NO10G00600.1, NO10G00600.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00600.1
Unique Name	NO10G00600.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1734
Alignment location	chr10:202302..204035 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:202302..204035 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G00600.1 vs.

BLAST of NO10G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00600	NO10G00600	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00600.1	NO10G00600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00600.1.cds1	NO10G00600.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:202302..204035+
coding sequence from alignment at chr10:202302..204035+

mRNA sequence

>NO10G00600.1 ID=NO10G00600.1|Name=NO10G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp
ATGGGGCCGACGTCGTCACCTCCGCAACAAGCAGACCTCGAGAAGCAAGC
TTACTTCGCCCGGCACTCAGCCCTCACCCAACACCTTGCGCGCCTCGAGC
ACGACCTCCAGCGGCTCGTGCCGCCCAGCCTTACAACCACACTTGCAACC
GAATCGTCTTACGAACATGTGCAAGCCCAAGTAGCATTTCGACGGAAGTT
GGGCGGGCTGCAGAGTGCGCTGGCCAAGGCCCGCGCACGCATACGGTGCA
TAAGTGGCGACAAGAAGGAGCAGCACCACCACCATCTTAACTTCGAAAAA
GGAGGACGAAGAGTAGAAGAAGAAAGAGGAGAAGCAGCAGCAACAGTTCC
CGTGGCCAGTGACAAAATTGAGGTGTACCTAGCATCTGTGCAAGATGGGC
TGCATGCTTTGGCCTTGGCCCATCGCCGGGAATTTGAGGCATTGCGCTGG
CAAGAGAGGGTGCTGACCAAGGATATGGAGAAGGCAATGACCACAGCTGC
TGCTGCTCCTGGAGAAAAGGATAATCGTGAAAAGAATTATAAAAAAAAGA
CTCTCAGCACTACCGGTAAGAGCAAGAGTGCCATAAGCACGAGCAGTGAG
ATGAAAGCACAACAATCACAGGCTAGAGTGCGCGTGATGGAAATTCAATC
AGCCATCGCGGCATTGGATGAAGAGATTCTTGCACATGGTGGTTTGACGG
GTGGGTGGCAGGCGGAGGAACATGAAAAATTTCTGGCTTTGTGGCAGGAT
TTTCGAGGACATGCCCGACCGAGGGAGGAAGAGGAGGAAGAGGATGAGGA
GGAGGAAGAGGAAGAGGATGAAGACCCGGTGGCAGAAGTCAAGGGCAATT
TGTTATTCTTGGATCGGGCGGTACGTGTTCTGTGGTCACGAAGTGAGGGG
GAGGTGATGCGGCATGTAGAATGGTACGTCAAACATCGCCATCGCATCCG
CGCTCGAGCACTGCGTGTCAGGCAGAGGAAGGAGGCCGAGGAGGAGGCAA
GGAGGGAAGAAGAGGAGAAGGGGTGGAATTTGGACGAAGTGACGCGCAAA
CGTCGCCTCGTAGCGGAATGGCGAAGACGACGGCAGCTACAGGAGGAGGA
AGAGGAGGAGGCACAAAAACTTCAGATGTGGGAAGCGCAGCAACGCAAGG
CTGCACAGGAAAAACGAAGAGCAGCCTTGACGAGGAAGCAATTGGCAAGG
CACCGGGAAGAGAAAGAGGAGAGAGAGCGACAGCAAACAGAAGAACAGAC
TCGGCTGGAGGAGGAAATGGAAGAGGAGGCGGAATACAGGCGGCTAGTCC
ACGAAGGGAAGGGAGGGAGGGAGGACGAGAAAGAGAGTCCGAACGTCTTA
AAATTAGTGTTGGAGCGAAGGGCGCGCTTGAGTCTAAGACATGCAAAGGA
GAGAAGAGAACGAGCATGGGCCATGCGACCTATGAGGCAGGCTGAAGAGA
GGTCGAGGCGACAACAGGCGGTCTTGCAGGAGGTGGCTTGGGAGGAGGCC
ATGAAGGGGAATGGGGATGATGTGATGAGCCAAGGAGGAGCAGGAGGAGA
ACGAATGGAGGAAGGAAAGACACGGCGATCATTGCCGCGTTTTGTATATC
GGGATGTGGGGAGGCTGAATCAATCGACGGAGGCCTCGAGCAGGCGGGCG
TATGACGGCGAGGAGTTGGATGCCAAGGACACAGCGCGCTTGTTTTGCTT
GGCTCACGAACGGCCCTTACCACCTGGGTTTTAA

protein sequence of NO10G00600.1

>NO10G00600.1-protein ID=NO10G00600.1-protein|Name=NO10G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MGPTSSPPQQADLEKQAYFARHSALTQHLARLEHDLQRLVPPSLTTTLAT
ESSYEHVQAQVAFRRKLGGLQSALAKARARIRCISGDKKEQHHHHLNFEK
GGRRVEEERGEAAATVPVASDKIEVYLASVQDGLHALALAHRREFEALRW
QERVLTKDMEKAMTTAAAAPGEKDNREKNYKKKTLSTTGKSKSAISTSSE
MKAQQSQARVRVMEIQSAIAALDEEILAHGGLTGGWQAEEHEKFLALWQD
FRGHARPREEEEEEDEEEEEEEDEDPVAEVKGNLLFLDRAVRVLWSRSEG
EVMRHVEWYVKHRHRIRARALRVRQRKEAEEEARREEEEKGWNLDEVTRK
RRLVAEWRRRRQLQEEEEEEAQKLQMWEAQQRKAAQEKRRAALTRKQLAR
HREEKEERERQQTEEQTRLEEEMEEEAEYRRLVHEGKGGREDEKESPNVL
KLVLERRARLSLRHAKERRERAWAMRPMRQAEERSRRQQAVLQEVAWEEA
MKGNGDDVMSQGGAGGERMEEGKTRRSLPRFVYRDVGRLNQSTEASSRRA
YDGEELDAKDTARLFCLAHERPLPPGF*

mRNA from alignment at chr10:202302..204035+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00600.1 ID=NO10G00600.1|Name=NO10G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp|location=Sequence derived from alignment at chr10:202302..204035+ (Nannochloropsis oceanica)
ATGGGGCCGACGTCGTCACCTCCGCAACAAGCAGACCTCGAGAAGCAAGC
TTACTTCGCCCGGCACTCAGCCCTCACCCAACACCTTGCGCGCCTCGAGC
ACGACCTCCAGCGGCTCGTGCCGCCCAGCCTTACAACCACACTTGCAACC
GAATCGTCTTACGAACATGTGCAAGCCCAAGTAGCATTTCGACGGAAGTT
GGGCGGGCTGCAGAGTGCGCTGGCCAAGGCCCGCGCACGCATACGGTGCA
TAAGTGGCGACAAGAAGGAGCAGCACCACCACCATCTTAACTTCGAAAAA
GGAGGACGAAGAGTAGAAGAAGAAAGAGGAGAAGCAGCAGCAACAGTTCC
CGTGGCCAGTGACAAAATTGAGGTGTACCTAGCATCTGTGCAAGATGGGC
TGCATGCTTTGGCCTTGGCCCATCGCCGGGAATTTGAGGCATTGCGCTGG
CAAGAGAGGGTGCTGACCAAGGATATGGAGAAGGCAATGACCACAGCTGC
TGCTGCTCCTGGAGAAAAGGATAATCGTGAAAAGAATTATAAAAAAAAGA
CTCTCAGCACTACCGGTAAGAGCAAGAGTGCCATAAGCACGAGCAGTGAG
ATGAAAGCACAACAATCACAGGCTAGAGTGCGCGTGATGGAAATTCAATC
AGCCATCGCGGCATTGGATGAAGAGATTCTTGCACATGGTGGTTTGACGG
GTGGGTGGCAGGCGGAGGAACATGAAAAATTTCTGGCTTTGTGGCAGGAT
TTTCGAGGACATGCCCGACCGAGGGAGGAAGAGGAGGAAGAGGATGAGGA
GGAGGAAGAGGAAGAGGATGAAGACCCGGTGGCAGAAGTCAAGGGCAATT
TGTTATTCTTGGATCGGGCGGTACGTGTTCTGTGGTCACGAAGTGAGGGG
GAGGTGATGCGGCATGTAGAATGGTACGTCAAACATCGCCATCGCATCCG
CGCTCGAGCACTGCGTGTCAGGCAGAGGAAGGAGGCCGAGGAGGAGGCAA
GGAGGGAAGAAGAGGAGAAGGGGTGGAATTTGGACGAAGTGACGCGCAAA
CGTCGCCTCGTAGCGGAATGGCGAAGACGACGGCAGCTACAGGAGGAGGA
AGAGGAGGAGGCACAAAAACTTCAGATGTGGGAAGCGCAGCAACGCAAGG
CTGCACAGGAAAAACGAAGAGCAGCCTTGACGAGGAAGCAATTGGCAAGG
CACCGGGAAGAGAAAGAGGAGAGAGAGCGACAGCAAACAGAAGAACAGAC
TCGGCTGGAGGAGGAAATGGAAGAGGAGGCGGAATACAGGCGGCTAGTCC
ACGAAGGGAAGGGAGGGAGGGAGGACGAGAAAGAGAGTCCGAACGTCTTA
AAATTAGTGTTGGAGCGAAGGGCGCGCTTGAGTCTAAGACATGCAAAGGA
GAGAAGAGAACGAGCATGGGCCATGCGACCTATGAGGCAGGCTGAAGAGA
GGTCGAGGCGACAACAGGCGGTCTTGCAGGAGGTGGCTTGGGAGGAGGCC
ATGAAGGGGAATGGGGATGATGTGATGAGCCAAGGAGGAGCAGGAGGAGA
ACGAATGGAGGAAGGAAAGACACGGCGATCATTGCCGCGTTTTGTATATC
GGGATGTGGGGAGGCTGAATCAATCGACGGAGGCCTCGAGCAGGCGGGCG
TATGACGGCGAGGAGTTGGATGCCAAGGACACAGCGCGCTTGTTTTGCTT
GGCTCACGAACGGCCCTTACCACCTGGGTTTTAA

Coding sequence (CDS) from alignment at chr10:202302..204035+

>NO10G00600.1 ID=NO10G00600.1|Name=NO10G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at chr10:202302..204035+ (Nannochloropsis oceanica)
ATGGGGCCGACGTCGTCACCTCCGCAACAAGCAGACCTCGAGAAGCAAGC
TTACTTCGCCCGGCACTCAGCCCTCACCCAACACCTTGCGCGCCTCGAGC
ACGACCTCCAGCGGCTCGTGCCGCCCAGCCTTACAACCACACTTGCAACC
GAATCGTCTTACGAACATGTGCAAGCCCAAGTAGCATTTCGACGGAAGTT
GGGCGGGCTGCAGAGTGCGCTGGCCAAGGCCCGCGCACGCATACGGTGCA
TAAGTGGCGACAAGAAGGAGCAGCACCACCACCATCTTAACTTCGAAAAA
GGAGGACGAAGAGTAGAAGAAGAAAGAGGAGAAGCAGCAGCAACAGTTCC
CGTGGCCAGTGACAAAATTGAGGTGTACCTAGCATCTGTGCAAGATGGGC
TGCATGCTTTGGCCTTGGCCCATCGCCGGGAATTTGAGGCATTGCGCTGG
CAAGAGAGGGTGCTGACCAAGGATATGGAGAAGGCAATGACCACAGCTGC
TGCTGCTCCTGGAGAAAAGGATAATCGTGAAAAGAATTATAAAAAAAAGA
CTCTCAGCACTACCGGTAAGAGCAAGAGTGCCATAAGCACGAGCAGTGAG
ATGAAAGCACAACAATCACAGGCTAGAGTGCGCGTGATGGAAATTCAATC
AGCCATCGCGGCATTGGATGAAGAGATTCTTGCACATGGTGGTTTGACGG
GTGGGTGGCAGGCGGAGGAACATGAAAAATTTCTGGCTTTGTGGCAGGAT
TTTCGAGGACATGCCCGACCGAGGGAGGAAGAGGAGGAAGAGGATGAGGA
GGAGGAAGAGGAAGAGGATGAAGACCCGGTGGCAGAAGTCAAGGGCAATT
TGTTATTCTTGGATCGGGCGGTACGTGTTCTGTGGTCACGAAGTGAGGGG
GAGGTGATGCGGCATGTAGAATGGTACGTCAAACATCGCCATCGCATCCG
CGCTCGAGCACTGCGTGTCAGGCAGAGGAAGGAGGCCGAGGAGGAGGCAA
GGAGGGAAGAAGAGGAGAAGGGGTGGAATTTGGACGAAGTGACGCGCAAA
CGTCGCCTCGTAGCGGAATGGCGAAGACGACGGCAGCTACAGGAGGAGGA
AGAGGAGGAGGCACAAAAACTTCAGATGTGGGAAGCGCAGCAACGCAAGG
CTGCACAGGAAAAACGAAGAGCAGCCTTGACGAGGAAGCAATTGGCAAGG
CACCGGGAAGAGAAAGAGGAGAGAGAGCGACAGCAAACAGAAGAACAGAC
TCGGCTGGAGGAGGAAATGGAAGAGGAGGCGGAATACAGGCGGCTAGTCC
ACGAAGGGAAGGGAGGGAGGGAGGACGAGAAAGAGAGTCCGAACGTCTTA
AAATTAGTGTTGGAGCGAAGGGCGCGCTTGAGTCTAAGACATGCAAAGGA
GAGAAGAGAACGAGCATGGGCCATGCGACCTATGAGGCAGGCTGAAGAGA
GGTCGAGGCGACAACAGGCGGTCTTGCAGGAGGTGGCTTGGGAGGAGGCC
ATGAAGGGGAATGGGGATGATGTGATGAGCCAAGGAGGAGCAGGAGGAGA
ACGAATGGAGGAAGGAAAGACACGGCGATCATTGCCGCGTTTTGTATATC
GGGATGTGGGGAGGCTGAATCAATCGACGGAGGCCTCGAGCAGGCGGGCG
TATGACGGCGAGGAGTTGGATGCCAAGGACACAGCGCGCTTGTTTTGCTT
GGCTCACGAACGGCCCTTACCACCTGGGTTTTAA

Synonyms

Publications