NO10G00780.1, NO10G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00780.1
Unique NameNO10G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2037
Alignment locationchr10:256678..259123 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:256678..259123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00780.1 vs.
Match: EWM22815.1 (hypothetical protein Naga_100437g2 [Nannochloropsis gaditana])

HSP 1 Score: 125.9 bits (315), Expect = 4.600e-25
Identity = 86/279 (30.82%), Postives = 131/279 (46.95%), Query Frame = 0 
Query:  406 RSQIMTFGKALGEPRYRTTSAWQEGLSMVYEITDAMDNRRLFYGTGPIHVAVGQN---VILRLAGPQRHEVSEPFSAADRDPGLERFGSVRDFFKGCHGGQ--YPTNLRVRVVICDHRTGRMALLYHSGKTAKRHAKVPNASYWQDFLPEESLYIWDPDAVFF---GTEGQVKLAAAFYVVACDDSGAAAPPGGGGEASDAGVDAGAVGGEEQGVEGGVEGGMEGGVEGGVEGGVEEKQKMYRVAGGDTERYASHSSFVSLDFTTTDGEAVGRFIKGLL 677
            R   + + + L  P       W   + + +EI D  D+ RLF  +GP+ V          LRL G +R EV  PFSA  RDP  +RF ++  +   CH  +  +P  LRVRVV  D RTG  AL+Y+S    KR  K    ++W+ FLP  SL++W+  + +    GT+  V+++ +FYV     S  ++              A + G  E+  +G +      G             + + + GGD   YA+H+SFV++ F T D     R+IKG L
Sbjct:  318 RQAFLRYARCLALPVVGDGEEWHAHVLLSFEIYDVQDSMRLFVASGPLEVIQSTESGLTALRLTGTKRSEVCRPFSAKSRDPVNKRFENISAYL--CHSWRPDFPVGLRVRVVATDARTGTQALIYNSEPKTKRSVKDSTLNFWRRFLPRHSLFVWEAWSRWVLQNGTQEAVEISTSFYVSPVQKSPVSS--------------ASSTGSAEEREDGWMHFPSATGT-----SRQRALDQPHVIMGGDETAYANHNSFVAVQFRTLDASVPARYIKGAL 575
The following BLAST results are available for this feature:
BLAST of NO10G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22815.14.600e-2530.82hypothetical protein Naga_100437g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00780NO10G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00780.1NO10G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00780.1.cds1NO10G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00780.1.cds2NO10G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00780.1.cds3NO10G00780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00780.1.cds4NO10G00780.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00780.1 ID=NO10G00780.1|Name=NO10G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2037bp
ATGAATAACGAGGAGATGAAAACGAATGCCACCAGCAGCCCGGCAGTAAT
CAGCAGCATCGGTAGCAACCATGTCAGCAGCAGTGTAGCGGCCGCCGCCA
AATCTGCGGCCGCCATGGTAGCGACATCGAAAGCCTTGGCTGCTCGAGAG
CTCTTGCGCCTAGCTCAGCAGATTGTTGCGGGAAGCGGCACGGAGCTCCG
AGCACTGCTGGAGGAGGAAACGCGGGCCTACGACAACAGCAGCAGTAGCA
ACAGTAGCAACAGTAGCGGCAGTACATGTTCCAGCAGGAGCAGCACTCCT
ACCTGCAGCAGCAGCAGTGGCAGCGACAGTACCAGCGGCGGTTGCTCGGC
TGAGATTGATGGGCTTGTAAACTCGCTTTGTGGCTTGCTGGTCGAGCCAG
GGGAAGGTGGAGGGGGAGAAGAAGGAGATGGAACTGGAGGAGATATTCGA
ATGGGTGGCGAGAAAGACTTAATGACGACGATGACGGCCATGGACAGTGG
TAATTGCATGCCTTCTCTCTCGTCTTCGTGCCATCAAACGCATCGTCCGG
CTGGCGGAAACGGGATAGAGATGAAGGCCCAGGAGGGAAGAGGATCCGAA
TACTGTTCCTTCCCTCCCCTCATCTTCCCGCGCAGCTGCAGTCATCATAG
CAGCAGGTTTAGGGGTCTGATTCCAGGTCCCGCGGGAGATGGAGGGGGAG
GGCTCTGCAGTAGCGGCAGCGTCTACAGCTGTAGTGCAGTGCCGACGATG
GCGATGACAGGAGTAAGGGGGGAAGGAGGGGGATTAAGCGCAGAATCGGT
GGTGCTGCACGATAGTGCCTTAATGCAAGAGCATCGACTTGTTTCCGGCT
TTGCCTGGAGCGGGGGTTGCGTGGTTGGGGGGGGGGGGGGTGAAAAGGGG
GGAGGAGGAGGAAGGTGGGGAGGCGGAGGGGCGGCGGGATGGGTGGGGTT
CCGGGCGGGAGCGTTGCAGGGGGGGGAAGGGATGGGTGTGTTGCCGTCGT
CACAGTGGTTGTCGCAGTTGGAGGAGAGGACTACCAGTAGTAATGGTACC
GATTATACTTCCCCCTTGTCCCCTTCTTCTCCGGCGTCTGCCTCTTCTTC
CTTCTTGTCCCACGCCGCCCGTGCTCCTGCTGCTGCTACTACAGCTGCTG
CCGCAGCGGCGGCGGCTGCAGCGAGTCCGTCTGCAGCCTCCACCGCCTTC
CTCCGCGTCGATTGTCGCTCCCAAATCATGACGTTCGGGAAAGCTTTGGG
TGAGCCTCGCTATCGCACGACCAGTGCTTGGCAAGAGGGCTTGAGCATGG
TGTACGAGATCACCGACGCGATGGACAACCGTCGCTTGTTCTATGGAACT
GGCCCCATCCATGTGGCGGTTGGTCAGAACGTCATCTTGCGTCTTGCGGG
GCCTCAACGTCACGAAGTGAGCGAGCCTTTCTCTGCTGCCGACCGTGATC
CAGGCCTGGAGAGGTTTGGAAGTGTGAGGGATTTTTTCAAGGGGTGTCAT
GGAGGGCAATACCCGACAAACCTGCGTGTGAGGGTGGTGATTTGCGACCA
CCGGACGGGACGTATGGCACTGCTTTATCACTCGGGAAAGACGGCGAAAC
GACACGCCAAGGTACCCAACGCCTCCTATTGGCAAGACTTTCTCCCGGAA
GAGTCTCTCTATATCTGGGATCCAGACGCGGTGTTCTTCGGGACTGAGGG
GCAGGTTAAATTAGCAGCGGCCTTCTACGTGGTAGCATGCGATGATAGCG
GCGCTGCTGCTCCACCAGGAGGAGGAGGAGAAGCATCAGATGCAGGTGTA
GACGCAGGAGCGGTTGGAGGGGAGGAACAAGGGGTGGAAGGAGGGGTGGA
AGGAGGGATGGAAGGAGGGGTGGAGGGAGGGGTGGAAGGTGGGGTGGAGG
AGAAGCAGAAGATGTACCGGGTCGCGGGCGGGGATACTGAGCGGTATGCA
AGTCATTCGTCATTCGTGAGTTTAGATTTCACCACCACAGATGGGGAGGC
AGTGGGACGATTCATCAAGGGCTTATTGGCGCCGTAG
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protein sequence of NO10G00780.1

>NO10G00780.1-protein ID=NO10G00780.1-protein|Name=NO10G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=679bp
MNNEEMKTNATSSPAVISSIGSNHVSSSVAAAAKSAAAMVATSKALAARE
LLRLAQQIVAGSGTELRALLEEETRAYDNSSSSNSSNSSGSTCSSRSSTP
TCSSSSGSDSTSGGCSAEIDGLVNSLCGLLVEPGEGGGGEEGDGTGGDIR
MGGEKDLMTTMTAMDSGNCMPSLSSSCHQTHRPAGGNGIEMKAQEGRGSE
YCSFPPLIFPRSCSHHSSRFRGLIPGPAGDGGGGLCSSGSVYSCSAVPTM
AMTGVRGEGGGLSAESVVLHDSALMQEHRLVSGFAWSGGCVVGGGGGEKG
GGGGRWGGGGAAGWVGFRAGALQGGEGMGVLPSSQWLSQLEERTTSSNGT
DYTSPLSPSSPASASSSFLSHAARAPAAATTAAAAAAAAAASPSAASTAF
LRVDCRSQIMTFGKALGEPRYRTTSAWQEGLSMVYEITDAMDNRRLFYGT
GPIHVAVGQNVILRLAGPQRHEVSEPFSAADRDPGLERFGSVRDFFKGCH
GGQYPTNLRVRVVICDHRTGRMALLYHSGKTAKRHAKVPNASYWQDFLPE
ESLYIWDPDAVFFGTEGQVKLAAAFYVVACDDSGAAAPPGGGGEASDAGV
DAGAVGGEEQGVEGGVEGGMEGGVEGGVEGGVEEKQKMYRVAGGDTERYA
SHSSFVSLDFTTTDGEAVGRFIKGLLAP*
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mRNA from alignment at chr10:256678..259123+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00780.1 ID=NO10G00780.1|Name=NO10G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp|location=Sequence derived from alignment at chr10:256678..259123+ (Nannochloropsis oceanica)
ATGAATAACGAGGAGATGAAAACGAATGCCACCAGCAGCCCGGCAGTAAT
CAGCAGCATCGGTAGCAACCATGTCAGCAGCAGTGTAGCGGCCGCCGCCA
AATCTGCGGCCGCCATGGTAGCGACATCGAAAGCCTTGGCTGCTCGAGAG
GTGAGGGAATGATGGAGGAGGGGGAGGGATGGAGGGGCAGAGGGCCAAGC
TCAAAACATGTTTGTGTCAGCATGATATCCCAGATTACATGTTTGGATGT
TACTTTGTCCGGCACTCATTTTCTGCCTCTACTTTTTTTTCTGGACCAAC
AAAACAGCTCTTGCGCCTAGCTCAGCAGATTGTTGCGGGAAGCGGCACGG
AGCTCCGAGCACTGCTGGAGGAGGAAACGCGGGCCTACGACAACAGCAGC
AGTAGCAACAGTAGCAACAGTAGCGGCAGTACATGTTCCAGCAGGAGCAG
CACTCCTACCTGCAGCAGCAGCAGTGGCAGCGACAGTACCAGCGGCGGTT
GCTCGGCTGAGATTGATGGGCTTGTAAACTCGCTTTGTGGCTTGCTGGTC
GAGCCAGGGGAAGGTGGAGGGGGAGAAGAAGGAGATGGAACTGGAGGAGA
TATTCGAATGGGTGGCGAGAAAGACTTAATGACGACGATGACGGCCATGG
ACAGTGGTAATTGCATGCCTTCTCTCTCGTCTTCGTGCCATCAAACGCAT
CGTCCGGCTGGCGGAAACGGGATAGAGATGAAGGCCCAGGAGGGAAGAGG
ATCCGAATACTGTTCCTTCCCTCCCCTCATCTTCCCGCGCAGCTGCAGTC
ATCATAGCAGCAGGTTTAGGGGTCTGATTCCAGGTCCCGCGGGAGATGGA
GGGGGAGGGCTCTGCAGTAGCGGCAGCGTCTACAGCTGTAGTGCAGTGCC
GACGATGGCGATGACAGGAGTAAGGGGGGAAGGAGGGGGATTAAGCGCAG
AATCGGTGGTGCTGCACGATAGTGCCTTAATGCAAGAGGTGTGGCACTAT
GTGGTGGAGGGGAGGGCGGGAGGGAGAGTTCAATTGGGAGTCCTGGCGTT
GGTGAGCAAGGGTTGGAAAGAAATGGCGGCAAGTGATGCCTTCTGGCGGC
CGATCAGCATCGACTTGTTTCCGGCTTTGCCTGGAGCGGGGGTTGCGTGG
TTGGGGGGGGGGGGGGTGAAAAGGGGGGAGGAGGAGGAAGGTGGGGAGGC
GGAGGGGCGGCGGGATGGGTGGGGTTCCGGGCGGGAGCGTTGCAGGGGGG
GGAAGGGATGGGTGTGTTGCCGTCGTCACAGTGGTTGTCGCAGTTGGAGG
AGAGGACTACCAGTAGTAATGGTACCGATTATACTTCCCCCTTGTCCCCT
TCTTCTCCGGCGTCTGCCTCTTCTTCCTTCTTGTCCCACGCCGCCCGTGC
TCCTGCTGCTGCTACTACAGCTGCTGCCGCAGCGGCGGCGGCTGCAGCGA
GTCCGTCTGCAGCCTCCACCGCCTTCCTCCGCGTCGATTGTCGCTCCCAA
ATCATGACGTTCGGGAAAGCTTTGGGTGAGCCTCGCTATCGCACGACCAG
TGCTTGGCAAGAGGGCTTGAGCATGGTGTACGAGATCACCGACGCGATGG
ACAACCGTCGCTTGTTCTATGGAACTGGCCCCATCCATGTGGCGGTTGGT
CAGAACGTCATCTTGCGTCTTGCGGGGCCTCAACGTCACGAAGTGAGCGA
GCCTTTCTCTGCTGCCGACCGTGATCCAGGCCTGGAGAGGTTTGGAAGTG
TGAGGGATTTTTTCAAGGGGTGTCATGGAGGGCAATACCCGACAAACCTG
CGTGTGAGGGTGGTGATTTGCGACCACCGGACGGGACGTATGGCACTGCT
TTATCACTCGGGAAAGACGGCGAAACGACACGCCAAGGTACGTCTTTCTT
CCCCTTCCGTCTTTCCAACTCTCCCTCCCTCCCTCCCTCCTTTCATCGTG
CACACGTCATATGCCACATATACTTATTCACCTACCTTTCCTTTCCCCCC
TCCCTCCCTCCCTGCCTCAGGTACCCAACGCCTCCTATTGGCAAGACTTT
CTCCCGGAAGAGTCTCTCTATATCTGGGATCCAGACGCGGTGTTCTTCGG
GACTGAGGGGCAGGTTAAATTAGCAGCGGCCTTCTACGTGGTAGCATGCG
ATGATAGCGGCGCTGCTGCTCCACCAGGAGGAGGAGGAGAAGCATCAGAT
GCAGGTGTAGACGCAGGAGCGGTTGGAGGGGAGGAACAAGGGGTGGAAGG
AGGGGTGGAAGGAGGGATGGAAGGAGGGGTGGAGGGAGGGGTGGAAGGTG
GGGTGGAGGAGAAGCAGAAGATGTACCGGGTCGCGGGCGGGGATACTGAG
CGGTATGCAAGTCATTCGTCATTCGTGAGTTTAGATTTCACCACCACAGA
TGGGGAGGCAGTGGGACGATTCATCAAGGGCTTATTGGCGCCGTAG
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Coding sequence (CDS) from alignment at chr10:256678..259123+

>NO10G00780.1 ID=NO10G00780.1|Name=NO10G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=2037bp|location=Sequence derived from alignment at chr10:256678..259123+ (Nannochloropsis oceanica)
ATGAATAACGAGGAGATGAAAACGAATGCCACCAGCAGCCCGGCAGTAAT
CAGCAGCATCGGTAGCAACCATGTCAGCAGCAGTGTAGCGGCCGCCGCCA
AATCTGCGGCCGCCATGGTAGCGACATCGAAAGCCTTGGCTGCTCGAGAG
CTCTTGCGCCTAGCTCAGCAGATTGTTGCGGGAAGCGGCACGGAGCTCCG
AGCACTGCTGGAGGAGGAAACGCGGGCCTACGACAACAGCAGCAGTAGCA
ACAGTAGCAACAGTAGCGGCAGTACATGTTCCAGCAGGAGCAGCACTCCT
ACCTGCAGCAGCAGCAGTGGCAGCGACAGTACCAGCGGCGGTTGCTCGGC
TGAGATTGATGGGCTTGTAAACTCGCTTTGTGGCTTGCTGGTCGAGCCAG
GGGAAGGTGGAGGGGGAGAAGAAGGAGATGGAACTGGAGGAGATATTCGA
ATGGGTGGCGAGAAAGACTTAATGACGACGATGACGGCCATGGACAGTGG
TAATTGCATGCCTTCTCTCTCGTCTTCGTGCCATCAAACGCATCGTCCGG
CTGGCGGAAACGGGATAGAGATGAAGGCCCAGGAGGGAAGAGGATCCGAA
TACTGTTCCTTCCCTCCCCTCATCTTCCCGCGCAGCTGCAGTCATCATAG
CAGCAGGTTTAGGGGTCTGATTCCAGGTCCCGCGGGAGATGGAGGGGGAG
GGCTCTGCAGTAGCGGCAGCGTCTACAGCTGTAGTGCAGTGCCGACGATG
GCGATGACAGGAGTAAGGGGGGAAGGAGGGGGATTAAGCGCAGAATCGGT
GGTGCTGCACGATAGTGCCTTAATGCAAGAGCATCGACTTGTTTCCGGCT
TTGCCTGGAGCGGGGGTTGCGTGGTTGGGGGGGGGGGGGGTGAAAAGGGG
GGAGGAGGAGGAAGGTGGGGAGGCGGAGGGGCGGCGGGATGGGTGGGGTT
CCGGGCGGGAGCGTTGCAGGGGGGGGAAGGGATGGGTGTGTTGCCGTCGT
CACAGTGGTTGTCGCAGTTGGAGGAGAGGACTACCAGTAGTAATGGTACC
GATTATACTTCCCCCTTGTCCCCTTCTTCTCCGGCGTCTGCCTCTTCTTC
CTTCTTGTCCCACGCCGCCCGTGCTCCTGCTGCTGCTACTACAGCTGCTG
CCGCAGCGGCGGCGGCTGCAGCGAGTCCGTCTGCAGCCTCCACCGCCTTC
CTCCGCGTCGATTGTCGCTCCCAAATCATGACGTTCGGGAAAGCTTTGGG
TGAGCCTCGCTATCGCACGACCAGTGCTTGGCAAGAGGGCTTGAGCATGG
TGTACGAGATCACCGACGCGATGGACAACCGTCGCTTGTTCTATGGAACT
GGCCCCATCCATGTGGCGGTTGGTCAGAACGTCATCTTGCGTCTTGCGGG
GCCTCAACGTCACGAAGTGAGCGAGCCTTTCTCTGCTGCCGACCGTGATC
CAGGCCTGGAGAGGTTTGGAAGTGTGAGGGATTTTTTCAAGGGGTGTCAT
GGAGGGCAATACCCGACAAACCTGCGTGTGAGGGTGGTGATTTGCGACCA
CCGGACGGGACGTATGGCACTGCTTTATCACTCGGGAAAGACGGCGAAAC
GACACGCCAAGGTACCCAACGCCTCCTATTGGCAAGACTTTCTCCCGGAA
GAGTCTCTCTATATCTGGGATCCAGACGCGGTGTTCTTCGGGACTGAGGG
GCAGGTTAAATTAGCAGCGGCCTTCTACGTGGTAGCATGCGATGATAGCG
GCGCTGCTGCTCCACCAGGAGGAGGAGGAGAAGCATCAGATGCAGGTGTA
GACGCAGGAGCGGTTGGAGGGGAGGAACAAGGGGTGGAAGGAGGGGTGGA
AGGAGGGATGGAAGGAGGGGTGGAGGGAGGGGTGGAAGGTGGGGTGGAGG
AGAAGCAGAAGATGTACCGGGTCGCGGGCGGGGATACTGAGCGGTATGCA
AGTCATTCGTCATTCGTGAGTTTAGATTTCACCACCACAGATGGGGAGGC
AGTGGGACGATTCATCAAGGGCTTATTGGCGCCGTAG
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Synonyms
Publications