NO10G00620.1, NO10G00620.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00620.1
Unique Name	NO10G00620.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2215
Alignment location	chr10:208010..210594 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:208010..210594 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO10G00620.1 vs.
Match: EWM25290.1 (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana])

HSP 1 Score: 229.2 bits (583), Expect = 2.200e-56
Identity = 126/222 (56.76%), Postives = 156/222 (70.27%), Query Frame = 0

Query:    3 NATPSKSAPQAYVTPSPPAARSSALFASSSSTKTTKPEAVGELYRFRVWHTALLLTLAFLLDIPFLIDRLTTKQYTVHTKGGVLITGASTGIGRDAAVALAIKHKGFVVYAGVRNGKDAKAISGLNIPNLLPVTLDVTNERSINSAKKIIMKDLASKGDVGGKEGGGGAAAAGLPLVAVVNNAGIAGRSPLEFHAMAAVEKIFHVNVFGLLRVTQVFLPEIR 225
            +ATP K+ P+A  + + P   +SA      ++K      VGELYR R WHT ++LTLA LLD+PFLIDRL    YT HT GGVL+TGASTGIGRDAA+ LA K  G +VYAGVRN +DAKAI+ L++PNLLPVT+DVT + S+ +A++ I+KDLAS+G               LP V +VNNAG+ G +PLE HA+  VEKIF VNVFGLLRVTQ FLPEIR
Sbjct:   37 SATPVKAVPEAASSSASPPPPTSAQIPPRPASKP-----VGELYRIRPWHTVIVLTLALLLDLPFLIDRLALSPYTSHTTGGVLVTGASTGIGRDAAITLATKEPGLIVYAGVRNLRDAKAITALHLPNLLPVTMDVTKDNSVQAARRTILKDLASRGPEPDNP---------LPFVGLVNNAGVTGMAPLEHHALPEVEKIFAVNVFGLLRVTQAFLPEIR 244

The following BLAST results are available for this feature:

BLAST of NO10G00620.1 vs.

BLAST of NO10G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM25290.1	2.200e-56	56.76	short-chain dehydrogenase reductase sdr, partial [...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00620	NO10G00620	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00620.1	NO10G00620.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00620.1.cds1	NO10G00620.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00620.1.cds2	NO10G00620.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00620.1.cds3	NO10G00620.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00620.1.cds4	NO10G00620.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:208010..210594-
coding sequence from alignment at chr10:208010..210594-

mRNA sequence

>NO10G00620.1 ID=NO10G00620.1|Name=NO10G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp
CACGATTTGGTCGTTGAGAAGGATTATGCGGGTGTTTTGAAGAAATCTCG
GCCTCTAATGCACGTGCATCCCGCATGCCCCACAGGCACATCAACAGCCA
AAAAATGTCGATGTAAGGTACGATGTCCTGCAGTGTTTTGAGGACATGAG
GATGCGACTTTTTGGTCAAGAAGAGGGCAACTGTGGTGACGGGAGCATGA
CCTCGCGCAAATCCCTCCAGCAACCCTCGAGGAACTTCTGACCACTGGCA
GGAAACAAACGCACGCTTGTCCACACTCGCACAAACACGGCCACGCGTGC
ATGCAGTGGTGCATTGTAGTGGACTGCCGGTGGGCCCTGGTATAAAGGGA
AGTGATTGCGCCAGTAGAATCTGCTCGGCCCTGCGGCACGACACGACATC
GCTCGCCGTCTCGCACGAACAGCACCGGCTCATGTCCTTCTTCGACCGCT
ATTCCAAGCACTGCTGCCCTGTGCCCGAGGCCCGTTTTGCACCTGCAATC
CAAATGATCTCTCTGACAAGGGTCTCACGAAGCTGTGCCCCTGCTGGGAA
GACTGGATGCCTTCCAACAAGCCCTACCATGCCTGACTCTAGCCTCCTCC
CTCCTCCCTCCCTCCTTTTCAATAGCCACAAGCAGGCAGTTGTATCAACA
TGGCTAATGCTACACCCAGCAAATCCGCGCCCCAAGCCTATGTCACTCCT
TCTCCTCCTGCTGCTCGTTCGTCCGCCCTCTTCGCTTCCTCTTCCTCTAC
CAAAACTACCAAGCCTGAGGCCGTCGGGGAGCTCTACCGGTTTCGCGTCT
GGCACACTGCCCTCCTCCTCACCCTGGCCTTCCTCCTTGACATTCCCTTT
CTTATTGATCGGCTCACAACAAAACAGTACACTGTGCATACGAAAGGGGG
GGTGTTAATCACTGGAGCAAGCACTGGAATCGGGAGAGATGCGGCCGTGG
CGTTGGCGATCAAGCACAAGGGCTTTGTGGTCTATGCAGGCGTGCGCAAT
GGCAAAGACGCCAAGGCTATCTCAGGCCTGAACATCCCGAATCTCCTGCC
CGTTACTCTGGACGTGACCAATGAGAGAAGCATCAATTCCGCGAAGAAAA
TAATCATGAAAGATCTGGCTTCCAAAGGAGACGTTGGAGGAAAGGAGGGA
GGAGGAGGAGCAGCAGCAGCAGGTCTGCCGCTTGTGGCCGTGGTGAACAA
TGCAGGCATTGCGGGGAGGTCTCCGTTGGAGTTTCATGCCATGGCTGCAG
TTGAAAAGATATTCCATGTGAATGTATTTGGGCTGCTGAGGGTGACGCAG
GTTTTCCTGCCCGAAATCAGGAAAAACAAGGGGCGTATAATCAACATCTC
CTCGGTCCTGGGTGCACTGACCATCGCCGACATGGGCGCCTACAGCGCAA
GCAAGCACGCGATGGAATCTTTGTCTGATGGCCTCCGACGGGAGCTCAGG
CCATTGGGTGTTAGCGTCAGCATCGTCCAACCCGGCATTGTCGTCTCGGC
CATCCACGACAAAGTCGCCTCCAGCTCCCCCGCCACCTCCTCCTCCGATT
CCTCCCCCTCCGCCACGACCTACCCCCACATGTACACTCCCGAGAAACAG
GCCGAGGGCAAGGCCTTCCTTCAGCAGGCGGCGTCCACGCGGGTGACTAC
TGCGGCGATTCTTGATTCTCTCTTTAATCCCCGCCCGCGCACTCGATACC
CTGTTGCGGCCGTGGGGCCCGTGCCCGCAGGCCTGCTGACATTCAACGCA
TATTTCTTGCCTGATCGCATCACTGACTGGATGATGCAGTAGAACGAGGG
GGGGGGGGGGGGTCGGAGGGGAAGAGGGGGGAAGGATGAAAAGGAGGGAG
GAAGGGAGAAAGAAATGAAGTGGTTGGGCTGGACCAGGCTATTCTCTGTC
GTTAAAATGGATAGTTTGATTCGTTTGCTCGTTCATTAATGTTTGTATAT
ATATGCATTAGTGAAGTACACCATTATCTGAAGGGCACTTGTTTCGGGTG
TCATGGCTGCACGCGTCAAGATGGCCCAAAAACGACATCGTGGGAGATAG
GTGCGAGAACTAAAGACGGGGGAGAGGCAGGAAGGACGCAGAAGAAAGTT
GAAGGAGTCAAACAATTTATCGATTCTATTGAAATGAATACTTCCCACTA
TCCGATGACTTGAACTCTGCACGCACCCTCCCTCCTCCCCTCTGCTCGTC
TACCCTGAAGCATGA

protein sequence of NO10G00620.1

>NO10G00620.1-protein ID=NO10G00620.1-protein|Name=NO10G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MANATPSKSAPQAYVTPSPPAARSSALFASSSSTKTTKPEAVGELYRFRV
WHTALLLTLAFLLDIPFLIDRLTTKQYTVHTKGGVLITGASTGIGRDAAV
ALAIKHKGFVVYAGVRNGKDAKAISGLNIPNLLPVTLDVTNERSINSAKK
IIMKDLASKGDVGGKEGGGGAAAAGLPLVAVVNNAGIAGRSPLEFHAMAA
VEKIFHVNVFGLLRVTQVFLPEIRKNKGRIINISSVLGALTIADMGAYSA
SKHAMESLSDGLRRELRPLGVSVSIVQPGIVVSAIHDKVASSSPATSSSD
SSPSATTYPHMYTPEKQAEGKAFLQQAASTRVTTAAILDSLFNPRPRTRY
PVAAVGPVPAGLLTFNAYFLPDRITDWMMQ*

mRNA from alignment at chr10:208010..210594-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00620.1 ID=NO10G00620.1|Name=NO10G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=2585bp|location=Sequence derived from alignment at chr10:208010..210594- (Nannochloropsis oceanica)
CACGATTTGGTCGTTGAGAAGGATTATGCGGGTGTTTTGAAGAAATCTCG
GCCTCTAATGCACGTGCATCCCGCATGCCCCACAGGCACATCAACAGCCA
AAAAATGTCGATGTAAGGTACGATGTCCTGCAGTGTTTTGAGGACATGAG
GATGCGACTTTTTGGTCAAGAAGAGGGCAACTGTGGTGACGGGAGCATGA
CCTCGCGCAAATCCCTCCAGCAACCCTCGAGGAACTTCTGACCACTGGCA
GGAAACAAACGCACGCTTGTCCACACTCGCACAAACACGGCCACGCGTGC
ATGCAGTGGTGCATTGTAGTGGACTGCCGGTGGGCCCTGGTATAAAGGGA
AGTGATTGCGCCAGTAGAATCTGCTCGGCCCTGCGGCACGACACGACATC
GCTCGCCGTCTCGCACGAACAGCACCGGCTCATGTCCTTCTTCGACCGCT
ATTCCAAGCACTGCTGCCCTGTGCCCGAGGCCCGTTTTGCACCTGCAATC
CAAATGATCTCTCTGACAAGGGTCTCACGAAGCTGTGCCCCTGCTGGGAA
GACTGGATGCCTTCCAACAAGCCCTACCATGCCTGACTCTAGCCTCCTCC
CTCCTCCCTCCCTCCTTTTCAATAGCCACAAGCAGGCAGTTGTATCAACA
TGGCTAATGCTACACCCAGCAAATCCGCGCCCCAAGCCTATGTCACTCCT
TCTCCTCCTGCTGCTCGTTCGTCCGCCCTCTTCGCTTCCTCTTCCTCTAC
CAAAACTACCAAGCCTGAGGCCGTCGGGGAGCTCTACCGGTTTCGCGTCT
GGCACACTGCCCTCCTCCTCACCCTGGCCTTCCTCCTTGACATTCCCTTT
CTTATTGATCGGCTCACAACAAAACAGTACACTGTGCATACGAAAGGGGG
GGTGTTAATCACTGGAGCAAGCACTGGAATCGGGAGAGATGCGGCCGTGG
CGTTGGCGATCAAGCACAAGGGCTTTGTGGTCTATGCAGGCGTGCGCAAT
GGTATGAAAAGCAAGGGGAGATAAAGGACAATGGCAATGAAATGTGGAGG
AATGCTTTGTTTGATTCATTCAATAGAGTCGTCTATTTAAAGAGATTCAA
CCCACCCTTCCTTCCCTCCCTCCCTCCCTCCCACGCACTTTCTTGCCAGG
CAAAGACGCCAAGGCTATCTCAGGCCTGAACATCCCGAATCTCCTGCCCG
TTACTCTGGACGTGACCAATGAGAGAAGCATCAATTCCGCGAAGAAAATA
ATCATGAAAGATCTGGCTTCCAAAGGAGACGTTGGAGGAAAGGAGGGAGG
AGGAGGAGCAGCAGCAGCAGGTCTGCCGCTTGTGGCCGTGGTGAACAATG
CAGGCATTGCGGGGAGGTCTCCGTTGGAGTTTCATGCCATGGCTGCAGTT
GAAAAGATATTCCATGTGAATGTATTTGGGCTGCTGAGGGTGACGCAGGT
TTTCCTGCCCGAAATCAGGTAACGGAGGGAGGGAGGGAGGGAGGGAAGGA
GGGCAGAGTGTGTTTGTGAAGCTTCGCCTCGGTTTACTCACGCTCCACTC
TCCCGTCCCGTACCTTTCCTTCCTTTCCTTTCTCGAAGGAAAAACAAGGG
GCGTATAATCAACATCTCCTCGGTCCTGGGTGCACTGACCATCGCCGACA
TGGGCGCCTACAGCGCAAGCAAGCACGCGATGGAATCTTTGTCTGATGGC
CTCCGACGGGAGCTCAGGCCATTGGGTGTTAGCGTCAGGTATGTCAGTCC
TCCCTACTCCTTTCTTCCGTCCCTCCCTCTCTCCTCCTATCCTTTTCCCG
TCCCATCCACATTCCTTCCTCCCTCTCTCCCTCTCCCAAGCATCGTCCAA
CCCGGCATTGTCGTCTCGGCCATCCACGACAAAGTCGCCTCCAGCTCCCC
CGCCACCTCCTCCTCCGATTCCTCCCCCTCCGCCACGACCTACCCCCACA
TGTACACTCCCGAGAAACAGGCCGAGGGCAAGGCCTTCCTTCAGCAGGCG
GCGTCCACGCGGGTGACTACTGCGGCGATTCTTGATTCTCTCTTTAATCC
CCGCCCGCGCACTCGATACCCTGTTGCGGCCGTGGGGCCCGTGCCCGCAG
GCCTGCTGACATTCAACGCATATTTCTTGCCTGATCGCATCACTGACTGG
ATGATGCAGTAGAACGAGGGGGGGGGGGGGGGTCGGAGGGGAAGAGGGGG
GAAGGATGAAAAGGAGGGAGGAAGGGAGAAAGAAATGAAGTGGTTGGGCT
GGACCAGGCTATTCTCTGTCGTTAAAATGGATAGTTTGATTCGTTTGCTC
GTTCATTAATGTTTGTATATATATGCATTAGTGAAGTACACCATTATCTG
AAGGGCACTTGTTTCGGGTGTCATGGCTGCACGCGTCAAGATGGCCCAAA
AACGACATCGTGGGAGATAGGTGCGAGAACTAAAGACGGGGGAGAGGCAG
GAAGGACGCAGAAGAAAGTTGAAGGAGTCAAACAATTTATCGATTCTATT
GAAATGAATACTTCCCACTATCCGATGACTTGAACTCTGCACGCACCCTC
CCTCCTCCCCTCTGCTCGTCTACCCTGAAGCATGA

Coding sequence (CDS) from alignment at chr10:208010..210594-

>NO10G00620.1 ID=NO10G00620.1|Name=NO10G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr10:208010..210594- (Nannochloropsis oceanica)
ATGGCTAATGCTACACCCAGCAAATCCGCGCCCCAAGCCTATGTCACTCC
TTCTCCTCCTGCTGCTCGTTCGTCCGCCCTCTTCGCTTCCTCTTCCTCTA
CCAAAACTACCAAGCCTGAGGCCGTCGGGGAGCTCTACCGGTTTCGCGTC
TGGCACACTGCCCTCCTCCTCACCCTGGCCTTCCTCCTTGACATTCCCTT
TCTTATTGATCGGCTCACAACAAAACAGTACACTGTGCATACGAAAGGGG
GGGTGTTAATCACTGGAGCAAGCACTGGAATCGGGAGAGATGCGGCCGTG
GCGTTGGCGATCAAGCACAAGGGCTTTGTGGTCTATGCAGGCGTGCGCAA
TGGCAAAGACGCCAAGGCTATCTCAGGCCTGAACATCCCGAATCTCCTGC
CCGTTACTCTGGACGTGACCAATGAGAGAAGCATCAATTCCGCGAAGAAA
ATAATCATGAAAGATCTGGCTTCCAAAGGAGACGTTGGAGGAAAGGAGGG
AGGAGGAGGAGCAGCAGCAGCAGGTCTGCCGCTTGTGGCCGTGGTGAACA
ATGCAGGCATTGCGGGGAGGTCTCCGTTGGAGTTTCATGCCATGGCTGCA
GTTGAAAAGATATTCCATGTGAATGTATTTGGGCTGCTGAGGGTGACGCA
GGTTTTCCTGCCCGAAATCAGGAAAAACAAGGGGCGTATAATCAACATCT
CCTCGGTCCTGGGTGCACTGACCATCGCCGACATGGGCGCCTACAGCGCA
AGCAAGCACGCGATGGAATCTTTGTCTGATGGCCTCCGACGGGAGCTCAG
GCCATTGGGTGTTAGCGTCAGCATCGTCCAACCCGGCATTGTCGTCTCGG
CCATCCACGACAAAGTCGCCTCCAGCTCCCCCGCCACCTCCTCCTCCGAT
TCCTCCCCCTCCGCCACGACCTACCCCCACATGTACACTCCCGAGAAACA
GGCCGAGGGCAAGGCCTTCCTTCAGCAGGCGGCGTCCACGCGGGTGACTA
CTGCGGCGATTCTTGATTCTCTCTTTAATCCCCGCCCGCGCACTCGATAC
CCTGTTGCGGCCGTGGGGCCCGTGCCCGCAGGCCTGCTGACATTCAACGC
ATATTTCTTGCCTGATCGCATCACTGACTGGATGATGCAGTAG

Synonyms

Publications