NO10G00800.1, NO10G00800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00800.1
Unique NameNO10G00800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2103
Alignment locationchr10:263182..265284 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:263182..265284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00800.1 vs.
Match: EWM25303.1 (transcription factor iiib 90 kda subunit [Nannochloropsis gaditana])

HSP 1 Score: 798.9 bits (2062), Expect = 1.200e-227
Identity = 487/695 (70.07%), Postives = 534/695 (76.83%), Query Frame = 0 
Query:    1 MEQILRCPNPDCRGIDLEYSEPDGATICMACHTIVEENAIVSSVEFNENSAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYARDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTLCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTTVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAIYHEKPRTYKDVGRIVRVSPDTIKKRVDEFEKTPISGMMSRDELANMALSEFDISPRMGGGEGGREGAPRLVGEADPPSFTRAVKMKAAEALRKAQALRDEGKDAKGR-GESGKEEEEVTSVNGRESSTSSS--------------SSAAATANS-------SRERGGSMAGARSRKRSRRGGEGEGEEEERGKEDVGPLIREESEG-----GTEEVGLYKELMDQLLDEEEEQANNRAVAADTERAAAQVGINGRINRGGAAGGGAVVTIAAPVVLGAAAVEEIEEKEDEEVAAVVVAEEEKEEEEEVDDTAQYIRSEEEVEKLSKVWHEVHRGYLEKQARKKAEEEAAKKRAEEDFNYRQPGQSNHQKKKAAAAVAAAAAAASVVGAGGSRAAGGMGGGGPARSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDDMDALPPELEAILTQ 669
            MEQILRCPNPDCRG DLEYSEPDGATICMACHTIVEENAIVSSVEFNEN+AGGASTVVGQFVGPEMTKAYSSAGRGRRRFY RDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKT+CVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQT VSQLALRLVASMQRDWIQAGRRPSGICGAALYLSA+YHEKPRTYKDVGRIVRVSPDTIKKRVDEFE+TPISGMMSR+ELA MA+S+F+   R       R+G    +GEADPPSFTRA+KMK      +AQAL++  KD + R G   KE+E + ++  ++SST S               ++AAAT  S        R RG S+A  RS KR RR    E  EE   +ED  PL +EE E      G  + GL+KELMDQLLDEEEE+A   AVA   E AAA     GR   GG  GG         + L  + VE           A++     ++E +E DDTAQYIRS  EVEKLSKVWHEVH+GYLEKQARKKAEEEA KKRAEEDFNYR PGQSN ++K AAAA AA+  + +  GAG     G +   GP RSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDD+DA PPELEA+++Q
Sbjct:   32 MEQILRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTR-------RQGPGSYLGEADPPSFTRALKMK------EAQALQEGKKDFEERNGPGAKEQERLATL--KDSSTPSGPGTVSAAAAAVAAVAAAAATIGSKRGGLCRGRGRGASVATIRSSKRVRR---SEPLEEIAQEED--PLPQEEDEDEEGGVGDFDGGLHKELMDQLLDEEEEKAKKIAVA---EAAAAGCQAPGRQQHGGKKGG--------EIALSESGVE-----------ALIGDGVLQDEAKETDDTAQYIRSNAEVEKLSKVWHEVHKGYLEKQARKKAEEEAVKKRAEEDFNYRPPGQSNQRRKAAAAAAAASVVSGAQQGAG---EGGAITPAGPERSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDDLDAHPPELEAMMSQ 681
The following BLAST results are available for this feature:
BLAST of NO10G00800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25303.11.200e-22770.07transcription factor iiib 90 kda subunit [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00800NO10G00800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00800.1NO10G00800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00800.1.cds1NO10G00800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00800.1 ID=NO10G00800.1|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp
ATGGAGCAGATCCTCCGCTGCCCTAACCCGGACTGCCGAGGCATTGACCT
TGAGTACAGCGAACCCGACGGAGCTACTATCTGCATGGCCTGCCACACCA
TCGTAGAAGAAAATGCCATAGTCTCCTCTGTGGAATTCAATGAGAACAGC
GCGGGAGGTGCCTCCACAGTGGTCGGACAGTTCGTCGGACCTGAAATGAC
TAAGGCCTACAGCTCGGCCGGACGGGGTCGTCGTCGCTTTTATGCACGGG
ATTCCCGCGACACCACCTTAAACAATGGCCGCCGTGCCATCCAGCAGGTC
GTCTCGCAGCTTAGACTCCGTCAAGCATTCGTTGACCGTGCCTGTCGCTT
GTTCCGCACGGCAGTGGAACGGAATTTCGTTCAAGGTCGCAAAACGCTGT
GTGTGGTGGCGGTATGCTTGTATATGGTTTGCCGCGAAGACAACTCTCCA
CATATGCTCATCGACTTTTCTGACGCCGTTCAAATCAATGTCTACGTCCT
CGGGCATGCCTTCCTTAAATTCAAGCAGCTCACCGGCCTTAACCTGGCCG
TCATCGACCCTTCCATCTACATCCATCGATTCGCCGCCCGCCTCGAACTC
GGCTCCGAACAAGAACAAACCACAGTGTCCCAGCTTGCGCTGCGCCTAGT
GGCATCCATGCAACGTGATTGGATCCAAGCCGGTCGTCGTCCCTCCGGTA
TCTGTGGCGCGGCCCTCTACCTCTCGGCGATATACCACGAGAAGCCACGG
ACCTACAAGGACGTGGGAAGAATAGTCCGAGTCTCGCCCGACACAATCAA
AAAACGAGTGGATGAATTTGAAAAAACACCAATATCAGGGATGATGAGTA
GAGACGAGCTTGCAAATATGGCGCTGTCAGAGTTTGATATCTCGCCGCGG
ATGGGAGGGGGGGAGGGAGGGAGGGAGGGAGCACCTCGCTTGGTGGGGGA
GGCGGACCCGCCTTCGTTCACAAGGGCTGTGAAGATGAAGGCAGCGGAGG
CGTTAAGAAAGGCACAAGCGCTGAGGGATGAAGGAAAAGACGCAAAGGGG
AGGGGAGAGAGTGGGAAAGAAGAGGAAGAGGTGACGTCGGTGAATGGGCG
GGAATCGTCCACGTCCTCGTCCTCGTCTGCTGCTGCGACTGCGAACAGTA
GCAGGGAGAGAGGTGGTAGCATGGCTGGGGCTCGGAGCAGGAAGAGATCA
AGAAGAGGGGGAGAGGGTGAGGGGGAAGAGGAGGAAAGGGGAAAGGAGGA
CGTGGGGCCGTTAATTCGGGAGGAGAGTGAGGGAGGGACGGAGGAAGTGG
GGTTATACAAGGAGTTGATGGACCAGCTTTTGGATGAAGAGGAGGAGCAA
GCAAATAATAGGGCTGTGGCAGCAGATACAGAACGAGCAGCAGCTCAGGT
GGGGATCAATGGAAGAATAAATAGAGGAGGAGCAGCAGGAGGAGGAGCAG
TAGTGACGATTGCAGCACCTGTGGTGCTTGGGGCAGCAGCAGTCGAGGAA
ATAGAGGAGAAAGAGGATGAGGAGGTGGCGGCAGTGGTGGTGGCGGAGGA
GGAGAAGGAAGAAGAAGAGGAGGTTGATGACACGGCGCAGTATATCCGCT
CGGAGGAGGAGGTGGAAAAATTGAGCAAAGTCTGGCATGAAGTCCACAGA
GGCTACCTGGAAAAGCAAGCGAGGAAGAAAGCCGAAGAAGAAGCAGCCAA
GAAGCGTGCAGAGGAAGATTTCAATTACCGTCAACCGGGCCAAAGCAACC
ACCAGAAGAAGAAGGCGGCTGCAGCAGTGGCTGCTGCGGCGGCGGCCGCC
TCGGTAGTGGGGGCCGGGGGGAGTCGAGCAGCGGGAGGAATGGGGGGAGG
AGGGCCAGCGCGGTCGCCTGCCGAGATTGCTGTATCAAACCATTTGGCCA
AGAAGCGAATTTCAAAGAAGATTAATTATGAGGCGGTCAAGATGTTGGGG
AATGATGATGATATGGATGCATTGCCGCCTGAATTGGAGGCGATTTTGAC
ACAAGGGAGGGATTAGGGGGGGCCCGGGGAAAGCAGGTAGTGAGGATGGG
GTGTACTTTAGTATATACTGCATGATAAAAGAATTAAAAAAGTAGCGGTC
AAT
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protein sequence of NO10G00800.1

>NO10G00800.1-protein ID=NO10G00800.1-protein|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MEQILRCPNPDCRGIDLEYSEPDGATICMACHTIVEENAIVSSVEFNENS
AGGASTVVGQFVGPEMTKAYSSAGRGRRRFYARDSRDTTLNNGRRAIQQV
VSQLRLRQAFVDRACRLFRTAVERNFVQGRKTLCVVAVCLYMVCREDNSP
HMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLEL
GSEQEQTTVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAIYHEKPR
TYKDVGRIVRVSPDTIKKRVDEFEKTPISGMMSRDELANMALSEFDISPR
MGGGEGGREGAPRLVGEADPPSFTRAVKMKAAEALRKAQALRDEGKDAKG
RGESGKEEEEVTSVNGRESSTSSSSSAAATANSSRERGGSMAGARSRKRS
RRGGEGEGEEEERGKEDVGPLIREESEGGTEEVGLYKELMDQLLDEEEEQ
ANNRAVAADTERAAAQVGINGRINRGGAAGGGAVVTIAAPVVLGAAAVEE
IEEKEDEEVAAVVVAEEEKEEEEEVDDTAQYIRSEEEVEKLSKVWHEVHR
GYLEKQARKKAEEEAAKKRAEEDFNYRQPGQSNHQKKKAAAAVAAAAAAA
SVVGAGGSRAAGGMGGGGPARSPAEIAVSNHLAKKRISKKINYEAVKMLG
NDDDMDALPPELEAILTQGRD*
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mRNA from alignment at chr10:263182..265284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00800.1 ID=NO10G00800.1|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr10:263182..265284+ (Nannochloropsis oceanica)
ATGGAGCAGATCCTCCGCTGCCCTAACCCGGACTGCCGAGGCATTGACCT
TGAGTACAGCGAACCCGACGGAGCTACTATCTGCATGGCCTGCCACACCA
TCGTAGAAGAAAATGCCATAGTCTCCTCTGTGGAATTCAATGAGAACAGC
GCGGGAGGTGCCTCCACAGTGGTCGGACAGTTCGTCGGACCTGAAATGAC
TAAGGCCTACAGCTCGGCCGGACGGGGTCGTCGTCGCTTTTATGCACGGG
ATTCCCGCGACACCACCTTAAACAATGGCCGCCGTGCCATCCAGCAGGTC
GTCTCGCAGCTTAGACTCCGTCAAGCATTCGTTGACCGTGCCTGTCGCTT
GTTCCGCACGGCAGTGGAACGGAATTTCGTTCAAGGTCGCAAAACGCTGT
GTGTGGTGGCGGTATGCTTGTATATGGTTTGCCGCGAAGACAACTCTCCA
CATATGCTCATCGACTTTTCTGACGCCGTTCAAATCAATGTCTACGTCCT
CGGGCATGCCTTCCTTAAATTCAAGCAGCTCACCGGCCTTAACCTGGCCG
TCATCGACCCTTCCATCTACATCCATCGATTCGCCGCCCGCCTCGAACTC
GGCTCCGAACAAGAACAAACCACAGTGTCCCAGCTTGCGCTGCGCCTAGT
GGCATCCATGCAACGTGATTGGATCCAAGCCGGTCGTCGTCCCTCCGGTA
TCTGTGGCGCGGCCCTCTACCTCTCGGCGATATACCACGAGAAGCCACGG
ACCTACAAGGACGTGGGAAGAATAGTCCGAGTCTCGCCCGACACAATCAA
AAAACGAGTGGATGAATTTGAAAAAACACCAATATCAGGGATGATGAGTA
GAGACGAGCTTGCAAATATGGCGCTGTCAGAGTTTGATATCTCGCCGCGG
ATGGGAGGGGGGGAGGGAGGGAGGGAGGGAGCACCTCGCTTGGTGGGGGA
GGCGGACCCGCCTTCGTTCACAAGGGCTGTGAAGATGAAGGCAGCGGAGG
CGTTAAGAAAGGCACAAGCGCTGAGGGATGAAGGAAAAGACGCAAAGGGG
AGGGGAGAGAGTGGGAAAGAAGAGGAAGAGGTGACGTCGGTGAATGGGCG
GGAATCGTCCACGTCCTCGTCCTCGTCTGCTGCTGCGACTGCGAACAGTA
GCAGGGAGAGAGGTGGTAGCATGGCTGGGGCTCGGAGCAGGAAGAGATCA
AGAAGAGGGGGAGAGGGTGAGGGGGAAGAGGAGGAAAGGGGAAAGGAGGA
CGTGGGGCCGTTAATTCGGGAGGAGAGTGAGGGAGGGACGGAGGAAGTGG
GGTTATACAAGGAGTTGATGGACCAGCTTTTGGATGAAGAGGAGGAGCAA
GCAAATAATAGGGCTGTGGCAGCAGATACAGAACGAGCAGCAGCTCAGGT
GGGGATCAATGGAAGAATAAATAGAGGAGGAGCAGCAGGAGGAGGAGCAG
TAGTGACGATTGCAGCACCTGTGGTGCTTGGGGCAGCAGCAGTCGAGGAA
ATAGAGGAGAAAGAGGATGAGGAGGTGGCGGCAGTGGTGGTGGCGGAGGA
GGAGAAGGAAGAAGAAGAGGAGGTTGATGACACGGCGCAGTATATCCGCT
CGGAGGAGGAGGTGGAAAAATTGAGCAAAGTCTGGCATGAAGTCCACAGA
GGCTACCTGGAAAAGCAAGCGAGGAAGAAAGCCGAAGAAGAAGCAGCCAA
GAAGCGTGCAGAGGAAGATTTCAATTACCGTCAACCGGGCCAAAGCAACC
ACCAGAAGAAGAAGGCGGCTGCAGCAGTGGCTGCTGCGGCGGCGGCCGCC
TCGGTAGTGGGGGCCGGGGGGAGTCGAGCAGCGGGAGGAATGGGGGGAGG
AGGGCCAGCGCGGTCGCCTGCCGAGATTGCTGTATCAAACCATTTGGCCA
AGAAGCGAATTTCAAAGAAGATTAATTATGAGGCGGTCAAGATGTTGGGG
AATGATGATGATATGGATGCATTGCCGCCTGAATTGGAGGCGATTTTGAC
ACAAGGGAGGGATTAGGGGGGGCCCGGGGAAAGCAGGTAGTGAGGATGGG
GTGTACTTTAGTATATACTGCATGATAAAAGAATTAAAAAAGTAGCGGTC
AAT
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Coding sequence (CDS) from alignment at chr10:263182..265284+

>NO10G00800.1 ID=NO10G00800.1|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr10:263182..265284+ (Nannochloropsis oceanica)
ATGGAGCAGATCCTCCGCTGCCCTAACCCGGACTGCCGAGGCATTGACCT
TGAGTACAGCGAACCCGACGGAGCTACTATCTGCATGGCCTGCCACACCA
TCGTAGAAGAAAATGCCATAGTCTCCTCTGTGGAATTCAATGAGAACAGC
GCGGGAGGTGCCTCCACAGTGGTCGGACAGTTCGTCGGACCTGAAATGAC
TAAGGCCTACAGCTCGGCCGGACGGGGTCGTCGTCGCTTTTATGCACGGG
ATTCCCGCGACACCACCTTAAACAATGGCCGCCGTGCCATCCAGCAGGTC
GTCTCGCAGCTTAGACTCCGTCAAGCATTCGTTGACCGTGCCTGTCGCTT
GTTCCGCACGGCAGTGGAACGGAATTTCGTTCAAGGTCGCAAAACGCTGT
GTGTGGTGGCGGTATGCTTGTATATGGTTTGCCGCGAAGACAACTCTCCA
CATATGCTCATCGACTTTTCTGACGCCGTTCAAATCAATGTCTACGTCCT
CGGGCATGCCTTCCTTAAATTCAAGCAGCTCACCGGCCTTAACCTGGCCG
TCATCGACCCTTCCATCTACATCCATCGATTCGCCGCCCGCCTCGAACTC
GGCTCCGAACAAGAACAAACCACAGTGTCCCAGCTTGCGCTGCGCCTAGT
GGCATCCATGCAACGTGATTGGATCCAAGCCGGTCGTCGTCCCTCCGGTA
TCTGTGGCGCGGCCCTCTACCTCTCGGCGATATACCACGAGAAGCCACGG
ACCTACAAGGACGTGGGAAGAATAGTCCGAGTCTCGCCCGACACAATCAA
AAAACGAGTGGATGAATTTGAAAAAACACCAATATCAGGGATGATGAGTA
GAGACGAGCTTGCAAATATGGCGCTGTCAGAGTTTGATATCTCGCCGCGG
ATGGGAGGGGGGGAGGGAGGGAGGGAGGGAGCACCTCGCTTGGTGGGGGA
GGCGGACCCGCCTTCGTTCACAAGGGCTGTGAAGATGAAGGCAGCGGAGG
CGTTAAGAAAGGCACAAGCGCTGAGGGATGAAGGAAAAGACGCAAAGGGG
AGGGGAGAGAGTGGGAAAGAAGAGGAAGAGGTGACGTCGGTGAATGGGCG
GGAATCGTCCACGTCCTCGTCCTCGTCTGCTGCTGCGACTGCGAACAGTA
GCAGGGAGAGAGGTGGTAGCATGGCTGGGGCTCGGAGCAGGAAGAGATCA
AGAAGAGGGGGAGAGGGTGAGGGGGAAGAGGAGGAAAGGGGAAAGGAGGA
CGTGGGGCCGTTAATTCGGGAGGAGAGTGAGGGAGGGACGGAGGAAGTGG
GGTTATACAAGGAGTTGATGGACCAGCTTTTGGATGAAGAGGAGGAGCAA
GCAAATAATAGGGCTGTGGCAGCAGATACAGAACGAGCAGCAGCTCAGGT
GGGGATCAATGGAAGAATAAATAGAGGAGGAGCAGCAGGAGGAGGAGCAG
TAGTGACGATTGCAGCACCTGTGGTGCTTGGGGCAGCAGCAGTCGAGGAA
ATAGAGGAGAAAGAGGATGAGGAGGTGGCGGCAGTGGTGGTGGCGGAGGA
GGAGAAGGAAGAAGAAGAGGAGGTTGATGACACGGCGCAGTATATCCGCT
CGGAGGAGGAGGTGGAAAAATTGAGCAAAGTCTGGCATGAAGTCCACAGA
GGCTACCTGGAAAAGCAAGCGAGGAAGAAAGCCGAAGAAGAAGCAGCCAA
GAAGCGTGCAGAGGAAGATTTCAATTACCGTCAACCGGGCCAAAGCAACC
ACCAGAAGAAGAAGGCGGCTGCAGCAGTGGCTGCTGCGGCGGCGGCCGCC
TCGGTAGTGGGGGCCGGGGGGAGTCGAGCAGCGGGAGGAATGGGGGGAGG
AGGGCCAGCGCGGTCGCCTGCCGAGATTGCTGTATCAAACCATTTGGCCA
AGAAGCGAATTTCAAAGAAGATTAATTATGAGGCGGTCAAGATGTTGGGG
AATGATGATGATATGGATGCATTGCCGCCTGAATTGGAGGCGATTTTGAC
ACAAGGGAGGGATTAG
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Synonyms
Publications