NO10G00750.1, NO10G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00750.1
Unique NameNO10G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1372
Alignment locationchr10:248195..249691 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:248195..249691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00750.1 vs.
Match: EWM25312.1 (ap2 ethylene-responsive transcription factor ant-like protein [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 7.900e-97
Identity = 189/353 (53.54%), Postives = 241/353 (68.27%), Query Frame = 0 
Query:   52 MGVHWHRANKRWIAEVRHQGTRVLYKSFVDEREAALAVDDMLRQIFGEAILTNFHKATGVFLDPRQAFAMPTDEKEMDDMGGTNSTSNSNSNIPSHNANAGVSFVQALSKYKAVIKQHGRPLLLGLFPTKSQALAAIKEKTAPVGRGGMAAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYDQYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSSNTTNTNTSTRNCSSSSGNGSGSSSSSNTPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNPETAALLYDAAAREHHGARARCNFDEQGMRTNVRIKLNNTAGAMSRYVLRTPYEK 405
            MGV+W+  N RWIAEVRH+  R+L+++F DE EAA A+D +LRQ FGE ILTNFH  +GVFLDP+ AF              T S+S+ + N  +  A   V++V+ L  YKAVIK  GRP L+GLF ++ QA+A IK+KT P  +GGM+ +PKQSRFLG+SWD HHK+W ARL+H+G RVLS+TFKE+ EEEAA VYD YARRYHG+ A VNFD NG FLDPKNR TR+D S+     +                        ++D+RG+SWSKE  KW+AQI+VAGR +NLGY S+ + AAL YD AAR++HG  ARCNFD QG RT VR+KLNN+A A  +Y +R   +K
Sbjct:    1 MGVNWNGKNNRWIAEVRHKKQRLLHRAFSDEEEAAHAIDRVLRQHFGETILTNFHHPSGVFLDPKHAFVTKVS---------TGSSSSCSDNTFTSTATWAVTYVEGLRLYKAVIKLRGRPHLIGLFSSRDQAIAVIKKKTQPREKGGMSKSPKQSRFLGVSWDCHHKKWTARLYHDGTRVLSQTFKEDQEEEAALVYDMYARRYHGDGAFVNFDMNGNFLDPKNRSTRIDASAGVDKDSQ-----------------------NMDFRGVSWSKETNKWYAQIRVAGRTFNLGYFSDVKAAALQYDMAARKYHGTYARCNFDLQGNRTQVRMKLNNSAAAKVKYTVRENSDK 321
The following BLAST results are available for this feature:
BLAST of NO10G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25312.17.900e-9753.54ap2 ethylene-responsive transcription factor ant-l... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00750NO10G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00750.1NO10G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00750.1.cds1NO10G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00750.1.cds2NO10G00750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00750.1 ID=NO10G00750.1|Name=NO10G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1372bp
TTTTACCAACAGCTTACCCTTAACATTGATGCAGCAAACTTCATTGCTTC
TCCGGCCGATGCTGCTGTCTTACTGTGGCCGCTGTCGTCGTCTTCGCCCC
GCCACATCTGCCTTCCTCTCGTCCGCTTCGACTTCACAACCCCGACAAAA
TCAAGACAAATCCACGCGCCACTCGCCCTACATGGGTGTGCACTGGCACC
GCGCTAACAAGCGGTGGATCGCCGAAGTCCGGCATCAGGGCACGCGCGTC
CTCTACAAGTCCTTTGTAGATGAGAGAGAAGCTGCTTTGGCCGTGGATGA
TATGCTGAGACAAATTTTTGGGGAGGCCATCTTGACCAACTTTCACAAAG
CCACCGGCGTGTTCCTCGACCCACGGCAAGCGTTCGCCATGCCGACAGAT
GAGAAAGAAATGGATGACATGGGCGGCACCAACAGCACCAGCAACAGCAA
CAGCAATATCCCATCCCACAATGCTAATGCCGGCGTCTCGTTTGTGCAAG
CCCTGAGCAAATACAAAGCCGTCATTAAACAACACGGCCGTCCCCTCCTC
CTTGGCCTCTTTCCCACCAAAAGCCAAGCATTAGCAGCAATCAAAGAGAA
GACTGCGCCCGTCGGGAGAGGAGGCATGGCGGCCGCCCCCAAACAAAGCC
GGTTTCTGGGCCTATCGTGGGACACTCATCACAAGAGGTGGATGGCAAGA
TTGCATCATGAGGGGATTCGGGTATTGTCTAGGACATTCAAGGAGGAGAT
GGAGGAGGAGGCGGCACGAGTGTATGACCAATATGCGCGCAGGTACCACG
GTGAGGAAGCCTTGGTCAATTTCGATCACAACGGGGTATTTCTCGACCCC
AAGAACCGTGTCACGCGCGTGGATACAAGCAGCAACACCACCAACACCAA
CACCAGTACCAGAAACTGTAGCAGTAGCAGTGGCAATGGCAGTGGCAGTA
GCAGTAGCAGTAACACACCCGGGGACGTCGACTATCGAGGCCTCTCCTGG
TCCAAGGAAATGCAAAAGTGGCACGCCCAGATTCAGGTTGCAGGCCGTGT
GTACAATCTTGGGTACCATTCAAACCCGGAAACGGCTGCTTTGTTGTATG
ATGCCGCCGCTCGTGAGCACCACGGGGCCCGGGCTCGGTGCAATTTTGAT
GAGCAGGGAATGAGGACTAATGTGAGGATTAAACTCAATAACACGGCGGG
GGCAATGTCTCGGTATGTCTTGCGGACGCCATATGAAAAATGAAAAGGGC
GACAAGGTGGGCGACAAGGTGTAGAGTAAGAGAGAAATGAAATTCAAAAT
GTGATCGAAGCATCATTGAGGGATAATGCGAATGACGAGAGGACTCTCAG
AAGCAGTTCCTGATGTTAAAAA
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protein sequence of NO10G00750.1

>NO10G00750.1-protein ID=NO10G00750.1-protein|Name=NO10G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MQQTSLLLRPMLLSYCGRCRRLRPATSAFLSSASTSQPRQNQDKSTRHSP
YMGVHWHRANKRWIAEVRHQGTRVLYKSFVDEREAALAVDDMLRQIFGEA
ILTNFHKATGVFLDPRQAFAMPTDEKEMDDMGGTNSTSNSNSNIPSHNAN
AGVSFVQALSKYKAVIKQHGRPLLLGLFPTKSQALAAIKEKTAPVGRGGM
AAAPKQSRFLGLSWDTHHKRWMARLHHEGIRVLSRTFKEEMEEEAARVYD
QYARRYHGEEALVNFDHNGVFLDPKNRVTRVDTSSNTTNTNTSTRNCSSS
SGNGSGSSSSSNTPGDVDYRGLSWSKEMQKWHAQIQVAGRVYNLGYHSNP
ETAALLYDAAAREHHGARARCNFDEQGMRTNVRIKLNNTAGAMSRYVLRT
PYEK*
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mRNA from alignment at chr10:248195..249691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00750.1 ID=NO10G00750.1|Name=NO10G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at chr10:248195..249691- (Nannochloropsis oceanica)
TTTTACCAACAGCTTACCCTTAACATTGATGCAGCAAACTTCATTGCTTC
TCCGGCCGATGCTGCTGTCTTACTGTGGCCGCTGTCGTCGTCTTCGCCCC
GCCACATCTGCCTTCCTCTCGTCCGCTTCGACTTCACAACCCCGACAAAA
TCAAGACAAATCCACGCGCCACTCGCCCTACATGGGTGTGCACTGGCACC
GCGCTAACAAGCGGTGGATCGCCGAAGTCCGGCATCAGGGCACGCGCGTC
CTCTACAAGTCCTTTGTAGATGAGAGAGAAGCTGCTTTGGCCGTGGATGA
TATGCTGAGACAAATTTTTGGGGAGGCCATCTTGACCAACTTTCACAAAG
CCACCGGCGTGTTCCTCGACCCACGGCAAGCGTTCGCCATGCCGACAGAT
GAGAAAGAAATGGATGACATGGGCGGCACCAACAGCACCAGCAACAGCAA
CAGCAATATCCCATCCCACAATGCTAATGCCGGCGTCTCGTTTGTGCAAG
CCCTGAGCAAATACAAAGCCGTCATTAAACAACACGGCCGTCCCCTCCTC
CTTGGCCTCTTTCCCACCAAAAGCCAAGCATTAGCAGCAATCAAAGAGAA
GACTGCGCCCGTCGGGAGAGGAGGCATGGCGGCCGCCCCCAAACAAAGCC
GGTTTCTGGGCCTATCGTGGGACACTCATCACAAGAGGTGGATGGCAAGA
TTGCATCATGAGGGGATTCGGGTATTGTCTAGGACATTCAAGGAGGAGAT
GGAGGAGGAGGCGGCACGAGTGTATGACCAATATGCGCGCAGGTACACTC
GGAGGGAAGGAGGAGGGAAGGAATGTTGATGGGAGGGATAAGGAGGGGGA
TGGCAAAAGGGACTCACGCCTGCGGCACGCTCCATGAATTCTTTCATTCA
CTCCTTCGTTCATACAGGTACCACGGTGAGGAAGCCTTGGTCAATTTCGA
TCACAACGGGGTATTTCTCGACCCCAAGAACCGTGTCACGCGCGTGGATA
CAAGCAGCAACACCACCAACACCAACACCAGTACCAGAAACTGTAGCAGT
AGCAGTGGCAATGGCAGTGGCAGTAGCAGTAGCAGTAACACACCCGGGGA
CGTCGACTATCGAGGCCTCTCCTGGTCCAAGGAAATGCAAAAGTGGCACG
CCCAGATTCAGGTTGCAGGCCGTGTGTACAATCTTGGGTACCATTCAAAC
CCGGAAACGGCTGCTTTGTTGTATGATGCCGCCGCTCGTGAGCACCACGG
GGCCCGGGCTCGGTGCAATTTTGATGAGCAGGGAATGAGGACTAATGTGA
GGATTAAACTCAATAACACGGCGGGGGCAATGTCTCGGTATGTCTTGCGG
ACGCCATATGAAAAATGAAAAGGGCGACAAGGTGGGCGACAAGGTGTAGA
GTAAGAGAGAAATGAAATTCAAAATGTGATCGAAGCATCATTGAGGGATA
ATGCGAATGACGAGAGGACTCTCAGAAGCAGTTCCTGATGTTAAAAA
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Coding sequence (CDS) from alignment at chr10:248195..249691-

>NO10G00750.1 ID=NO10G00750.1|Name=NO10G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=1215bp|location=Sequence derived from alignment at chr10:248195..249691- (Nannochloropsis oceanica)
ATGCAGCAAACTTCATTGCTTCTCCGGCCGATGCTGCTGTCTTACTGTGG
CCGCTGTCGTCGTCTTCGCCCCGCCACATCTGCCTTCCTCTCGTCCGCTT
CGACTTCACAACCCCGACAAAATCAAGACAAATCCACGCGCCACTCGCCC
TACATGGGTGTGCACTGGCACCGCGCTAACAAGCGGTGGATCGCCGAAGT
CCGGCATCAGGGCACGCGCGTCCTCTACAAGTCCTTTGTAGATGAGAGAG
AAGCTGCTTTGGCCGTGGATGATATGCTGAGACAAATTTTTGGGGAGGCC
ATCTTGACCAACTTTCACAAAGCCACCGGCGTGTTCCTCGACCCACGGCA
AGCGTTCGCCATGCCGACAGATGAGAAAGAAATGGATGACATGGGCGGCA
CCAACAGCACCAGCAACAGCAACAGCAATATCCCATCCCACAATGCTAAT
GCCGGCGTCTCGTTTGTGCAAGCCCTGAGCAAATACAAAGCCGTCATTAA
ACAACACGGCCGTCCCCTCCTCCTTGGCCTCTTTCCCACCAAAAGCCAAG
CATTAGCAGCAATCAAAGAGAAGACTGCGCCCGTCGGGAGAGGAGGCATG
GCGGCCGCCCCCAAACAAAGCCGGTTTCTGGGCCTATCGTGGGACACTCA
TCACAAGAGGTGGATGGCAAGATTGCATCATGAGGGGATTCGGGTATTGT
CTAGGACATTCAAGGAGGAGATGGAGGAGGAGGCGGCACGAGTGTATGAC
CAATATGCGCGCAGGTACCACGGTGAGGAAGCCTTGGTCAATTTCGATCA
CAACGGGGTATTTCTCGACCCCAAGAACCGTGTCACGCGCGTGGATACAA
GCAGCAACACCACCAACACCAACACCAGTACCAGAAACTGTAGCAGTAGC
AGTGGCAATGGCAGTGGCAGTAGCAGTAGCAGTAACACACCCGGGGACGT
CGACTATCGAGGCCTCTCCTGGTCCAAGGAAATGCAAAAGTGGCACGCCC
AGATTCAGGTTGCAGGCCGTGTGTACAATCTTGGGTACCATTCAAACCCG
GAAACGGCTGCTTTGTTGTATGATGCCGCCGCTCGTGAGCACCACGGGGC
CCGGGCTCGGTGCAATTTTGATGAGCAGGGAATGAGGACTAATGTGAGGA
TTAAACTCAATAACACGGCGGGGGCAATGTCTCGGTATGTCTTGCGGACG
CCATATGAAAAATGA
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Synonyms
Publications