NO10G00650.1, NO10G00650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00650.1
Unique NameNO10G00650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr10:218213..219343 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:218213..219343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00650.1 vs.
Match: EWM25295.1 (gdp-fucose transporter 1 [Nannochloropsis gaditana])

HSP 1 Score: 572.4 bits (1474), Expect = 1.000e-159
Identity = 300/376 (79.79%), Postives = 323/376 (85.90%), Query Frame = 0 
Query:    1 MTTSPSKAAQHATNTKHIASVVGAYWLVSISMVYLNKVLMTNTELSIPAPLFVTWFQCLFTTGLCYLCGELGEVQRRKGKTTGYFNQFPAMRYNWTVARKIGVLSLVFVGMVTFNNLCLKYVEVSFYNVARSLTIVFNVFLSFAILRMTVSGPTLACLVLVFLGFWVGADGEANFSLVGTLSGVCSSLFVSLNSIYTKKVLPVVNDNQWVLTFVNNMNACLLFLPLILFLELPTLLEHWSKFFSPLFWAGMSLSGLLGFAIGTVTVMQIKATSPLTHNISGTAKAAFQSILAFYLWGNPATTKSLVGIALVLGGSSCYTYVAMKDAERKRRASGVSGIGREGGAGGGAAGTSPLLPVKSPADAGGVMGVGVKLMGA 377
            M+   SK+A HA N KHIASVV AYW+VSISMVYLNKVLMTN+E SIPAPLF+TWFQC FTT LCY+CGELGEVQRRKGK TGYF QFPAMRY  TVARK+GVLSLVFVGM+TFNNLCLKYVEVSFYNVARSLTIVFNV LS AILR  VS PT+ACL LVF+GFWVGADGE NFSL+GTLSGV SSLFVSLNSIYTKKVLP VNDNQWVLTFVNN NAC+LFLPLI FLELP LL+HW+  FSPLFW GM LSGLLGFAIGTVTVMQIKATSPLTHNISGTAKAA QS+LAFYLWGNPATTKSL+GIALVLGGSS YT+VAM++AE+KRR SG++G G  G    G+     LLPVKSP   G   G GVKL GA
Sbjct:    1 MSVGHSKSAAHAANMKHIASVVAAYWIVSISMVYLNKVLMTNSEFSIPAPLFMTWFQCFFTTCLCYVCGELGEVQRRKGKATGYFMQFPAMRYTGTVARKVGVLSLVFVGMMTFNNLCLKYVEVSFYNVARSLTIVFNVLLSLAILRTFVSLPTVACLFLVFVGFWVGADGEVNFSLLGTLSGVTSSLFVSLNSIYTKKVLPAVNDNQWVLTFVNNFNACILFLPLIFFLELPILLQHWTTLFSPLFWTGMCLSGLLGFAIGTVTVMQIKATSPLTHNISGTAKAAVQSLLAFYLWGNPATTKSLLGIALVLGGSSAYTFVAMREAEKKRRTSGLAG-GGGGSKSNGSTEVGALLPVKSPGATGS--GAGVKLTGA 373
The following BLAST results are available for this feature:
BLAST of NO10G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25295.11.000e-15979.79gdp-fucose transporter 1 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00650NO10G00650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00650.1NO10G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00650.1.cds1NO10G00650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00650.1 ID=NO10G00650.1|Name=NO10G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGACGACCAGCCCCAGCAAAGCCGCGCAACATGCGACCAACACCAAGCA
TATCGCCTCGGTAGTAGGAGCCTACTGGCTCGTCTCCATCAGCATGGTCT
ATCTCAATAAGGTCTTGATGACGAACACGGAACTCTCCATCCCCGCCCCC
CTTTTCGTCACCTGGTTCCAATGCCTCTTCACTACAGGTCTTTGCTACTT
GTGCGGGGAGCTCGGCGAAGTCCAACGACGGAAAGGCAAGACTACAGGGT
ACTTTAATCAGTTCCCTGCCATGCGATACAACTGGACGGTGGCTCGTAAG
ATTGGGGTGTTGTCATTGGTCTTCGTGGGGATGGTGACCTTCAATAACCT
CTGCTTGAAGTACGTGGAGGTCTCGTTCTATAACGTGGCCAGGTCCTTAA
CGATTGTCTTCAATGTCTTCTTATCGTTTGCGATCCTGAGGATGACTGTA
TCCGGGCCCACCTTGGCGTGTCTTGTGTTGGTTTTCCTCGGTTTCTGGGT
CGGGGCGGACGGAGAGGCCAATTTCTCCCTTGTGGGCACTCTATCAGGGG
TATGCTCCTCCCTCTTCGTGAGCTTAAACAGCATCTACACCAAGAAAGTC
TTGCCTGTCGTGAACGACAATCAATGGGTGCTGACGTTCGTAAACAACAT
GAACGCCTGCCTTCTCTTCCTACCCCTCATCCTTTTCCTTGAACTTCCGA
CTCTTCTCGAGCACTGGTCGAAGTTTTTCTCTCCTCTCTTCTGGGCCGGC
ATGTCCCTCTCCGGCCTTCTCGGCTTCGCGATCGGGACTGTGACAGTGAT
GCAAATCAAGGCTACGTCCCCGTTGACTCATAACATCAGCGGTACGGCCA
AGGCTGCCTTTCAATCGATCTTGGCCTTCTATTTGTGGGGGAACCCAGCC
ACGACGAAGAGTCTGGTGGGCATCGCCCTGGTCCTGGGAGGCTCCTCATG
CTATACATACGTGGCGATGAAGGACGCCGAGAGAAAGCGGCGGGCGAGTG
GAGTAAGTGGGATAGGACGAGAAGGAGGGGCTGGGGGAGGAGCGGCGGGA
ACGAGCCCGTTATTGCCCGTGAAAAGCCCGGCGGACGCGGGAGGAGTGAT
GGGGGTAGGCGTGAAGTTGATGGGGGCTTAG
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protein sequence of NO10G00650.1

>NO10G00650.1-protein ID=NO10G00650.1-protein|Name=NO10G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MTTSPSKAAQHATNTKHIASVVGAYWLVSISMVYLNKVLMTNTELSIPAP
LFVTWFQCLFTTGLCYLCGELGEVQRRKGKTTGYFNQFPAMRYNWTVARK
IGVLSLVFVGMVTFNNLCLKYVEVSFYNVARSLTIVFNVFLSFAILRMTV
SGPTLACLVLVFLGFWVGADGEANFSLVGTLSGVCSSLFVSLNSIYTKKV
LPVVNDNQWVLTFVNNMNACLLFLPLILFLELPTLLEHWSKFFSPLFWAG
MSLSGLLGFAIGTVTVMQIKATSPLTHNISGTAKAAFQSILAFYLWGNPA
TTKSLVGIALVLGGSSCYTYVAMKDAERKRRASGVSGIGREGGAGGGAAG
TSPLLPVKSPADAGGVMGVGVKLMGA*
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mRNA from alignment at chr10:218213..219343+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00650.1 ID=NO10G00650.1|Name=NO10G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at chr10:218213..219343+ (Nannochloropsis oceanica)
ATGACGACCAGCCCCAGCAAAGCCGCGCAACATGCGACCAACACCAAGCA
TATCGCCTCGGTAGTAGGAGCCTACTGGCTCGTCTCCATCAGCATGGTCT
ATCTCAATAAGGTCTTGATGACGAACACGGAACTCTCCATCCCCGCCCCC
CTTTTCGTCACCTGGTTCCAATGCCTCTTCACTACAGGTCTTTGCTACTT
GTGCGGGGAGCTCGGCGAAGTCCAACGACGGAAAGGCAAGACTACAGGGT
ACTTTAATCAGTTCCCTGCCATGCGATACAACTGGACGGTGGCTCGTAAG
ATTGGGGTGTTGTCATTGGTCTTCGTGGGGATGGTGACCTTCAATAACCT
CTGCTTGAAGTACGTGGAGGTCTCGTTCTATAACGTGGCCAGGTCCTTAA
CGATTGTCTTCAATGTCTTCTTATCGTTTGCGATCCTGAGGATGACTGTA
TCCGGGCCCACCTTGGCGTGTCTTGTGTTGGTTTTCCTCGGTTTCTGGGT
CGGGGCGGACGGAGAGGCCAATTTCTCCCTTGTGGGCACTCTATCAGGGG
TATGCTCCTCCCTCTTCGTGAGCTTAAACAGCATCTACACCAAGAAAGTC
TTGCCTGTCGTGAACGACAATCAATGGGTGCTGACGTTCGTAAACAACAT
GAACGCCTGCCTTCTCTTCCTACCCCTCATCCTTTTCCTTGAACTTCCGA
CTCTTCTCGAGCACTGGTCGAAGTTTTTCTCTCCTCTCTTCTGGGCCGGC
ATGTCCCTCTCCGGCCTTCTCGGCTTCGCGATCGGGACTGTGACAGTGAT
GCAAATCAAGGCTACGTCCCCGTTGACTCATAACATCAGCGGTACGGCCA
AGGCTGCCTTTCAATCGATCTTGGCCTTCTATTTGTGGGGGAACCCAGCC
ACGACGAAGAGTCTGGTGGGCATCGCCCTGGTCCTGGGAGGCTCCTCATG
CTATACATACGTGGCGATGAAGGACGCCGAGAGAAAGCGGCGGGCGAGTG
GAGTAAGTGGGATAGGACGAGAAGGAGGGGCTGGGGGAGGAGCGGCGGGA
ACGAGCCCGTTATTGCCCGTGAAAAGCCCGGCGGACGCGGGAGGAGTGAT
GGGGGTAGGCGTGAAGTTGATGGGGGCTTAG
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Coding sequence (CDS) from alignment at chr10:218213..219343+

>NO10G00650.1 ID=NO10G00650.1|Name=NO10G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr10:218213..219343+ (Nannochloropsis oceanica)
ATGACGACCAGCCCCAGCAAAGCCGCGCAACATGCGACCAACACCAAGCA
TATCGCCTCGGTAGTAGGAGCCTACTGGCTCGTCTCCATCAGCATGGTCT
ATCTCAATAAGGTCTTGATGACGAACACGGAACTCTCCATCCCCGCCCCC
CTTTTCGTCACCTGGTTCCAATGCCTCTTCACTACAGGTCTTTGCTACTT
GTGCGGGGAGCTCGGCGAAGTCCAACGACGGAAAGGCAAGACTACAGGGT
ACTTTAATCAGTTCCCTGCCATGCGATACAACTGGACGGTGGCTCGTAAG
ATTGGGGTGTTGTCATTGGTCTTCGTGGGGATGGTGACCTTCAATAACCT
CTGCTTGAAGTACGTGGAGGTCTCGTTCTATAACGTGGCCAGGTCCTTAA
CGATTGTCTTCAATGTCTTCTTATCGTTTGCGATCCTGAGGATGACTGTA
TCCGGGCCCACCTTGGCGTGTCTTGTGTTGGTTTTCCTCGGTTTCTGGGT
CGGGGCGGACGGAGAGGCCAATTTCTCCCTTGTGGGCACTCTATCAGGGG
TATGCTCCTCCCTCTTCGTGAGCTTAAACAGCATCTACACCAAGAAAGTC
TTGCCTGTCGTGAACGACAATCAATGGGTGCTGACGTTCGTAAACAACAT
GAACGCCTGCCTTCTCTTCCTACCCCTCATCCTTTTCCTTGAACTTCCGA
CTCTTCTCGAGCACTGGTCGAAGTTTTTCTCTCCTCTCTTCTGGGCCGGC
ATGTCCCTCTCCGGCCTTCTCGGCTTCGCGATCGGGACTGTGACAGTGAT
GCAAATCAAGGCTACGTCCCCGTTGACTCATAACATCAGCGGTACGGCCA
AGGCTGCCTTTCAATCGATCTTGGCCTTCTATTTGTGGGGGAACCCAGCC
ACGACGAAGAGTCTGGTGGGCATCGCCCTGGTCCTGGGAGGCTCCTCATG
CTATACATACGTGGCGATGAAGGACGCCGAGAGAAAGCGGCGGGCGAGTG
GAGTAAGTGGGATAGGACGAGAAGGAGGGGCTGGGGGAGGAGCGGCGGGA
ACGAGCCCGTTATTGCCCGTGAAAAGCCCGGCGGACGCGGGAGGAGTGAT
GGGGGTAGGCGTGAAGTTGATGGGGGCTTAG
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Synonyms
Publications