCAAGGTTACATCGTCTACTGCACTGTGCGTAAACCCGCCGATGCCA
CTGCCCTCGAAGCTTTAGGTCTCAAGAACCTTCGACCCATAATCATGGAC
ATGGCCAGCCCCTCCACAATCGATACCGGCACCAAACAAATCCTTACCGA
GCTTGCCTCCTCTCAAACCCCGCTCGTCGGCCTTGTAAACAACGCAGGGA
TCGCTCAGAAATTCCCACTCGAATTCCACCCCCTCCCCGCGCTTCGGAGC
ATGTTCGATATTCATGTCCATGGCCCCCTCGAGTTGACCCAGCGCCTCCT
CCCTGCCCTGCGCGCCAACAAAGGCCGTATTGTCAATCTGTCGTCGATCA
CAGCCCTCGTCGTCTTGCCTACCGGAGCGGCGTATGGCGCGAGCAAATTG
GCATTGGAAGGGATAAGTGACGGGCTTCGACGAGAGCTCTCTCCATTCGG
GTGTTCGGTTTCTATCGTCCAACCGGCCTTCGTCAACACTGCCATCTTCG
GCAAAGTCACTGAGAGCATAAATACACACGTGGAGGCCTCTGAAGAAATC
ATGTCGGTGTACGGGTACTTCTTTCGCCCCGACAAGCGACGCAAGGACCT
GAAGCAGGTCAAGAAGGCGAGCCCGCCCAGTGTGACGACCGAGGCGATCA
CTCATGCCTTGACGGCGCCCTACCCCAAAACAAGATATATTGTGGCAAAT
GTGAGTGGGATTTCGGCATTTTGGTTGGGGTGGCTGGTGTGGTTTTGTCC
CGATCGGCTTGCTGACTTTATCATGACATTCTTCAGTTAGAGGAGGGAGG
GGAGGAGAGGGACAGGGAGGTTATGTCGTGGCAAATGCAGCAGCCGCAGC
GGCAACATCAGCAGCAGCAGCAGCTTTAG
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Coding sequence (CDS) from alignment at chr10:279444..280522+

>NO10G00880.1 ID=NO10G00880.1|Name=NO10G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at chr10:279444..280522+ (Nannochloropsis oceanica)
ATGGCATCAGCACCTCTGTCTCCAGAGCTCCTCCAGGGAATATGCATGGG
TGTTGTCTTCACCGTAGTCCTTGCCTTTTTCTTTTACCAAGTCCTCCTCC
TCGCATTTCGCAAACGCTTCCCCATCCCGGCCAAGGGCGGGGCCATTGTC
ATCACCGGCGCCAGCACTGGGATTGGCAACCACGCCGCGCAGCACCTGGC
CAAGCAAGGTTACATCGTCTACTGCACTGTGCGTAAACCCGCCGATGCCA
CTGCCCTCGAAGCTTTAGGTCTCAAGAACCTTCGACCCATAATCATGGAC
ATGGCCAGCCCCTCCACAATCGATACCGGCACCAAACAAATCCTTACCGA
GCTTGCCTCCTCTCAAACCCCGCTCGTCGGCCTTGTAAACAACGCAGGGA
TCGCTCAGAAATTCCCACTCGAATTCCACCCCCTCCCCGCGCTTCGGAGC
ATGTTCGATATTCATGTCCATGGCCCCCTCGAGTTGACCCAGCGCCTCCT
CCCTGCCCTGCGCGCCAACAAAGGCCGTATTGTCAATCTGTCGTCGATCA
CAGCCCTCGTCGTCTTGCCTACCGGAGCGGCGTATGGCGCGAGCAAATTG
GCATTGGAAGGGATAAGTGACGGGCTTCGACGAGAGCTCTCTCCATTCGG
GTGTTCGGTTTCTATCGTCCAACCGGCCTTCGTCAACACTGCCATCTTCG
GCAAAGTCACTGAGAGCATAAATACACACGTGGAGGCCTCTGAAGAAATC
ATGTCGGTGTACGGGTACTTCTTTCGCCCCGACAAGCGACGCAAGGACCT
GAAGCAGGTCAAGAAGGCGAGCCCGCCCAGTGTGACGACCGAGGCGATCA
CTCATGCCTTGACGGCGCCCTACCCCAAAACAAGATATATTGTGGCAAAT
TTAGAGGAGGGAGGGGAGGAGAGGGACAGGGAGGTTATGTCGTGGCAAAT
GCAGCAGCCGCAGCGGCAACATCAGCAGCAGCAGCAGCTTTAG
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Synonyms
Publications