NO10G00850.1, NO10G00850.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00850.1
Unique Name	NO10G00850.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	933
Alignment location	chr10:273201..274261 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:273201..274261 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G00850.1 vs.

BLAST of NO10G00850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00850	NO10G00850	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00850.1	NO10G00850.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00850.1.cds1	NO10G00850.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00850.1.cds2	NO10G00850.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:273201..274261-
coding sequence from alignment at chr10:273201..274261-

mRNA sequence

>NO10G00850.1 ID=NO10G00850.1|Name=NO10G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=933bp
ATGGAAGATAGAGGGGGCGGAAGAGGGGGGGGAGCACCGGCACACGCCGC
AGCTCGAGCCACGAAAAGGTGGGCGTGCCCGGTGTGTACGTTTGTCAATG
TGCAAGCGGACGACAGTGTTTCGGCGTGTTGTGATATGTGCGAGACACCT
CGTTCTGCTACCCCTTGGGGCTGTAGTACCTGCACGCTACTGAATCCCGC
TGCGGAGAAGCGGTGCAAAGCCTGCGGGGAGAAGAAAAGGAGGTGGAAGA
AGAATAAGGACCACAAAAGGGGCAAAGACAAGGACGATGAGAAATCCAAG
AGGTGGAGATATGCACAGGATATGGAGAACGAGGAGAAGGGCAACAGTGA
CCTCACTGACTTGGTGTACGAAGACCGAAAGATGCCGGCCCCCGCCCCTC
CTTCTCCTCCTTCTCCCCCCATCTCCACCTCCTCCTCCCCCTCCTTCTCA
GTCTCGACTACGTCACAACCCCTCCGCATCAGCACCAGCAAAATAATGCG
GGAAGCAGCAGCATGGAGGAAGGAGGAAGACGACGACGACAACGAGGACG
ACAACCATTTACGGGCTCGGGAGGCGTTCGCCTTGTCCCTTTTCAATGAG
TTCGTCACTTCCGATGAAGTATGGGGCGCAGGACTTACCAGCAGTAGCAG
TAGCAACAGTAGCGCAAGTGGTGATGTCAAAGGTGGTAATCCTAGGCTAA
CGTGTTTATGTTGCGGGAAAATGCATAGTACTAGACGGATCATGACCATG
CATTTTGTCAGGGACCACATTGATGAGTTCCAGGGCGAGTTGACGCTGGA
GAATGAAGAAGGCCTGCGGGCACTGCGTCTCCAAGCAGATGCACAGCTCG
CCCTGACGTTGCAAGCGAGGGAGATGGAGGGAGAGGAGGAGGAGAAGAAG
GAGAGGGGGGGGAGGATGAGGAGGAGGAGATGA

protein sequence of NO10G00850.1

>NO10G00850.1-protein ID=NO10G00850.1-protein|Name=NO10G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MEDRGGGRGGGAPAHAAARATKRWACPVCTFVNVQADDSVSACCDMCETP
RSATPWGCSTCTLLNPAAEKRCKACGEKKRRWKKNKDHKRGKDKDDEKSK
RWRYAQDMENEEKGNSDLTDLVYEDRKMPAPAPPSPPSPPISTSSSPSFS
VSTTSQPLRISTSKIMREAAAWRKEEDDDDNEDDNHLRAREAFALSLFNE
FVTSDEVWGAGLTSSSSSNSSASGDVKGGNPRLTCLCCGKMHSTRRIMTM
HFVRDHIDEFQGELTLENEEGLRALRLQADAQLALTLQAREMEGEEEEKK
ERGGRMRRRR*

mRNA from alignment at chr10:273201..274261-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00850.1 ID=NO10G00850.1|Name=NO10G00850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1061bp|location=Sequence derived from alignment at chr10:273201..274261- (Nannochloropsis oceanica)
ATGGAAGATAGAGGGGGCGGAAGAGGGGGGGGAGCACCGGCACACGCCGC
AGCTCGAGCCACGAAAAGGTGGGCGTGCCCGGTGTGTACGTTTGTCAATG
TGCAAGCGGACGACAGTGTTTCGGCGTGTTGTGATATGTGCGAGACACCT
CGTTCTGCTACCCCTTGGGGCTGTAGTACCTGCACGCTACTGAATCCCGC
TGCGGAGAAGCGGTGCAAAGCCTGCGGGGAGAAGAAAAGGAGGTGGAAGA
AGAATAAGGACCACAAAAGGGGCAAAGACAAGGACGATGAGAAATCCAAG
AGGTGGAGATATGCACAGGATATGGAGAACGAGGAGAAGGGCAACAGTGA
CCTCACTGACTTGGTGTACGAAGACCGAAAGATGCCGGCCCCCGCCCCTC
CTTCTCCTCCTTCTCCCCCCATCTCCACCTCCTCCTCCCCCTCCTTCTCA
GTCTCGACTACGTCACAACCCCTCCGCATCAGCACCAGCAAAATAATGCG
GGAAGCAGCAGCATGGAGGAAGGAGGAAGACGACGACGACAACGAGGACG
ACAACCATTTACGGGCTCGGGAGGCGTTCGCCTTGTCCCTTTTCAATGAG
TTCGTCACTTCCGATGAAGTATGGGGCGCAGGACTTACCAGCAGTAGCAG
TAGCAACAGTAGCGCAAGTGGTGATGTCAAAGGTGGTAATCCTAGGCTAA
CGTGTTTATGTTGCGGGAAAATGCATAGTACTAGACGGATCATGGTGAGT
GTAAAGGAGGGGGAGAGACGGAGGGGCGGAGGGACGGAGGGACGGAGGGA
CGGAGAACGAAACGCTGAAGAGTGCTATGTTGGTAATTGACTCATGCGAA
TACACACGCGTTGACATACTAGACCATGCATTTTGTCAGGGACCACATTG
ATGAGTTCCAGGGCGAGTTGACGCTGGAGAATGAAGAAGGCCTGCGGGCA
CTGCGTCTCCAAGCAGATGCACAGCTCGCCCTGACGTTGCAAGCGAGGGA
GATGGAGGGAGAGGAGGAGGAGAAGAAGGAGAGGGGGGGGAGGATGAGGA
GGAGGAGATGA

Coding sequence (CDS) from alignment at chr10:273201..274261-

>NO10G00850.1 ID=NO10G00850.1|Name=NO10G00850.1|organism=Nannochloropsis oceanica|type=CDS|length=933bp|location=Sequence derived from alignment at chr10:273201..274261- (Nannochloropsis oceanica)
ATGGAAGATAGAGGGGGCGGAAGAGGGGGGGGAGCACCGGCACACGCCGC
AGCTCGAGCCACGAAAAGGTGGGCGTGCCCGGTGTGTACGTTTGTCAATG
TGCAAGCGGACGACAGTGTTTCGGCGTGTTGTGATATGTGCGAGACACCT
CGTTCTGCTACCCCTTGGGGCTGTAGTACCTGCACGCTACTGAATCCCGC
TGCGGAGAAGCGGTGCAAAGCCTGCGGGGAGAAGAAAAGGAGGTGGAAGA
AGAATAAGGACCACAAAAGGGGCAAAGACAAGGACGATGAGAAATCCAAG
AGGTGGAGATATGCACAGGATATGGAGAACGAGGAGAAGGGCAACAGTGA
CCTCACTGACTTGGTGTACGAAGACCGAAAGATGCCGGCCCCCGCCCCTC
CTTCTCCTCCTTCTCCCCCCATCTCCACCTCCTCCTCCCCCTCCTTCTCA
GTCTCGACTACGTCACAACCCCTCCGCATCAGCACCAGCAAAATAATGCG
GGAAGCAGCAGCATGGAGGAAGGAGGAAGACGACGACGACAACGAGGACG
ACAACCATTTACGGGCTCGGGAGGCGTTCGCCTTGTCCCTTTTCAATGAG
TTCGTCACTTCCGATGAAGTATGGGGCGCAGGACTTACCAGCAGTAGCAG
TAGCAACAGTAGCGCAAGTGGTGATGTCAAAGGTGGTAATCCTAGGCTAA
CGTGTTTATGTTGCGGGAAAATGCATAGTACTAGACGGATCATGACCATG
CATTTTGTCAGGGACCACATTGATGAGTTCCAGGGCGAGTTGACGCTGGA
GAATGAAGAAGGCCTGCGGGCACTGCGTCTCCAAGCAGATGCACAGCTCG
CCCTGACGTTGCAAGCGAGGGAGATGGAGGGAGAGGAGGAGGAGAAGAAG
GAGAGGGGGGGGAGGATGAGGAGGAGGAGATGA

Synonyms

Publications