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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:225593..227581 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00680.1 vs.
Match: EWM25301.1 (BRCT domain protein [Nannochloropsis gaditana]) HSP 1 Score: 295.4 bits (755), Expect = 4.300e-76 Identity = 218/518 (42.08%), Postives = 285/518 (55.02%), Query Frame = 0
Query: 164 MTEKELKAMMERPPGMHFARPRQVAPWVE----GAAEKGGGRRGRRKVGSMPLLTPGWAAGVVGGVEVKGKVFLGLNVCLYGSTFVTTFPGARGLMGM--------KEGRETAGGRVEFMLADVMRVVKEQGGEASTNLVEESKTMRQMYEEEEEEGEEEESGGQEANGKGKGEV--EGREEEG------IGGRKTKRKQQEKGRKSTAKKREKKRQKKKEPCKSYEQDFLIVPSGQPCLRTTAAKLTRGIDILSFEWLLECLQAGRRIAPRFEHYIGMTRETEERMHQVVDIFGDPWTDTNGTVKELMKVLQRMPALPFALPTSCAASRGIAPEAAWQRLVEDGGWSAKDESMVLTAVNLFWGRKKVFYLDRYSDCG---PLDGEGRGEE-------------GRK--PLPFTTLDAAMLLLRLHGAVVSSSLHAGVSHIVVDRRERSRFSLLLERKRALRRHPWNACEKRVVGLGWVEGSVAAGYMMGFEEEGEYEGAGEGEGRKFLVSDKELAGG 644
MT +EL+A+ ERP G+ + A E G ++GG +R R V TPG G+V EVKG +F G+ +CLYGS F T P AR L+G+ KEG +G F + ++ RV+ EQGG+ASTNL+E K + EG EEE+GG E G V EG + G +R KS + + YEQD L+VP+G+PCLRT AA IDIL +WL+ECL AGRRI PR+EHY+GM R T RM +VD FGDPW G+ L +V RMP+L + SRG + AW+ V +G W DE +L V F+ +++ Y DRY+DCG P GE EE GRK LPFTTLDAA++LLRLHGA +SSSLHA V+H++VDR ER R+SL+L RKR LRR P ACEK VV + WV+ S+ AG ++ +EG E EG ++++VSD+EL G
Sbjct: 1 MTVQELQALRERPGGLWGRQDGHAAKGGEKRGRGQGKEGGRKRRARWVPVSAYATPG---GIVEA-EVKGSLFAGMKICLYGSEFTTRLPNARALVGLEEGGKEGGKEGVRESGKEGWFSIEELHRVIVEQGGQASTNLMEIEKG-----PWDGGEGGEEEAGGVEGGRGGDPAVTSEGNRHPNPPFVSPVYGMDIQRSPSPGISKSPPQPQR------------YEQDVLLVPAGRPCLRTQAAIREARIDILVVDWLVECLGAGRRIEPRYEHYVGMDRGTRRRMEGLVDGFGDPWIPREGS--RLEEVFARMPSL--------SPSRGPSLSGAWRCHVREGAWG-DDEDAILRGVVPFYSPRQIIYADRYADCGRVLPPVGEEDDEEATDDKEVGTREAKGRKRHALPFTTLDAAVILLRLHGAKISSSLHANVTHVLVDREERRRYSLILARKRELRRGPHYACEKWVVDVEWVKASLKAGRLLDL-QEGGIEECEEG-CQRYVVSDQELKEG 484
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00680.1 ID=NO10G00680.1|Name=NO10G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp
ATGAAGCCTGACTACGCCGAGACGACGGAGGAGATGGACGTGGTGATGCT
GGGAGGATACTATAGAGGGGGCGCGCTCTGGAGCGGTTACCCGAGCCGTT
TCCTCTTTGGGGTGCGGGCTACGAATGGGAGGTTGGGAGACGAGGACGAG
GACGAGGACGGGGACGAAGGAGAGAGGGAGGTGATGTATCATACGTTCGC
CAGAGTTGCGAATGGGCTCAAGACGAGGCAGAGGGAGGAGCTGCAGGAGC
AGCTGAAGGGACATTGGATGGAGGGAGGGGTAGGGAAGAAGCCCCCTCCG
TGGGTCGTGCCCTCAAAACCCGCGAAAGACTACGTGCCGCCCGTGTGGTT
GGACATCAAGAACGCGCCTGTCAAGGTGGTGTCGGTAAAGGGGGGGGAGC
TGGTGAAGAGTCGGTATTCAACGGTCGGGTTGACGGTTCGCTTTCCCCGG
ATCACGAGGCTGAGGCCGGAGAAGGGCTTGGAGGGGGTGATGACGGAGAA
AGAATTGAAGGCGATGATGGAACGACCACCGGGAATGCATTTCGCGCGTC
CACGCCAAGTGGCACCTTGGGTGGAGGGAGCAGCAGAGAAGGGAGGGGGG
AGGAGAGGCAGGAGAAAGGTGGGGAGCATGCCTTTGTTGACGCCAGGGTG
GGCGGCCGGGGTGGTGGGAGGGGTGGAGGTGAAGGGGAAGGTGTTTCTCG
GGTTGAATGTATGCTTGTATGGAAGCACGTTTGTCACGACGTTTCCGGGG
GCAAGGGGGCTGATGGGTATGAAGGAGGGAAGGGAGACGGCAGGGGGGAG
AGTGGAGTTTATGTTGGCAGATGTGATGCGGGTGGTGAAGGAGCAGGGGG
GGGAGGCGAGCACAAATCTGGTGGAGGAAAGCAAGACAATGCGACAGATG
TATGAGGAGGAGGAAGAGGAAGGGGAGGAGGAGGAAAGCGGTGGGCAGGA
AGCGAACGGGAAGGGGAAGGGGGAAGTGGAGGGAAGGGAGGAGGAAGGTA
TCGGCGGGCGCAAGACGAAACGAAAACAACAGGAGAAGGGGAGGAAGAGC
ACAGCCAAGAAGAGAGAGAAAAAGCGACAGAAGAAGAAGGAACCGTGCAA
GAGCTACGAGCAAGATTTTCTCATCGTTCCCTCCGGACAGCCCTGCCTGC
GCACTACCGCCGCCAAGCTGACCCGTGGCATTGACATCCTCTCCTTCGAG
TGGCTGCTGGAATGCCTCCAGGCCGGTCGACGAATCGCCCCACGCTTTGA
ACACTACATCGGCATGACTCGTGAGACGGAGGAAAGGATGCACCAGGTTG
TGGACATATTTGGCGACCCGTGGACGGACACAAACGGAACCGTTAAAGAG
CTGATGAAGGTGTTGCAACGCATGCCTGCCCTTCCGTTCGCCCTTCCTAC
CTCCTGTGCTGCGTCTCGTGGAATTGCCCCAGAAGCGGCTTGGCAGCGGT
TGGTGGAGGATGGGGGGTGGAGCGCAAAGGACGAAAGCATGGTGCTGACG
GCGGTAAACTTGTTTTGGGGGAGGAAGAAGGTCTTCTACCTCGATCGATA
CTCGGATTGTGGGCCTTTGGACGGTGAGGGCAGAGGGGAGGAGGGGCGCA
AGCCGTTGCCATTTACGACGCTGGACGCGGCGATGCTCCTGTTGCGGCTG
CACGGAGCCGTGGTCTCGTCCAGTCTCCACGCAGGAGTCTCGCACATCGT
GGTCGATCGACGAGAGCGTTCGCGTTTCTCTTTGCTGCTGGAGCGGAAGC
GAGCGCTAAGACGGCATCCTTGGAATGCATGTGAGAAGCGGGTAGTAGGC
CTTGGATGGGTTGAGGGAAGTGTGGCGGCGGGGTATATGATGGGGTTTGA
AGAGGAGGGGGAGTATGAGGGGGCAGGCGAGGGGGAAGGGCGGAAATTTT
TGGTGTCGGACAAGGAGCTGGCGGGGGGAGGCGTTGGATTGGGGAATGAG
GAGAAGGAGGAGGATTGTCGCGAAGAGGTGGAGTTCTAG back to topprotein sequence of NO10G00680.1 >NO10G00680.1-protein ID=NO10G00680.1-protein|Name=NO10G00680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=663bp
MKPDYAETTEEMDVVMLGGYYRGGALWSGYPSRFLFGVRATNGRLGDEDE
DEDGDEGEREVMYHTFARVANGLKTRQREELQEQLKGHWMEGGVGKKPPP
WVVPSKPAKDYVPPVWLDIKNAPVKVVSVKGGELVKSRYSTVGLTVRFPR
ITRLRPEKGLEGVMTEKELKAMMERPPGMHFARPRQVAPWVEGAAEKGGG
RRGRRKVGSMPLLTPGWAAGVVGGVEVKGKVFLGLNVCLYGSTFVTTFPG
ARGLMGMKEGRETAGGRVEFMLADVMRVVKEQGGEASTNLVEESKTMRQM
YEEEEEEGEEEESGGQEANGKGKGEVEGREEEGIGGRKTKRKQQEKGRKS
TAKKREKKRQKKKEPCKSYEQDFLIVPSGQPCLRTTAAKLTRGIDILSFE
WLLECLQAGRRIAPRFEHYIGMTRETEERMHQVVDIFGDPWTDTNGTVKE
LMKVLQRMPALPFALPTSCAASRGIAPEAAWQRLVEDGGWSAKDESMVLT
AVNLFWGRKKVFYLDRYSDCGPLDGEGRGEEGRKPLPFTTLDAAMLLLRL
HGAVVSSSLHAGVSHIVVDRRERSRFSLLLERKRALRRHPWNACEKRVVG
LGWVEGSVAAGYMMGFEEEGEYEGAGEGEGRKFLVSDKELAGGGVGLGNE
EKEEDCREEVEF* back to topmRNA from alignment at chr10:225593..227581- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00680.1 ID=NO10G00680.1|Name=NO10G00680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at chr10:225593..227581- (Nannochloropsis oceanica)
ATGAAGCCTGACTACGCCGAGACGACGGAGGAGATGGACGTGGTGATGCT
GGGAGGATACTATAGAGGGGGCGCGCTCTGGAGCGGTTACCCGAGCCGTT
TCCTCTTTGGGGTGCGGGCTACGAATGGGAGGTTGGGAGACGAGGACGAG
GACGAGGACGGGGACGAAGGAGAGAGGGAGGTGATGTATCATACGTTCGC
CAGAGTTGCGAATGGGCTCAAGACGAGGCAGAGGGAGGAGCTGCAGGAGC
AGCTGAAGGGACATTGGATGGAGGGAGGGGTAGGGAAGAAGCCCCCTCCG
TGGGTCGTGCCCTCAAAACCCGCGAAAGACTACGTGCCGCCCGTGTGGTT
GGACATCAAGAACGCGCCTGTCAAGGTGGTGTCGGTAAAGGGGGGGGAGC
TGGTGAAGAGTCGGTATTCAACGGTCGGGTTGACGGTTCGCTTTCCCCGG
ATCACGAGGCTGAGGCCGGAGAAGGGCTTGGAGGGGGTGATGACGGAGAA
AGAATTGAAGGCGATGATGGAACGACCACCGGGAATGCATTTCGCGCGTC
CACGCCAAGTGGCACCTTGGGTGGAGGGAGCAGCAGAGAAGGGAGGGGGG
AGGAGAGGCAGGAGAAAGGTGGGGAGCATGCCTTTGTTGACGCCAGGGTG
GGCGGCCGGGGTGGTGGGAGGGGTGGAGGTGAAGGGGAAGGTGTTTCTCG
GGTTGAATGTATGCTTGTATGGAAGCACGTTTGTCACGACGTTTCCGGGG
GCAAGGGGGCTGATGGGTATGAAGGAGGGAAGGGAGACGGCAGGGGGGAG
AGTGGAGTTTATGTTGGCAGATGTGATGCGGGTGGTGAAGGAGCAGGGGG
GGGAGGCGAGCACAAATCTGGTGGAGGAAAGCAAGACAATGCGACAGATG
TATGAGGAGGAGGAAGAGGAAGGGGAGGAGGAGGAAAGCGGTGGGCAGGA
AGCGAACGGGAAGGGGAAGGGGGAAGTGGAGGGAAGGGAGGAGGAAGGTA
TCGGCGGGCGCAAGACGAAACGAAAACAACAGGAGAAGGGGAGGAAGAGC
ACAGCCAAGAAGAGAGAGAAAAAGCGACAGAAGAAGAAGGAACCGTGCAA
GAGCTACGAGCAAGATTTTCTCATCGTTCCCTCCGGACAGCCCTGCCTGC
GCACTACCGCCGCCAAGCTGACCCGTGGCATTGACATCCTCTCCTTCGAG
TGGCTGCTGGAATGCCTCCAGGCCGGTCGACGAATCGCCCCACGCTTTGA
ACACTACATCGGCATGACTCGTGAGACGGAGGAAAGGATGCACCAGGTTG
TGGACATATTTGGCGACCCGTGGACGGACACAAACGGAACCGTTAAAGAG
CTGATGAAGGTGTTGCAACGCATGCCTGCCCTTCCGTTCGCCCTTCCTAC
CTCCTGTGCTGCGTCTCGTGGAATTGCCCCAGAAGCGGCTTGGCAGCGGT
TGGTGGAGGATGGGGGGTGGAGCGCAAAGGACGAAAGCATGGTGCTGACG
GCGGTAAACTTGTTTTGGGGGAGGAAGAAGGTCTTCTACCTCGATCGATA
CTCGGATTGTGGGCCTTTGGACGGTGAGGGCAGAGGGGAGGAGGGGCGCA
AGCCGTTGCCATTTACGACGCTGGACGCGGCGATGCTCCTGTTGCGGCTG
CACGGAGCCGTGGTCTCGTCCAGTCTCCACGCAGGAGTCTCGCACATCGT
GGTCGATCGACGAGAGCGTTCGCGTTTCTCTTTGCTGCTGGAGCGGAAGC
GAGCGCTAAGACGGCATCCTTGGAATGCATGTGAGAAGCGGGTAGTAGGC
CTTGGATGGGTTGAGGGAAGTGTGGCGGCGGGGTATATGATGGGGTTTGA
AGAGGAGGGGGAGTATGAGGGGGCAGGCGAGGGGGAAGGGCGGAAATTTT
TGGTGTCGGACAAGGAGCTGGCGGGGGGAGGCGTTGGATTGGGGAATGAG
GAGAAGGAGGAGGATTGTCGCGAAGAGGTGGAGTTCTAG back to topCoding sequence (CDS) from alignment at chr10:225593..227581- >NO10G00680.1 ID=NO10G00680.1|Name=NO10G00680.1|organism=Nannochloropsis oceanica|type=CDS|length=1989bp|location=Sequence derived from alignment at chr10:225593..227581- (Nannochloropsis oceanica)
ATGAAGCCTGACTACGCCGAGACGACGGAGGAGATGGACGTGGTGATGCT
GGGAGGATACTATAGAGGGGGCGCGCTCTGGAGCGGTTACCCGAGCCGTT
TCCTCTTTGGGGTGCGGGCTACGAATGGGAGGTTGGGAGACGAGGACGAG
GACGAGGACGGGGACGAAGGAGAGAGGGAGGTGATGTATCATACGTTCGC
CAGAGTTGCGAATGGGCTCAAGACGAGGCAGAGGGAGGAGCTGCAGGAGC
AGCTGAAGGGACATTGGATGGAGGGAGGGGTAGGGAAGAAGCCCCCTCCG
TGGGTCGTGCCCTCAAAACCCGCGAAAGACTACGTGCCGCCCGTGTGGTT
GGACATCAAGAACGCGCCTGTCAAGGTGGTGTCGGTAAAGGGGGGGGAGC
TGGTGAAGAGTCGGTATTCAACGGTCGGGTTGACGGTTCGCTTTCCCCGG
ATCACGAGGCTGAGGCCGGAGAAGGGCTTGGAGGGGGTGATGACGGAGAA
AGAATTGAAGGCGATGATGGAACGACCACCGGGAATGCATTTCGCGCGTC
CACGCCAAGTGGCACCTTGGGTGGAGGGAGCAGCAGAGAAGGGAGGGGGG
AGGAGAGGCAGGAGAAAGGTGGGGAGCATGCCTTTGTTGACGCCAGGGTG
GGCGGCCGGGGTGGTGGGAGGGGTGGAGGTGAAGGGGAAGGTGTTTCTCG
GGTTGAATGTATGCTTGTATGGAAGCACGTTTGTCACGACGTTTCCGGGG
GCAAGGGGGCTGATGGGTATGAAGGAGGGAAGGGAGACGGCAGGGGGGAG
AGTGGAGTTTATGTTGGCAGATGTGATGCGGGTGGTGAAGGAGCAGGGGG
GGGAGGCGAGCACAAATCTGGTGGAGGAAAGCAAGACAATGCGACAGATG
TATGAGGAGGAGGAAGAGGAAGGGGAGGAGGAGGAAAGCGGTGGGCAGGA
AGCGAACGGGAAGGGGAAGGGGGAAGTGGAGGGAAGGGAGGAGGAAGGTA
TCGGCGGGCGCAAGACGAAACGAAAACAACAGGAGAAGGGGAGGAAGAGC
ACAGCCAAGAAGAGAGAGAAAAAGCGACAGAAGAAGAAGGAACCGTGCAA
GAGCTACGAGCAAGATTTTCTCATCGTTCCCTCCGGACAGCCCTGCCTGC
GCACTACCGCCGCCAAGCTGACCCGTGGCATTGACATCCTCTCCTTCGAG
TGGCTGCTGGAATGCCTCCAGGCCGGTCGACGAATCGCCCCACGCTTTGA
ACACTACATCGGCATGACTCGTGAGACGGAGGAAAGGATGCACCAGGTTG
TGGACATATTTGGCGACCCGTGGACGGACACAAACGGAACCGTTAAAGAG
CTGATGAAGGTGTTGCAACGCATGCCTGCCCTTCCGTTCGCCCTTCCTAC
CTCCTGTGCTGCGTCTCGTGGAATTGCCCCAGAAGCGGCTTGGCAGCGGT
TGGTGGAGGATGGGGGGTGGAGCGCAAAGGACGAAAGCATGGTGCTGACG
GCGGTAAACTTGTTTTGGGGGAGGAAGAAGGTCTTCTACCTCGATCGATA
CTCGGATTGTGGGCCTTTGGACGGTGAGGGCAGAGGGGAGGAGGGGCGCA
AGCCGTTGCCATTTACGACGCTGGACGCGGCGATGCTCCTGTTGCGGCTG
CACGGAGCCGTGGTCTCGTCCAGTCTCCACGCAGGAGTCTCGCACATCGT
GGTCGATCGACGAGAGCGTTCGCGTTTCTCTTTGCTGCTGGAGCGGAAGC
GAGCGCTAAGACGGCATCCTTGGAATGCATGTGAGAAGCGGGTAGTAGGC
CTTGGATGGGTTGAGGGAAGTGTGGCGGCGGGGTATATGATGGGGTTTGA
AGAGGAGGGGGAGTATGAGGGGGCAGGCGAGGGGGAAGGGCGGAAATTTT
TGGTGTCGGACAAGGAGCTGGCGGGGGGAGGCGTTGGATTGGGGAATGAG
GAGAAGGAGGAGGATTGTCGCGAAGAGGTGGAGTTCTAG back to top
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