NO10G00700.1, NO10G00700.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00700.1
Unique Name	NO10G00700.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2598
Alignment location	chr10:230548..233912 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:230548..233912 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G00700.1 vs.
Match: EWM25302.1 (Glucose-fructose oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 564.3 bits (1453), Expect = 2.900e-157
Identity = 277/363 (76.31%), Postives = 307/363 (84.57%), Query Frame = 0

Query:    2 MSHHDHDHDKPYSGNRRRLSSHHS-SSADDNKAGWAILGSATIAHKLWKAIRMSGNSRVVCVASRDFCRAQDFIDECQAQVPFPDAPEAVEGYAAALARDDVDVVYIPLPTALRKEWVLKAAASGKHVLVEKPVGLTTEDVQEMIQACIKHNVHLMDGVMFVHSARLPLLHHTLPSLGALKRINTEFCFKADDDFFKSNIRCSSATEPLGCLGDLGWYNIRFTLWALDWLLPIRARGCIHAANEEGVPYEFSAELIFDYGCSATFFCSFLTHETQLAVLNGEKASIQLKDFVLPVPGRYLSFDINRQCFKHEGLDQVVHSYTEKLHVSEASHGHPSSQEACMVRLLSNLSREGGGETTKWPEQ 364
            MS H H         RRRLSSHHS  +ADD  AG+AILGSA+IA KLWKA+ MSGNSRVVCVASRD  RAQ FIDECQA +PFP APEAVEGY AALARDDV  VYIPLPTALRKEWVLKAAASGKHVLVEKPVGL TEDVQEMIQACIKHNVHLMDGVMF+HSARL LL  TLPSLG L+RIN+EFCFKA++ FF+SNIRCSSATEPLGCLGDLGWYNIR TLWA++W LP+RARGC+   N +GVPYEFS EL+F+ GCSATFFCSFLTHETQLAVLNGE+AS+Q  DFVLP+PGRYL FD+N Q ++ EGLDQVVHSY+E+ HV EA +GHPS+QEACMVR LS+LSREG G     P +
Sbjct:    1 MSTHHH-----LQSGRRRLSSHHSLDAADDYVAGYAILGSASIARKLWKAMFMSGNSRVVCVASRDTARAQAFIDECQALLPFPQAPEAVEGYEAALARDDVQCVYIPLPTALRKEWVLKAAASGKHVLVEKPVGLNTEDVQEMIQACIKHNVHLMDGVMFMHSARLQLLQKTLPSLGPLRRINSEFCFKANEAFFQSNIRCSSATEPLGCLGDLGWYNIRLTLWAMNWYLPVRARGCVLKENADGVPYEFSGELLFESGCSATFFCSFLTHETQLAVLNGEEASVQYSDFVLPLPGRYLYFDVNHQSYQQEGLDQVVHSYSERHHVQEAGYGHPSAQEACMVRHLSDLSREGAGRPPSGPSR 358

The following BLAST results are available for this feature:

BLAST of NO10G00700.1 vs.

BLAST of NO10G00700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25302.1	2.900e-157	76.31	Glucose-fructose oxidoreductase [Nannochloropsis g...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00700	NO10G00700	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00700.1	NO10G00700.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00700.1.cds1	NO10G00700.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00700.1.cds2	NO10G00700.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00700.1.cds3	NO10G00700.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00700.1.cds4	NO10G00700.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00700.1.cds5	NO10G00700.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:230548..233912+
coding sequence from alignment at chr10:230548..233912+

mRNA sequence

>NO10G00700.1 ID=NO10G00700.1|Name=NO10G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2598bp
ACACTCCAGCCGCGAGTTTTCTGTAGATTTGAGTGTGGATGGGGATAAGG
GCGAGCTTGTGCGTCTGGTGCCTGCAATGCACACGTTGGTGCTTTTGTGT
AGATGTTGCGATTGATTGATTAATTGGTTTATTCTTCCCCCACCGTTCTT
TGGGGAGATTGATTGATTGCTTCTATCGTGAGATCGATAATAGCTCTTGT
TAAGTCTCTGAATAATCCGAAGTATGTATTGGGCCGTCGATAACCAATAG
CGTGTCGGATGGGGGAGACTGCATGAATTGCGAAGCCAGAAGGCGGCCAA
CCTCCTACCTCTTCAAGACCCTCTGCCTCGCCAACGTCCGACGAGGTTCT
GAACCTGGACAGTCGGACGGGGAGACGGTGGGCACGTGCATTGTGCACCT
GGAGTGCTCGAGAAAGACCTTTGTTATAACAAGTCAAGAAGAGTTTTTGG
TTGATTCTCCACATAGTGGCTCTTCCCAGGATGCTACACACTTTCGGAAA
CTGAAAGATGATTTTTGGTTCATTTTCCATTTCCAAGCTAGTTCGAGCAA
AGAGGTGCTGTAGCTCTCTCATGAACCTCACGTATGGGGAAAGGCACTTG
TCTGTGCACCTGGACGCTCGTGTACCACTTTGCGGTTCATGCGCACGTGC
CCAGTCCAGGTTGGACCTTTCCTCTCGCCCCTTACCATCCCCCCATCTAA
ACATGCCCCCACCCCCACCCCCCCGGCAGCTACCACAGTACAACCCCACG
TCCCATTAGGTTTTGCCACCCAACACCCATCCCCCTTTCCACATAACGAT
CCACAACAGGCAACACAGAACATCGGGCCCCTGCTCCACCCTCCCCTGCT
CCTCTACATATATACATTGTCGGAGCTCCCTCCGCATCCAGCAAGACCAT
GATGTCCCACCACGATCACGATCACGACAAACCGTATTCCGGCAACCGGC
GGCGCCTTAGCAGCCACCATTCCTCTTCTGCGGATGACAATAAAGCGGGT
TGGGCTATATTGGGCAGCGCTACCATTGCGCACAAGCTGTGGAAAGCCAT
ACGCATGAGCGGGAATTCACGCGTGGTCTGCGTAGCCTCCCGGGATTTTT
GTCGGGCCCAGGATTTTATAGACGAGTGCCAAGCCCAAGTGCCCTTTCCG
GACGCACCCGAGGCCGTGGAGGGGTACGCAGCGGCCTTGGCGCGGGACGA
TGTGGATGTGGTGTACATCCCTTTGCCTACTGCCCTGCGGAAGGAATGGG
TGCTGAAGGCAGCGGCGTCGGGGAAGCATGTATTGGTGGAAAAGCCGGTA
GGCCTCACGACAGAGGATGTGCAGGAGATGATCCAGGCTTGCATCAAGCA
CAACGTCCACCTCATGGACGGGGTCATGTTTGTGCACTCCGCCCGCCTGC
CCCTCCTCCACCACACCCTGCCCTCCCTCGGCGCCCTCAAGAGGATCAAC
ACGGAGTTTTGCTTCAAGGCCGACGACGATTTCTTCAAAAGCAACATTCG
TTGCTCTAGCGCCACAGAGCCTTTGGGATGCCTAGGGGATTTGGGGTGGT
ACAACATTCGCTTTACCCTCTGGGCACTCGATTGGCTCCTGCCCATCCGC
GCCCGTGGGTGTATCCACGCGGCGAATGAGGAGGGAGTACCTTACGAGTT
CTCCGCCGAGTTGATATTTGACTATGGGTGCTCGGCGACGTTCTTTTGCT
CTTTCTTGACGCATGAGACACAGCTTGCGGTTCTAAACGGCGAGAAGGCG
TCGATCCAGCTGAAAGACTTTGTCTTGCCCGTCCCCGGCCGGTATCTTTC
CTTCGATATCAATCGCCAATGCTTTAAACACGAGGGGCTCGACCAGGTCG
TGCACTCGTACACCGAGAAGCTCCACGTTAGCGAGGCCTCGCACGGGCAC
CCGTCCTCTCAAGAAGCCTGCATGGTCCGCCTTCTTTCGAACCTGTCGAG
GGAAGGCGGGGGGGAGACAACCAAGTGGCCAGAGCAGATGTTGAAGACTC
AGATGGTGCTGGACGCGGTACTGATGAGTGCCAAGGAGAGGGACGGAGGG
TGGGTGGAGATGGAGGGGGGAAAATAAAGGCAAGCAGGGATGGAGGGAGG
GAGGGAGGAAGGGAGAGACGGGCGAGGACGAATATTTACAAGGAGAGAAT
CAATAAATTGATTGGTACAAGGGAGGAATGGGGACCGTAAGGACCGTTGG
AACGAGGTGGAAATGACAAAAAATGAGAGATGGAGCCAACCCGTGCTCGC
CTGTCTGCGGAGGACCTCTGATATTATGATGAAACATCACCTGCGAGGAG
TCTGTTGATCAGGGCTCAACGCCGGTAAGGGAAGAAAGGGGCTTTACTTG
ACCGGTGCCGACACACGACATGTGATTGTATCTGCCTCTCCACCACGGTA
GCTGCCAGGTCGTGAATTTACAGTAGAGAGGAGAGAATGAGATTGAAAGA
GAAGGAGAAAGAGAAAGAGAGGGAAACAGAGAGGAAATATGAGACGAATT
GACTAGACCGACGAATTCTGCGCAGTCGAACACGAATACCCTTATCGTTC
ACACTCGCACCGACGATCAAACCATATACCACATAAAAGCAATAGCTA

protein sequence of NO10G00700.1

>NO10G00700.1-protein ID=NO10G00700.1-protein|Name=NO10G00700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MMSHHDHDHDKPYSGNRRRLSSHHSSSADDNKAGWAILGSATIAHKLWKA
IRMSGNSRVVCVASRDFCRAQDFIDECQAQVPFPDAPEAVEGYAAALARD
DVDVVYIPLPTALRKEWVLKAAASGKHVLVEKPVGLTTEDVQEMIQACIK
HNVHLMDGVMFVHSARLPLLHHTLPSLGALKRINTEFCFKADDDFFKSNI
RCSSATEPLGCLGDLGWYNIRFTLWALDWLLPIRARGCIHAANEEGVPYE
FSAELIFDYGCSATFFCSFLTHETQLAVLNGEKASIQLKDFVLPVPGRYL
SFDINRQCFKHEGLDQVVHSYTEKLHVSEASHGHPSSQEACMVRLLSNLS
REGGGETTKWPEQMLKTQMVLDAVLMSAKERDGGWVEMEGGK*

mRNA from alignment at chr10:230548..233912+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00700.1 ID=NO10G00700.1|Name=NO10G00700.1|organism=Nannochloropsis oceanica|type=mRNA|length=3365bp|location=Sequence derived from alignment at chr10:230548..233912+ (Nannochloropsis oceanica)
ACACTCCAGCCGCGAGTTTTCTGTAGATTTGAGTGTGGATGGGGATAAGG
GCGAGCTTGTGCGTCTGGTGCCTGCAATGCACACGTTGGTGCTTTTGTGT
AGATGTTGCGATTGATTGATTAATTGGTTTATTCTTCCCCCACCGTTCTT
TGGGGAGATTGATTGATTGCTTCTATCGTGAGATCGATAATAGCTCTTGT
TAAGTCTCTGAATAATCCGAAGTATGTATTGGGCCGTCGATAACCAATAG
CGTGTCGGATGGGGGAGACTGCATGAATTGCGAAGCCAGAAGGCGGCCAA
CCTCCTACCTCTTCAAGACCCTCTGCCTCGCCAACGTCCGACGAGGTTCT
GAACCTGGACAGTCGGACGGGGAGACGGTGGGCACGTGCATTGTGCACCT
GGAGTGCTCGAGAAAGACCTTTGTTATAACAAGTCAAGAAGAGTTTTTGG
TTGATTCTCCACATAGTGGCTCTTCCCAGGATGCTACACACTTTCGGAAA
CTGAAAGATGATTTTTGGTTCATTTTCCATTTCCAAGCTAGTTCGAGCAA
AGAGGTGCTGTAGCTCTCTCATGAACCTCACGTATGGGGAAAGGCACTTG
TCTGTGCACCTGGACGCTCGTGTACCACTTTGCGGTTCATGCGCACGTGC
CCAGTCCAGGTTGGACCTTTCCTCTCGCCCCTTACCATCCCCCCATCTAA
ACATGCCCCCACCCCCACCCCCCCGGCAGCTACCACAGTACAACCCCACG
TCCCATTAGGTTTTGCCACCCAACACCCATCCCCCTTTCCACATAACGAT
CCACAACAGGCAACACAGAACATCGGGCCCCTGCTCCACCCTCCCCTGCT
CCTCTACATATATACATTGTCGGAGCTCCCTCCGCATCCAGCAAGACCAT
GATGTCCCACCACGATCACGATCACGACAAACCGTATTCCGGCAACCGGC
GGCGCCTTAGCAGCCACCATTCCTCTTCTGCGGATGACAATAAAGCGGGT
TGGGCTATATTGGGCAGCGCTACCATTGCGCACAAGCTGTGGAAAGCCAT
ACGCATGAGCGGGAATTCACGCGTGGTCTGCGTAGCCTCCCGGGATTTTT
GTCGGGCCCAGGATTTTATAGACGAGTGCCAAGCCCAAGTGCCCTTTCCG
GACGCACCCGAGGCCGTGGAGGGGTACGCAGCGGCCTTGGCGCGGGACGA
TGTGGATGTGGTGTACATCCCTTTGCCTACTGCCCTGCGGAAGGAATGGG
TGCTGAAGGCAGCGGCGTCGGGGAAGCATGTATTGGTGGAAAAGCCGGTA
GGCCTCACGACAGAGGATGTGCAGGAGATGATCCAGGCTTGCATCAAGGT
AACAATTGGGGTACAATAACGATTTGAGGGATTTAACGAAGGGGGTAGAT
GGAAAGGAGGGATGAAACACTTTTTTAAAAAGCGGGTTCTAGTACACACT
CATGCCACCCTTCCCTTCCCTTCCTCCCTCCTCCCTTTTCTACCCCCAGC
ACAACGTCCACCTCATGGACGGGGTCATGTTTGTGCACTCCGCCCGCCTG
CCCCTCCTCCACCACACCCTGCCCTCCCTCGGCGCCCTCAAGAGGATCAA
CACGGAGTTTTGCTTCAAGGCCGACGACGATTTCTTCAAAAGCAACATTC
GTTGCTCTAGCGCCACAGAGCCTTTGGGATGCCTAGGGGATTTGGGGTAA
GTCACTGAAGGATAGCAGAGTGGGGGATGACGGGTATGAAGACCTAAACC
TCTTTGTTTCTGTGGCGGTGCTACGTCGAAGTAAATGATAGAAGAAAAGA
GAAGTCTTGGTTTTCTAGCGCCTCTAATTCACACCCCCATATCCCCGGCC
TCCTCCCCTTGCCTCCTCTACCCATCCTCTCTCCCTCCCACCTCTCCCTC
CTCCTAGGTGGTACAACATTCTCTAGCGCCTCTAATTCACATCCCCATAT
CCCCGGGCTCCCCCCCTTGCCTCCTCCACCCATCCTCTCCCCCTCCCACC
TCTCCCTTCTCCTAGGTGGTACAACATTCGCTTTACCCTCTGGGCACTCG
ATTGGCTCCTGCCCATCCGCGCCCGTGGGTGTATCCACGCGGCGAATGAG
GAGGGAGTACCTTACGAGTTCTCCGCCGAGTTGATATTTGACTATGGGTG
CTCGGCGACGTTCTTTTGCTCTTTCTTGACGCATGAGACACAGCTTGCGG
TAGGTGTTGTTCAACACGGGTGGTGGATGTTTCCCTTGATTGTGTTCGTC
CCTCTTCTCGTTCTTGATCTCAATCACTTACCGGACCACCCCCGCTTAAC
TTCCTCCCTCCATTCCCGTCCTCCACTCCCTAGGTTCTAAACGGCGAGAA
GGCGTCGATCCAGCTGAAAGACTTTGTCTTGCCCGTCCCCGGCCGGTATC
TTTCCTTCGATATCAATCGCCAATGCTTTAAACACGAGGGGCTCGACCAG
GTAGGAATAGAGGGAGGGAGGGGGAAAGGAGTGAAGGAGGAAGGGAGGAA
AGGCGGGATAAACTATACTTCGTCGCTGTATGACAGGATGAGGTAATCTC
CTAAATAGCCCTCCCTCCATCCATTCATCCATCCCTCCCTCCATCCCTCC
GTCCCTCCCTCAGGTCGTGCACTCGTACACCGAGAAGCTCCACGTTAGCG
AGGCCTCGCACGGGCACCCGTCCTCTCAAGAAGCCTGCATGGTCCGCCTT
CTTTCGAACCTGTCGAGGGAAGGCGGGGGGGAGACAACCAAGTGGCCAGA
GCAGATGTTGAAGACTCAGATGGTGCTGGACGCGGTACTGATGAGTGCCA
AGGAGAGGGACGGAGGGTGGGTGGAGATGGAGGGGGGAAAATAAAGGCAA
GCAGGGATGGAGGGAGGGAGGGAGGAAGGGAGAGACGGGCGAGGACGAAT
ATTTACAAGGAGAGAATCAATAAATTGATTGGTACAAGGGAGGAATGGGG
ACCGTAAGGACCGTTGGAACGAGGTGGAAATGACAAAAAATGAGAGATGG
AGCCAACCCGTGCTCGCCTGTCTGCGGAGGACCTCTGATATTATGATGAA
ACATCACCTGCGAGGAGTCTGTTGATCAGGGCTCAACGCCGGTAAGGGAA
GAAAGGGGCTTTACTTGACCGGTGCCGACACACGACATGTGATTGTATCT
GCCTCTCCACCACGGTAGCTGCCAGGTCGTGAATTTACAGTAGAGAGGAG
AGAATGAGATTGAAAGAGAAGGAGAAAGAGAAAGAGAGGGAAACAGAGAG
GAAATATGAGACGAATTGACTAGACCGACGAATTCTGCGCAGTCGAACAC
GAATACCCTTATCGTTCACACTCGCACCGACGATCAAACCATATACCACA
TAAAAGCAATAGCTA

Coding sequence (CDS) from alignment at chr10:230548..233912+

>NO10G00700.1 ID=NO10G00700.1|Name=NO10G00700.1|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at chr10:230548..233912+ (Nannochloropsis oceanica)
ATGATGTCCCACCACGATCACGATCACGACAAACCGTATTCCGGCAACCG
GCGGCGCCTTAGCAGCCACCATTCCTCTTCTGCGGATGACAATAAAGCGG
GTTGGGCTATATTGGGCAGCGCTACCATTGCGCACAAGCTGTGGAAAGCC
ATACGCATGAGCGGGAATTCACGCGTGGTCTGCGTAGCCTCCCGGGATTT
TTGTCGGGCCCAGGATTTTATAGACGAGTGCCAAGCCCAAGTGCCCTTTC
CGGACGCACCCGAGGCCGTGGAGGGGTACGCAGCGGCCTTGGCGCGGGAC
GATGTGGATGTGGTGTACATCCCTTTGCCTACTGCCCTGCGGAAGGAATG
GGTGCTGAAGGCAGCGGCGTCGGGGAAGCATGTATTGGTGGAAAAGCCGG
TAGGCCTCACGACAGAGGATGTGCAGGAGATGATCCAGGCTTGCATCAAG
CACAACGTCCACCTCATGGACGGGGTCATGTTTGTGCACTCCGCCCGCCT
GCCCCTCCTCCACCACACCCTGCCCTCCCTCGGCGCCCTCAAGAGGATCA
ACACGGAGTTTTGCTTCAAGGCCGACGACGATTTCTTCAAAAGCAACATT
CGTTGCTCTAGCGCCACAGAGCCTTTGGGATGCCTAGGGGATTTGGGGTG
GTACAACATTCGCTTTACCCTCTGGGCACTCGATTGGCTCCTGCCCATCC
GCGCCCGTGGGTGTATCCACGCGGCGAATGAGGAGGGAGTACCTTACGAG
TTCTCCGCCGAGTTGATATTTGACTATGGGTGCTCGGCGACGTTCTTTTG
CTCTTTCTTGACGCATGAGACACAGCTTGCGGTTCTAAACGGCGAGAAGG
CGTCGATCCAGCTGAAAGACTTTGTCTTGCCCGTCCCCGGCCGGTATCTT
TCCTTCGATATCAATCGCCAATGCTTTAAACACGAGGGGCTCGACCAGGT
CGTGCACTCGTACACCGAGAAGCTCCACGTTAGCGAGGCCTCGCACGGGC
ACCCGTCCTCTCAAGAAGCCTGCATGGTCCGCCTTCTTTCGAACCTGTCG
AGGGAAGGCGGGGGGGAGACAACCAAGTGGCCAGAGCAGATGTTGAAGAC
TCAGATGGTGCTGGACGCGGTACTGATGAGTGCCAAGGAGAGGGACGGAG
GGTGGGTGGAGATGGAGGGGGGAAAATAA

Synonyms

Publications