|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr10 | genome | chr10:245276..247623 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00740.1 vs.
Match: XP_005853578.1 (phosphoglucomutase [Nannochloropsis gaditana CCMP526]; EKU22782.1 phosphoglucomutase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1057.4 bits (2733), Expect = 1.900e-305 Identity = 525/666 (78.83%), Postives = 576/666 (86.49%), Query Frame = 0
Query: 5 MRSLLTGALISITACWWDGIIAFTIASPPLS----------YTVRPSPTTTTTSTSHSWGWLRPVRGGVSPLSSSS---PLAPPGLNKITALETTPVEGMKPGTSGLRKKVKVVRDGLYLHNFVQALFDTLPPHEKKGATMVVSGDGRYYNREAIQIIIEIAAANGVGRLWIGKGGIMSTPAVSAVIREREGGVAVGGIILTASHNPGGPEEDFGIKYNMGNGEPALEAFTDAVYAATLNIEEVQVLTNCPKVNLDKLGVTRVGDMVVEVIDPVQDYLAVLKEAFDFDLLKAFIARPGGFKLVFDAMHGVAAPYAQVVLGQELGCPPSSFLHPDSKEDFGGLHPDPNLAYASDLVKTMGLLPSGAPVPPSADSEDVPDLGAAADGDADRNMILGKRFFVTPSDSLALIAANAEAIPFFRDQGGLKTVARSMPTSQAVDRVAKAKGLNCVETPTGWKYFGNLMDALALGGKEEYNPILCGEESFGTGSNHVREKDGLWAVLAWLSVLAHHNPEGDAPLKPVSAIVQEHWAAYGRNYYCRYDYETVDADAANAMMAHLRAPDFMPGMTINGFTLTEVDDFAYTDPVDGSQATKQGVRLIFGDGTRAVFRLSGTGSTGATVRMYLEKYEPDVTKQGLPSSEVLKPLADLAIKLARLEEFTGRTAPTVIT 658
M LL G L ++ C W+GI AFTIAS L R S +T + W W VRGG P++SSS P APPG + L TTPVEGMKPGTSGLRKKVKVVRDGLYLHNFVQALFD+LPPHEK+GATMVVSGDGR+YNREAIQIIIEIAAANGVGRLWIGKGGIMSTPAVSAVIREREGG A+GGIILTASHNPGGPEEDFGIKYNM NGEPALE+FTDAVYAATL+IEE+++L N PKV+LD LGVTRVG+MVVEVIDPVQDYL VLK+AFDF+ L+ FIARPGGFKLVFDAMHGVAAPYAQVVLG+ELGCPPS+FLH SKEDFGGLHPDPNLAYASDLVK MGLLPSGAP P + +DVPDLGAAADGDADRNMILGKRFFVTPSDSLALIAANA+AIPFFR+QGGL+TVARSMPTSQAVD+VA+AKGL CVETPTGWKYFGNLMDA ALG ++Y PILCGEESFGTGSNHVREKDG+WAVLAWLS+LA HNP +APLKP+SAIVQEHWA YGRNYYCRYDYETVD+DAANAMMAHLR PDF PG ++GF L EVDDF+Y+DPVDG QA KQGVRL+F DG+RAVFRLSGTGS+GAT+RMYLE+YE DV+KQG+ SSE LKPLAD AIKLA+LE +TGR APTVIT
Sbjct: 2 MGILLKGLLATVMLCRWNGI-AFTIASGRLGGSPKRPWGHCVNTRASIISTVNPEINQWHWFHTVRGGAFPVASSSSPSPPAPPGQSMFKTLRTTPVEGMKPGTSGLRKKVKVVRDGLYLHNFVQALFDSLPPHEKEGATMVVSGDGRHYNREAIQIIIEIAAANGVGRLWIGKGGIMSTPAVSAVIREREGGTAMGGIILTASHNPGGPEEDFGIKYNMQNGEPALESFTDAVYAATLSIEEIKILANAPKVDLDVLGVTRVGEMVVEVIDPVQDYLGVLKDAFDFEALRKFIARPGGFKLVFDAMHGVAAPYAQVVLGKELGCPPSTFLHASSKEDFGGLHPDPNLAYASDLVKVMGLLPSGAPDPSMVEDKDVPDLGAAADGDADRNMILGKRFFVTPSDSLALIAANADAIPFFREQGGLRTVARSMPTSQAVDQVARAKGLTCVETPTGWKYFGNLMDARALGSAQDYVPILCGEESFGTGSNHVREKDGMWAVLAWLSILASHNPNPEAPLKPISAIVQEHWAIYGRNYYCRYDYETVDSDAANAMMAHLREPDFKPGPVLDGFVLAEVDDFSYSDPVDGRQAVKQGVRLLFEDGSRAVFRLSGTGSSGATIRMYLERYEADVSKQGMTSSEALKPLADFAIKLAKLEHYTGRRAPTVIT 666
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00740.1 ID=NO10G00740.1|Name=NO10G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp
CAGATGTTTAAGAAGATGCGTTCCTTGTTGACGGGGGCGCTTATCTCCAT
CACAGCCTGTTGGTGGGATGGCATAATAGCCTTTACCATCGCCTCCCCTC
CCCTATCCTACACTGTCCGCCCCAGTCCAACGACCACCACGACTTCGACA
TCGCATTCGTGGGGCTGGCTACGTCCTGTTCGGGGGGGGGTGTCCCCCCT
TTCCTCATCCTCGCCGCTAGCCCCGCCGGGGCTGAACAAGATCACGGCCT
TGGAGACTACACCGGTGGAAGGAATGAAGCCAGGCACGTCCGGTCTGCGG
AAAAAGGTCAAGGTGGTGCGCGACGGCTTGTACCTGCACAATTTTGTCCA
AGCGCTTTTCGATACTTTGCCACCACACGAGAAGAAGGGTGCTACCATGG
TGGTCTCGGGGGACGGACGGTACTATAACCGCGAGGCCATCCAGATCATC
ATCGAGATCGCCGCAGCCAACGGCGTGGGCCGTTTATGGATCGGTAAAGG
CGGCATCATGTCCACCCCTGCCGTTTCCGCTGTCATTCGTGAAAGAGAAG
GTGGGGTGGCGGTTGGAGGGATCATCCTGACGGCTAGTCATAATCCGGGG
GGGCCGGAGGAGGATTTTGGGATTAAGTACAATATGGGAAATGGCGAACC
GGCATTGGAGGCTTTCACGGATGCTGTTTATGCGGCGACACTGAACATTG
AGGAGGTTCAAGTGCTTACAAATTGCCCAAAGGTAAACTTGGACAAGCTG
GGTGTGACAAGGGTGGGGGATATGGTGGTGGAGGTGATCGATCCCGTGCA
AGATTACTTGGCCGTCCTAAAAGAGGCCTTTGATTTTGACCTACTTAAGG
CCTTCATTGCTCGGCCCGGAGGATTCAAACTCGTCTTTGACGCCATGCAC
GGTGTGGCAGCCCCTTACGCTCAAGTCGTCCTGGGGCAAGAACTTGGATG
CCCTCCCTCTTCCTTCCTCCATCCCGATTCCAAGGAAGACTTTGGCGGTC
TCCATCCGGACCCCAATTTAGCCTATGCCTCTGATCTGGTTAAGACGATG
GGCTTGTTACCCTCTGGTGCACCTGTCCCTCCCTCGGCAGACAGTGAGGA
TGTACCCGACCTGGGGGCAGCTGCTGATGGTGATGCGGATCGGAACATGA
TATTGGGTAAGAGGTTTTTTGTGACCCCGTCGGACTCCCTGGCCCTGATC
GCCGCAAACGCGGAGGCGATCCCTTTTTTTAGGGACCAGGGGGGTTTGAA
AACGGTGGCGAGATCCATGCCCACGAGTCAGGCGGTGGATAGGGTGGCGA
AGGCGAAGGGTTTGAACTGCGTGGAGACACCCACGGGCTGGAAGTATTTT
GGGAATTTGATGGACGCCTTGGCCCTGGGGGGAAAGGAGGAATACAACCC
TATTCTGTGCGGGGAGGAGAGTTTTGGGACAGGCAGTAACCACGTGCGGG
AGAAGGATGGCTTGTGGGCGGTGCTGGCGTGGTTGTCGGTCTTGGCCCAT
CATAACCCCGAGGGAGACGCGCCGCTGAAGCCGGTCAGTGCCATTGTGCA
GGAGCACTGGGCGGCGTATGGAAGGAACTACTACTGCCGGTACGACTACG
AGACTGTGGACGCCGACGCCGCCAATGCCATGATGGCCCATTTGCGGGCC
CCGGATTTCATGCCCGGGATGACTATAAATGGTTTTACCTTGACAGAGGT
GGACGATTTTGCGTACACAGACCCAGTGGATGGGAGCCAGGCGACGAAGC
AGGGGGTGAGGTTGATATTTGGGGATGGGACCAGGGCTGTATTCCGTTTG
TCAGGCACGGGGTCAACGGGAGCGACAGTGAGGATGTACTTGGAGAAGTA
CGAACCGGACGTAACCAAACAGGGCTTACCGAGCTCGGAGGTATTGAAAC
CATTGGCAGATTTGGCTATCAAATTGGCACGATTGGAAGAGTTTACGGGC
CGGACGGCACCAACAGTGATCACGTAAAAAGTCGAAAGGGGTGGGGGGAT
AAGTAGAAGTGTTGTGGTGTTGAAATCAAGTGAAAGAATGAAAAGGTCTG
TTGCATACGAAAGGTCATTGAGCTTATCTGGCCTCGAGCGGTGGGGTCTA
CAGTCGAAGCTCGGTGAAATGTGACCCGGAACGCACGAGAGGGG back to topprotein sequence of NO10G00740.1 >NO10G00740.1-protein ID=NO10G00740.1-protein|Name=NO10G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=658bp
MFKKMRSLLTGALISITACWWDGIIAFTIASPPLSYTVRPSPTTTTTSTS
HSWGWLRPVRGGVSPLSSSSPLAPPGLNKITALETTPVEGMKPGTSGLRK
KVKVVRDGLYLHNFVQALFDTLPPHEKKGATMVVSGDGRYYNREAIQIII
EIAAANGVGRLWIGKGGIMSTPAVSAVIREREGGVAVGGIILTASHNPGG
PEEDFGIKYNMGNGEPALEAFTDAVYAATLNIEEVQVLTNCPKVNLDKLG
VTRVGDMVVEVIDPVQDYLAVLKEAFDFDLLKAFIARPGGFKLVFDAMHG
VAAPYAQVVLGQELGCPPSSFLHPDSKEDFGGLHPDPNLAYASDLVKTMG
LLPSGAPVPPSADSEDVPDLGAAADGDADRNMILGKRFFVTPSDSLALIA
ANAEAIPFFRDQGGLKTVARSMPTSQAVDRVAKAKGLNCVETPTGWKYFG
NLMDALALGGKEEYNPILCGEESFGTGSNHVREKDGLWAVLAWLSVLAHH
NPEGDAPLKPVSAIVQEHWAAYGRNYYCRYDYETVDADAANAMMAHLRAP
DFMPGMTINGFTLTEVDDFAYTDPVDGSQATKQGVRLIFGDGTRAVFRLS
GTGSTGATVRMYLEKYEPDVTKQGLPSSEVLKPLADLAIKLARLEEFTGR
TAPTVIT* back to topmRNA from alignment at chr10:245276..247623- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00740.1 ID=NO10G00740.1|Name=NO10G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2348bp|location=Sequence derived from alignment at chr10:245276..247623- (Nannochloropsis oceanica)
CAGATGTTTAAGAAGATGCGTTCCTTGTTGACGGGGGCGCTTATCTCCAT
CACAGCCTGTTGGTGGGATGGCATAATAGCCTTTACCATCGCCTCCCCTC
CCCTATCCTACACTGTCCGCCCCAGTCCAACGACCACCACGACTTCGACA
TCGCATTCGTGGGGCTGGCTACGTCCTGTTCGGGGGGGGGTGTCCCCCCT
TTCCTCATCCTCGCCGCTAGCCCCGCCGGGGCTGAACAAGATCACGGCCT
TGGAGACTACACCGGTGGAAGGAATGAAGCCAGGCACGTCCGGTCTGCGG
AAAAAGGTCAAGGTGGTGCGCGACGGCTTGTACCTGCACAATTTTGTCCA
AGCGCTTTTCGATACTTTGCCACCACACGAGAAGAAGGGTGCTACCATGG
TGGTCTCGGGGGACGGACGGTACTATAACCGCGAGGCCATCCAGATCATC
ATCGAGATCGCCGCAGCCAACGGCGTGGGCCGTTTATGGATCGGTAAAGG
CGGCATCATGTCCACCCCTGCCGTTTCCGCTGTCATTCGTGAAAGAGAAG
GTGGGGTGGCGGTTGGAGGGATCATCCTGACGGCTAGTCATAATCCGGGG
GGGCCGGAGGAGGATTTTGGGATTAAGTACAATATGGGAAATGGCGAACC
GGCATTGGAGGCTTTCACGGATGCTGTTTATGCGGCGACACTGAACATTG
AGGAGGTTCAAGTGCTTACAAATTGCCCAAAGGTAAACTTGGACAAGCTG
GGTGTGACAAGGGTGGGGGATATGGTGGTGGAGGTGATCGATCCCGTGCA
AGATTACTTGGCCGTCCTAAAAGAGGCCTTTGATTTTGACCTACTTAAGG
CCTTCATTGCTCGGCCCGGAGGATTCAAACTCGTCTTTGACGCCATGCAC
GGTGTGGCAGCCCCTTACGCTCAAGTCGTCCTGGGGCAAGAACTTGGATG
CCCTCCCTCTTCCTTCCTCCATCCCGATTCCAAGGAAGACTTTGGCGGTC
TCCATCCGGACCCCAATTTAGCCTATGCCTCTGATCTGGTTAAGACGATG
GGCTTGTTACCCTCTGGTGCACCTGTCCCTCCCTCGGCAGACAGTGAGGA
TGTACCCGACCTGGGGGCAGCTGCTGATGGTGATGCGGATCGGAACATGA
TATTGGGTAAGAGGTTTTTTGTGACCCCGTCGGACTCCCTGGCCCTGATC
GCCGCAAACGCGGAGGCGATCCCTTTTTTTAGGGACCAGGGGGGTTTGAA
AACGGTGGCGAGATCCATGCCCACGAGTCAGGCGGTGGATAGGGTGGCGA
AGGCGAAGGGTTTGAACTGCGTGGAGACACCCACGGGCTGGAAGTATTTT
GGGAATTTGATGGACGCCTTGGCCCTGGGGGGAAAGGAGGAATACAACCC
TATTCTGTGCGGGGAGGAGAGTTTTGGGACAGGCAGTAACCACGTGCGGG
AGAAGGATGGCTTGTGGGCGGTGCTGGCGTGGTTGTCGGTCTTGGCCCAT
CATAACCCCGAGGGAGACGCGCCGCTGAAGCCGGTCAGTGCCATTGTGCA
GGAGCACTGGGCGGCGTATGGAAGGTTGGTCATGGAGGGAGAGAGGGGAA
GCGGCTGGGGGAGGTTTCTTGTGTTGCATGGACGGTGGAGTGTGGGGGGC
TGCGTGTAATTGTTGCATGTTTGATGCACTCTCTCTTCATGCTCCTCTCC
CTCGACCTTTTGCTCTTTCGGCTTTTGACTTACCCTTTCTACCCTCTTGC
CCTCCTTTCCTCCCTCACTCCCTTTTAGGAACTACTACTGCCGGTACGAC
TACGAGACTGTGGACGCCGACGCCGCCAATGCCATGATGGCCCATTTGCG
GGCCCCGGATTTCATGCCCGGGATGACTATAAATGGTTTTACCTTGACAG
AGGTGGACGATTTTGCGTACACAGACCCAGTGGATGGGAGCCAGGCGACG
AAGCAGGGGGTGAGGTTGATATTTGGGGATGGGACCAGGGCTGTATTCCG
TTTGTCAGGCACGGGGTCAACGGGAGCGACAGTGAGGATGTACTTGGAGA
AGTACGAACCGGACGTAACCAAACAGGGCTTACCGAGCTCGGAGGTATTG
AAACCATTGGCAGATTTGGCTATCAAATTGGCACGATTGGAAGAGTTTAC
GGGCCGGACGGCACCAACAGTGATCACGTAAAAAGTCGAAAGGGGTGGGG
GGATAAGTAGAAGTGTTGTGGTGTTGAAATCAAGTGAAAGAATGAAAAGG
TCTGTTGCATACGAAAGGTCATTGAGCTTATCTGGCCTCGAGCGGTGGGG
TCTACAGTCGAAGCTCGGTGAAATGTGACCCGGAACGCACGAGAGGGG back to topCoding sequence (CDS) from alignment at chr10:245276..247623- >NO10G00740.1 ID=NO10G00740.1|Name=NO10G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at chr10:245276..247623- (Nannochloropsis oceanica)
ATGTTTAAGAAGATGCGTTCCTTGTTGACGGGGGCGCTTATCTCCATCAC
AGCCTGTTGGTGGGATGGCATAATAGCCTTTACCATCGCCTCCCCTCCCC
TATCCTACACTGTCCGCCCCAGTCCAACGACCACCACGACTTCGACATCG
CATTCGTGGGGCTGGCTACGTCCTGTTCGGGGGGGGGTGTCCCCCCTTTC
CTCATCCTCGCCGCTAGCCCCGCCGGGGCTGAACAAGATCACGGCCTTGG
AGACTACACCGGTGGAAGGAATGAAGCCAGGCACGTCCGGTCTGCGGAAA
AAGGTCAAGGTGGTGCGCGACGGCTTGTACCTGCACAATTTTGTCCAAGC
GCTTTTCGATACTTTGCCACCACACGAGAAGAAGGGTGCTACCATGGTGG
TCTCGGGGGACGGACGGTACTATAACCGCGAGGCCATCCAGATCATCATC
GAGATCGCCGCAGCCAACGGCGTGGGCCGTTTATGGATCGGTAAAGGCGG
CATCATGTCCACCCCTGCCGTTTCCGCTGTCATTCGTGAAAGAGAAGGTG
GGGTGGCGGTTGGAGGGATCATCCTGACGGCTAGTCATAATCCGGGGGGG
CCGGAGGAGGATTTTGGGATTAAGTACAATATGGGAAATGGCGAACCGGC
ATTGGAGGCTTTCACGGATGCTGTTTATGCGGCGACACTGAACATTGAGG
AGGTTCAAGTGCTTACAAATTGCCCAAAGGTAAACTTGGACAAGCTGGGT
GTGACAAGGGTGGGGGATATGGTGGTGGAGGTGATCGATCCCGTGCAAGA
TTACTTGGCCGTCCTAAAAGAGGCCTTTGATTTTGACCTACTTAAGGCCT
TCATTGCTCGGCCCGGAGGATTCAAACTCGTCTTTGACGCCATGCACGGT
GTGGCAGCCCCTTACGCTCAAGTCGTCCTGGGGCAAGAACTTGGATGCCC
TCCCTCTTCCTTCCTCCATCCCGATTCCAAGGAAGACTTTGGCGGTCTCC
ATCCGGACCCCAATTTAGCCTATGCCTCTGATCTGGTTAAGACGATGGGC
TTGTTACCCTCTGGTGCACCTGTCCCTCCCTCGGCAGACAGTGAGGATGT
ACCCGACCTGGGGGCAGCTGCTGATGGTGATGCGGATCGGAACATGATAT
TGGGTAAGAGGTTTTTTGTGACCCCGTCGGACTCCCTGGCCCTGATCGCC
GCAAACGCGGAGGCGATCCCTTTTTTTAGGGACCAGGGGGGTTTGAAAAC
GGTGGCGAGATCCATGCCCACGAGTCAGGCGGTGGATAGGGTGGCGAAGG
CGAAGGGTTTGAACTGCGTGGAGACACCCACGGGCTGGAAGTATTTTGGG
AATTTGATGGACGCCTTGGCCCTGGGGGGAAAGGAGGAATACAACCCTAT
TCTGTGCGGGGAGGAGAGTTTTGGGACAGGCAGTAACCACGTGCGGGAGA
AGGATGGCTTGTGGGCGGTGCTGGCGTGGTTGTCGGTCTTGGCCCATCAT
AACCCCGAGGGAGACGCGCCGCTGAAGCCGGTCAGTGCCATTGTGCAGGA
GCACTGGGCGGCGTATGGAAGGAACTACTACTGCCGGTACGACTACGAGA
CTGTGGACGCCGACGCCGCCAATGCCATGATGGCCCATTTGCGGGCCCCG
GATTTCATGCCCGGGATGACTATAAATGGTTTTACCTTGACAGAGGTGGA
CGATTTTGCGTACACAGACCCAGTGGATGGGAGCCAGGCGACGAAGCAGG
GGGTGAGGTTGATATTTGGGGATGGGACCAGGGCTGTATTCCGTTTGTCA
GGCACGGGGTCAACGGGAGCGACAGTGAGGATGTACTTGGAGAAGTACGA
ACCGGACGTAACCAAACAGGGCTTACCGAGCTCGGAGGTATTGAAACCAT
TGGCAGATTTGGCTATCAAATTGGCACGATTGGAAGAGTTTACGGGCCGG
ACGGCACCAACAGTGATCACGTAA back to top
|